View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2984_low_6 (Length: 451)

Name: NF2984_low_6
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2984_low_6
NF2984_low_6
[»] scaffold0026 (2 HSPs)
scaffold0026 (1-331)||(12534-12863)
scaffold0026 (342-437)||(12437-12543)
[»] scaffold0634 (1 HSPs)
scaffold0634 (1-402)||(2756-3156)
[»] chr2 (18 HSPs)
chr2 (1-434)||(26582865-26583313)
chr2 (24-330)||(23168954-23169261)
chr2 (24-330)||(23580211-23580518)
chr2 (218-403)||(23089594-23089779)
chr2 (103-362)||(23062869-23063127)
chr2 (218-431)||(23101994-23102207)
chr2 (295-395)||(23878325-23878425)
chr2 (291-406)||(21907750-21907865)
chr2 (201-352)||(26884489-26884639)
chr2 (218-363)||(24660876-24661021)
chr2 (300-437)||(5706610-5706759)
chr2 (291-393)||(29281368-29281470)
chr2 (267-374)||(25181501-25181606)
chr2 (342-440)||(23264515-23264613)
chr2 (300-393)||(9957-10050)
chr2 (103-331)||(23264301-23264524)
chr2 (291-363)||(27208322-27208394)
chr2 (291-363)||(27210657-27210729)
[»] chr6 (26 HSPs)
chr6 (1-434)||(29614738-29615186)
chr6 (77-406)||(25396343-25396671)
chr6 (223-401)||(18799754-18799932)
chr6 (218-403)||(21565751-21565936)
chr6 (253-437)||(12167637-12167832)
chr6 (253-437)||(19286546-19286741)
chr6 (253-393)||(19877730-19877870)
chr6 (253-437)||(19883506-19883701)
chr6 (201-403)||(19300308-19300509)
chr6 (253-374)||(19786529-19786650)
chr6 (1-109)||(19786751-19786858)
chr6 (300-437)||(34640575-34640724)
chr6 (300-437)||(34647249-34647398)
chr6 (226-395)||(19471914-19472082)
chr6 (1-109)||(12167428-12167535)
chr6 (1-109)||(19877521-19877628)
chr6 (1-109)||(19883297-19883404)
chr6 (342-437)||(24513370-24513465)
chr6 (1-109)||(19286337-19286444)
chr6 (300-393)||(20008529-20008622)
chr6 (291-437)||(25470290-25470448)
chr6 (313-435)||(21365067-21365200)
chr6 (313-435)||(23969049-23969182)
chr6 (386-437)||(19786455-19786506)
chr6 (386-435)||(19877874-19877923)
chr6 (268-331)||(9186841-9186903)
[»] chr3 (16 HSPs)
chr3 (1-393)||(41455741-41456134)
chr3 (1-395)||(18914198-18914590)
chr3 (291-431)||(55499658-55499798)
chr3 (291-401)||(16802029-16802139)
chr3 (200-382)||(13324381-13324562)
chr3 (301-434)||(24192274-24192418)
chr3 (61-118)||(18136117-18136174)
chr3 (200-331)||(13302844-13302974)
chr3 (200-331)||(13313520-13313650)
chr3 (61-114)||(18129607-18129660)
chr3 (291-393)||(14865216-14865319)
chr3 (387-436)||(10390034-10390083)
chr3 (387-436)||(10415123-10415172)
chr3 (387-436)||(10421793-10421842)
chr3 (336-401)||(12034007-12034072)
chr3 (66-170)||(9533232-9533335)
[»] scaffold0456 (4 HSPs)
scaffold0456 (164-331)||(241-407)
scaffold0456 (164-331)||(7386-7552)
scaffold0456 (353-437)||(409-504)
scaffold0456 (353-437)||(7554-7649)
[»] scaffold0029 (4 HSPs)
scaffold0029 (1-331)||(110948-111284)
scaffold0029 (295-393)||(91783-91881)
scaffold0029 (295-393)||(97509-97607)
scaffold0029 (386-434)||(111330-111378)
[»] chr7 (28 HSPs)
chr7 (128-393)||(13742860-13743121)
chr7 (1-434)||(13123506-13123958)
chr7 (1-384)||(12710496-12710887)
chr7 (218-440)||(16676623-16676845)
chr7 (218-440)||(17650859-17651081)
chr7 (253-437)||(13006706-13006901)
chr7 (124-362)||(46625166-46625403)
chr7 (103-362)||(13678649-13678906)
chr7 (24-109)||(13742719-13742803)
chr7 (291-401)||(11389910-11390020)
chr7 (317-395)||(20311631-20311709)
chr7 (302-437)||(12591230-12591377)
chr7 (1-109)||(13006497-13006604)
chr7 (268-383)||(11383440-11383554)
chr7 (291-393)||(16090457-16090559)
chr7 (291-363)||(14320243-14320315)
chr7 (66-157)||(18607248-18607339)
chr7 (317-406)||(21231554-21231643)
chr7 (66-170)||(147453-147556)
chr7 (313-393)||(2464758-2464838)
chr7 (313-393)||(3858007-3858087)
chr7 (386-435)||(3857953-3858003)
chr7 (66-120)||(16475929-16475983)
chr7 (303-393)||(29181690-29181780)
chr7 (336-384)||(2966383-2966431)
chr7 (386-434)||(12710435-12710483)
chr7 (61-105)||(13318007-13318051)
chr7 (336-384)||(20907038-20907086)
[»] chr4 (16 HSPs)
chr4 (124-437)||(8046420-8046744)
chr4 (317-440)||(15407485-15407608)
chr4 (301-403)||(14486052-14486154)
chr4 (61-118)||(14555881-14555938)
chr4 (212-352)||(11847397-11847537)
chr4 (200-263)||(14485975-14486037)
chr4 (300-437)||(53483022-53483171)
chr4 (1-109)||(8046777-8046884)
chr4 (291-393)||(16147412-16147514)
chr4 (218-330)||(8834185-8834297)
chr4 (267-384)||(27905613-27905729)
chr4 (270-362)||(15244566-15244658)
chr4 (69-170)||(18212523-18212623)
chr4 (220-392)||(13887086-13887258)
chr4 (220-392)||(13887943-13888115)
chr4 (218-362)||(15307415-15307563)
[»] scaffold1773 (2 HSPs)
scaffold1773 (124-393)||(324-592)
scaffold1773 (1-109)||(162-269)
[»] scaffold0247 (1 HSPs)
scaffold0247 (218-437)||(10610-10829)
[»] scaffold0117 (1 HSPs)
scaffold0117 (1-434)||(9167-9619)
[»] scaffold0249 (1 HSPs)
scaffold0249 (61-212)||(7517-7667)
[»] scaffold0154 (1 HSPs)
scaffold0154 (213-402)||(30194-30383)
[»] chr8 (11 HSPs)
chr8 (1-393)||(23865624-23866026)
chr8 (317-440)||(14057148-14057271)
chr8 (317-440)||(25111385-25111508)
chr8 (1-109)||(19902808-19902915)
chr8 (63-118)||(19987990-19988045)
chr8 (103-395)||(18613409-18613697)
chr8 (267-393)||(24321252-24321376)
chr8 (218-387)||(21931018-21931187)
chr8 (386-437)||(17054009-17054060)
chr8 (67-117)||(20005423-20005473)
chr8 (386-434)||(23866030-23866078)
[»] scaffold0053 (2 HSPs)
scaffold0053 (105-362)||(81826-82082)
scaffold0053 (291-393)||(80072-80174)
[»] scaffold0004 (2 HSPs)
scaffold0004 (103-419)||(116052-116366)
scaffold0004 (218-406)||(129204-129393)
[»] scaffold0028 (2 HSPs)
scaffold0028 (78-406)||(65265-65592)
scaffold0028 (124-186)||(1274-1336)
[»] chr5 (19 HSPs)
chr5 (1-437)||(23527640-23528099)
chr5 (61-118)||(22232436-22232493)
chr5 (231-395)||(18408521-18408685)
chr5 (313-393)||(19236294-19236374)
chr5 (342-401)||(22439310-22439369)
chr5 (267-374)||(22460506-22460611)
chr5 (267-375)||(34829432-34829539)
chr5 (267-393)||(22467130-22467254)
chr5 (275-366)||(20781102-20781192)
chr5 (103-170)||(23112480-23112546)
chr5 (387-437)||(20819639-20819689)
chr5 (387-437)||(20826739-20826789)
chr5 (216-248)||(20819456-20819488)
chr5 (216-248)||(20826556-20826588)
chr5 (313-393)||(28889978-28890058)
chr5 (313-393)||(28896682-28896762)
chr5 (313-393)||(28909930-28910010)
chr5 (313-393)||(28931622-28931702)
chr5 (313-393)||(28946325-28946405)
[»] scaffold0461 (2 HSPs)
scaffold0461 (268-440)||(581-752)
scaffold0461 (268-352)||(7605-7688)
[»] scaffold0139 (1 HSPs)
scaffold0139 (103-441)||(15521-15856)
[»] scaffold0025 (1 HSPs)
scaffold0025 (301-434)||(14977-15121)
[»] scaffold0138 (1 HSPs)
scaffold0138 (218-362)||(1117-1261)
[»] chr1 (13 HSPs)
chr1 (268-440)||(18712098-18712270)
chr1 (253-393)||(41111214-41111354)
chr1 (61-118)||(20941657-20941714)
chr1 (267-393)||(21710167-21710292)
chr1 (1-109)||(41111005-41111112)
chr1 (201-352)||(19961472-19961622)
chr1 (218-389)||(22030333-22030504)
chr1 (267-393)||(20851714-20851838)
chr1 (267-393)||(21705625-21705749)
chr1 (300-393)||(20858341-20858434)
chr1 (103-331)||(11157328-11157554)
chr1 (66-170)||(20438224-20438327)
chr1 (386-435)||(41111358-41111407)
[»] scaffold0124 (1 HSPs)
scaffold0124 (291-440)||(34861-35010)
[»] scaffold0235 (2 HSPs)
scaffold0235 (268-427)||(15475-15633)
scaffold0235 (291-427)||(23192-23328)
[»] scaffold1061 (1 HSPs)
scaffold1061 (124-331)||(1607-1813)
[»] scaffold0317 (1 HSPs)
scaffold0317 (103-362)||(542-799)
[»] scaffold0310 (1 HSPs)
scaffold0310 (317-434)||(6907-7024)
[»] scaffold0077 (3 HSPs)
scaffold0077 (303-431)||(4153-4281)
scaffold0077 (61-113)||(17972-18024)
scaffold0077 (61-113)||(23605-23657)
[»] scaffold0222 (1 HSPs)
scaffold0222 (231-395)||(16083-16247)
[»] scaffold0085 (1 HSPs)
scaffold0085 (267-393)||(4253-4377)
[»] scaffold0020 (1 HSPs)
scaffold0020 (103-403)||(102489-102787)
[»] scaffold0348 (1 HSPs)
scaffold0348 (61-118)||(1527-1584)
[»] scaffold0001 (3 HSPs)
scaffold0001 (24-109)||(174440-174524)
scaffold0001 (201-352)||(493650-493800)
scaffold0001 (218-362)||(525062-525205)
[»] scaffold0476 (1 HSPs)
scaffold0476 (291-395)||(3871-3975)
[»] scaffold0090 (1 HSPs)
scaffold0090 (244-395)||(17492-17643)
[»] scaffold0261 (1 HSPs)
scaffold0261 (201-366)||(24178-24342)
[»] scaffold0031 (2 HSPs)
scaffold0031 (218-387)||(121200-121369)
scaffold0031 (218-387)||(132077-132246)
[»] scaffold0232 (1 HSPs)
scaffold0232 (218-325)||(19059-19166)
[»] scaffold0034 (1 HSPs)
scaffold0034 (201-384)||(72565-72747)
[»] scaffold0107 (1 HSPs)
scaffold0107 (317-440)||(41113-41236)
[»] scaffold0094 (1 HSPs)
scaffold0094 (226-331)||(51552-51657)
[»] scaffold0483 (1 HSPs)
scaffold0483 (201-352)||(11631-11782)
[»] scaffold0720 (1 HSPs)
scaffold0720 (267-402)||(3831-3966)
[»] scaffold0337 (1 HSPs)
scaffold0337 (66-170)||(9950-10053)
[»] scaffold0453 (1 HSPs)
scaffold0453 (201-330)||(11196-11324)
[»] scaffold0206 (1 HSPs)
scaffold0206 (291-352)||(18060-18121)
[»] scaffold0169 (1 HSPs)
scaffold0169 (218-262)||(6299-6343)
[»] scaffold1427 (1 HSPs)
scaffold1427 (103-170)||(1207-1273)
[»] scaffold0023 (2 HSPs)
scaffold0023 (336-393)||(134867-134924)
scaffold0023 (267-331)||(134820-134882)
[»] scaffold0924 (1 HSPs)
scaffold0924 (386-434)||(1343-1391)
[»] scaffold0335 (1 HSPs)
scaffold0335 (218-262)||(3328-3372)
[»] scaffold0006 (1 HSPs)
scaffold0006 (386-434)||(49597-49645)


Alignment Details
Target: scaffold0026 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 12863 - 12534
Alignment:
Q  1 atatctacatacaacttaactacacatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcaca 100  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||    
T  12863 atatctacatacaactcaactacacatatatctcatatgacttactactccgagagttctaacaatccagaacatacacaattaattataattatgcgca 12764  T
Q  101 tacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttct 200  Q
    ||||||||||||||||||||  ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  12763 tacatcaatttcattcaatag-ttatacattcacttgatttcttactcaatcatctccaaaattcactaacatcaaccaattcgatcaccggcttgttct 12665  T
Q  201 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaaga 300  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  12664 agtaggattctgatacctatacaagggatatacaagttaaaggaaatattttagaatgctcaagaagtcccctcgtgcacgaagcaaaagttcagaaaga 12565  T
Q  301 ggctgactaaggctcacttcgcttaagcgac 331  Q
    |||||||||||||||||||||||||||||||    
T  12564 ggctgactaaggctcacttcgcttaagcgac 12534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 342 - 437
Target Start/End: Complemental strand, 12543 - 12437
Alignment:
Q  342 cttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct-----------tgagcgaacttctaacagaatcaaaacggtttttcgc 430  Q
    |||||||||||||||||||| |||||||||||| ||||||||| ||||||||           ||||||||||||| |||||||||||| ||||||||||    
T  12543 cttaagcgaccggcttacagtaggtctgggttcagctcgcttacggttcgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgc 12444  T
Q  431 tcacagg 437  Q
    |||||||    
T  12443 tcacagg 12437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 2756 - 3156
Alignment:
Q  1 atatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcac 99  Q
    |||||||||||||||| |||||  |||||| |||||||||||||||||||||| || | | |||||||||||||||| ||||||| |||||||||||| |    
T  2756 atatctacatacaactcaactaatacatatgtttcatatgacttactactccgcaact-caaacaatccagaacatagacaattatttataattatgcgc 2854  T
Q  100 atacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttc 199  Q
    ||||||||| |||||||||||| |||||||||||| |||||||| ||||||||||||| || ||||||||||||||||||||||||||||| ||||||||    
T  2855 atacatcaaattcattcaataa-ttatatattcacatgatttcaaactcaatcatctccaatattcactaacatcaaccaattcgatcaccggcttgttc 2953  T
Q  200 tagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaag 299  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  2954 tagtgggattctggtacctatacaagggttatacaagttaaaggaaatattttagaatgctcaagaagtcccctcgtgcacgaagcaaaagttcagaaag 3053  T
Q  300 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcg 399  Q
    |||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||  ||||||| |  |||||||||||||    
T  3054 aggctgactaaggctcacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaggtctgggtttcgctcgctcacagttcgcttgagcg 3153  T
Q  400 aac 402  Q
    |||    
T  3154 aac 3156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 26582865 - 26583313
Alignment:
Q  1 atatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcac 99  Q
    ||||||||||||||||||||||  |||||| ||| |||||||||||||||||| || | | |||||||||||||||||||||||| |||||||||||| |    
T  26582865 atatctacatacaacttaactattacatatgttttatatgacttactactccgcaact-caaacaatccagaacatacacaattatttataattatgcgc 26582963  T
Q  100 atacatcaatttcattcaataaattat----atattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagctt 195  Q
    ||||||||||  ||||| | |  ||||    ||||||||| ||||||||||||||||||||| || ||| ||||||| ||| ||||||||||||| |||     
T  26582964 atacatcaatcacattccacatgttatgtatatattcactcgatttcatactcaatcatctccaacatttactaacaccaatcaattcgatcaccggcta 26583063  T
Q  196 gttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaa 295  Q
    |||||| ||||| || | |||||| || |||||||||| ||||||| |||| ||| ||||||||||||||||||||||| |||||||| ||||| ||||     
T  26583064 gttctaataggagtcggttacctacaccagggttatactagttaaaagaaatattatagaatgctcaagaagtcccctcctgcacgaaacaaaagttcag 26583163  T
Q  296 aaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt-----------a 384  Q
    ||  |||||||||||| || |||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||| ||||||||           |    
T  26583164 aagaaggctgactaagacttacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaggtctgggttcagctcgcttacgggtcgctca 26583263  T
Q  385 gggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 434  Q
     ||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  26583264 cggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 26583313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 24 - 330
Target Start/End: Complemental strand, 23169261 - 23168954
Alignment:
Q  24 acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaat 123  Q
    ||||||||||||||| ||||||||||||| || | | |||||||||| ||||||||||| | |||||||||||| ||||||||| |  ||||| | |  |    
T  23169261 acatatatttcatataacttactactccgcaact-caaacaatccagcacatacacaatcatttataattatgcgcatacatcattcacattccacatgt 23169163  T
Q  124 tatat--attcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctata 221  Q
    |||||  |||||| ||||||||||||||| |||||| |||||||| |||||||||||||| ||||||||||  |||||||||||||| || |||||||||    
T  23169162 tatatacattcacatgatttcatactcaaacatctccaaaattcattaacatcaaccaatgcgatcaccagagtgttctagtaggatcctaatacctata 23169063  T
Q  222 caagggttatacaagttaaaggaaacattttagaatgctcaaga-agtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttc 320  Q
    ||||||||||||||||| || ||||||||||||||| | ||| |  ||||||| || |||||| | ||  |||| |||||||||||||||| ||||  ||    
T  23169062 caagggttatacaagttgaaagaaacattttagaatacccaaaagggtcccctagtacacgaaac-aattttcagaaagaggctgactaagcctcagctc 23168964  T
Q  321 gcttaagcga 330  Q
    ||||||||||    
T  23168963 gcttaagcga 23168954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 24 - 330
Target Start/End: Complemental strand, 23580518 - 23580211
Alignment:
Q  24 acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaat 123  Q
    ||||||||||||||| ||||||||||||| || | | |||||||||| ||||||||||| | |||||||||||| ||||||||| |  ||||| | |  |    
T  23580518 acatatatttcatataacttactactccgcaact-caaacaatccagcacatacacaatcatttataattatgcgcatacatcattcacattccacatgt 23580420  T
Q  124 tatat--attcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctata 221  Q
    |||||  |||||| ||||||||||||||| |||||| |||||||| |||||||||||||| ||||||||||  |||||||||||||| || |||||||||    
T  23580419 tatatacattcacatgatttcatactcaaacatctccaaaattcattaacatcaaccaatgcgatcaccagagtgttctagtaggatcctaatacctata 23580320  T
Q  222 caagggttatacaagttaaaggaaacattttagaatgctcaaga-agtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttc 320  Q
    ||||||||||||||||| || ||||||||||||||| | ||| |  ||||||| || |||||| | ||  |||| |||||||||||||||| ||||  ||    
T  23580319 caagggttatacaagttgaaagaaacattttagaatacccaaaagggtcccctagtacacgaaac-aattttcagaaagaggctgactaagcctcagctc 23580221  T
Q  321 gcttaagcga 330  Q
    ||||||||||    
T  23580220 gcttaagcga 23580211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 218 - 403
Target Start/End: Complemental strand, 23089779 - 23089594
Alignment:
Q  218 tatacaagggttatacaagttaaaggaaacattttagaatgctcaa-gaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 316  Q
    |||| |||||||||||||||| |||||| ||| ||  ||||||||| |  ||| |||  ||||||| ||||   ||||||||| ||||||||||||   |    
T  23089779 tatataagggttatacaagttgaaggaaccatgtttcaatgctcaaaggggtctcctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaa 23089681  T
Q  317 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaact 403  Q
    |||||||||||||||    ||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||    
T  23089680 cttcgcttaagcgacgtccagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgagcgaact 23089594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 103 - 362
Target Start/End: Original strand, 23062869 - 23063127
Alignment:
Q  103 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttct-a 201  Q
    |||||| ||||||||| | | ||||| |||||| | ||||||||||||||||||| ||| ||||||||  ||||| |||||||| ||||   |||| | |    
T  23062869 catcaagttcattcaacatagtatatgttcactaggtttcatactcaatcatctccaaa-ttcactaaactcaactaattcgattaccaaagtgttttca 23062967  T
Q  202 gtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaaga 300  Q
    ||||||||| | |   |||| |||||||||||||||| || ||||||||||  ||||||||| | | ||||||  ||||||| |||||  |||||||||     
T  23062968 gtaggattcag-tgtatatataagggttatacaagttgaaagaaacatttttaaatgctcaaaaggatcccctaatgcacgaggcaaag-ttcaaaaagt 23063065  T
Q  301 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 362  Q
    ||||||||||||   |||||||||||||||| | | |||| |||||||||||||||||||||    
T  23063066 ggctgactaaggtcaacttcgcttaagcgacggctggttcgcttaagcgaccggcttacaga 23063127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 218 - 431
Target Start/End: Complemental strand, 23102207 - 23101994
Alignment:
Q  218 tatacaagggttatacaagttaaaggaaacattttagaatgctcaa-gaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 316  Q
    |||| |||||||||||||||| |||||| ||| ||  ||||||||| |  ||| |||  ||||||| ||||   ||||||||| ||||||||||||   |    
T  23102207 tatataagggttatacaagttgaaggaaccatgtttcaatgctcaaaggggtctcctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaa 23102109  T
Q  317 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 416  Q
    |||||||||||||||    ||||| |||||| || |||||||||| | |||||||||||||||||||| ||||||||| ||||||||  |  ||||||||    
T  23102108 cttcgcttaagcgacgtccagttcgcttaagtgatcggcttacagtaagtctgggttctgctcgcttacggttcgcttaagcgaactcttggcagaatca 23102009  T
Q  417 aaacggtttttcgct 431  Q
    ||  |||||||||||    
T  23102008 aattggtttttcgct 23101994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 295 - 395
Target Start/End: Original strand, 23878325 - 23878425
Alignment:
Q  295 aaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 393  Q
    ||||| |||||||||||| ||| ||||||||||||||| | |||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  23878325 aaaagtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgct 23878423  T
Q  394 tg 395  Q
    ||    
T  23878424 tg 23878425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 291 - 406
Target Start/End: Original strand, 21907750 - 21907865
Alignment:
Q  291 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 389  Q
    ||||||||| |||||||||||| ||| ||||||||||||||  | |||||| |||||||||||||||||||||| ||  |||||| ||||||| | ||||    
T  21907750 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagaaagttggggttccgctcgctaacggtt 21907848  T
Q  390 cgcttgagcgaacttct 406  Q
    ||||| |||||||||||    
T  21907849 cgcttaagcgaacttct 21907865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 201 - 352
Target Start/End: Original strand, 26884489 - 26884639
Alignment:
Q  201 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 299  Q
    ||||||||| |||| |||||||||| |||||||||| |||| ||||||||| | ||| ||||| | | |||||| |||||||||||||   |||| ||||    
T  26884489 agtaggatt-tgatgcctatacaagagttatacaagctaaaagaaacatttaaaaatactcaaaagggtcccctagtgcacgaagcaagg-ttcagaaag 26884586  T
Q  300 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 352  Q
    ||||||||||||||||| |||||||||||||  | ||| || |||||||||||    
T  26884587 aggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgacc 26884639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 218 - 363
Target Start/End: Original strand, 24660876 - 24661021
Alignment:
Q  218 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 316  Q
    ||||||| ||||||||||||| || ||||||||||| ||||||||| | | |||||| ||||||||||  ||||||||||||| ||||||||||| |       
T  24660876 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaag-taaaattcaaaaagtggctgactaagacctt 24660974  T
Q  317 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 363  Q
    ||| ||||||||||| | | | || ||||||||||||||| ||||||    
T  24660975 ctttgcttaagcgacggctggctcgcttaagcgaccggctcacagaa 24661021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 300 - 437
Target Start/End: Complemental strand, 5706759 - 5706610
Alignment:
Q  300 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 387  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||    
T  5706759 aggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacgg 5706660  T
Q  388 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 437  Q
    |||||||||||||||||   |||||||||||| |||||||||||||||||    
T  5706659 ttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 5706610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 291 - 393
Target Start/End: Original strand, 29281368 - 29281470
Alignment:
Q  291 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 390  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || ||    
T  29281368 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtc 29281467  T
Q  391 gct 393  Q
    |||    
T  29281468 gct 29281470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 267 - 374
Target Start/End: Complemental strand, 25181606 - 25181501
Alignment:
Q  267 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 366  Q
    ||||||| ||||||||||||| | |||| ||| |||||||||||  |||| |||||||||||||| | |||||  ||||||||||| |||||||| ||||    
T  25181606 gtcccctagtgcacgaagcaaga-ttcagaaa-aggctgactaacactcagttcgcttaagcgacggctagtttgcttaagcgaccagcttacagtaggt 25181509  T
Q  367 ctgggttc 374  Q
    ||||||||    
T  25181508 ctgggttc 25181501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 342 - 440
Target Start/End: Original strand, 23264515 - 23264613
Alignment:
Q  342 cttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttc 440  Q
    |||||||||||||||||||||  ||| |||||  ||||||| | ||||||||||||||||||||| ||| ||| |||| | ||||||||| || |||||    
T  23264515 cttaagcgaccggcttacagagagtcggggtttcgctcgctaacggttcgcttgagcgaacttctgacataatgaaaatgatttttcgcttacgggttc 23264613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 393
Target Start/End: Original strand, 9957 - 10050
Alignment:
Q  300 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 393  Q
    |||||| ||||  |||| || ||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  9957 aggctgtctaacactcagtttgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 10050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 331
Target Start/End: Original strand, 23264301 - 23264524
Alignment:
Q  103 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 202  Q
    |||||| ||||||||| | | ||||| |||||||| |||||||||| |||||||| ||| ||||||||  ||||| |||||||| ||||   |||| | |    
T  23264301 catcaagttcattcaacatagtatatgttcacttggtttcatactcgatcatctccaaa-ttcactaaactcaactaattcgattacca-agtgttttgg 23264398  T
Q  203 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 301  Q
    |||||||  |     |||| || ||||||||||||| || | ||||||| | ||||||||| | | |||||| |||||||| || ||| ||||||||| |    
T  23264399 taggatttag---tgtatataaaggttatacaagttgaaaggaacatttaaaaatgctcaaaaggatcccctagtgcacgaggc-aaagttcaaaaagtg 23264494  T
Q  302 gctgactaaggctca-cttcgcttaagcgac 331  Q
    ||||||||||| ||| |||||||||||||||    
T  23264495 gctgactaagg-tcatcttcgcttaagcgac 23264524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 363
Target Start/End: Complemental strand, 27208394 - 27208322
Alignment:
Q  291 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 363  Q
    |||| ||| ||||||||||||||||| |||||||||||||  | ||| || ||||||||||| ||| ||||||    
T  27208394 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacagaa 27208322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 363
Target Start/End: Complemental strand, 27210729 - 27210657
Alignment:
Q  291 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 363  Q
    |||| ||| ||||||||||||||||| |||||||||||||  | ||| || ||||||||||| ||| ||||||    
T  27210729 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacagaa 27210657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 166; Significance: 1e-88; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 29615186 - 29614738
Alignment:
Q  1 atatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcac 99  Q
    ||||||||||||||||  ||||  |||||| |||||||||||||||| ||||| || |   |||||||||||||||||||||||| |||||||||| |||    
T  29615186 atatctacatacaactcgactattacatatgtttcatatgacttactgctccgcaactc--aacaatccagaacatacacaattatttataattattcac 29615089  T
Q  100 atacatcaatttcattcaataaattatatat--------tcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcacca 191  Q
    ||||||||||  ||||| | |  ||||||||        ||||||| ||||||||||||||||||| || ||| ||||||| ||| |||||| ||||||     
T  29615088 atacatcaatcacattccacatgttatatatacacatattcacttgttttcatactcaatcatctccaacatttactaacaccaatcaattcaatcaccg 29614989  T
Q  192 gcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaat 291  Q
    ||| |||||| || ||||||| ||||||| | |||||||||| |||||||||||| ||| ||||||||||||||||| ||||| |||||||| ||||| |    
T  29614988 gctcgttctaataagattctgttacctatgccagggttatactagttaaaggaaatattatagaatgctcaagaagttccctcatgcacgaaacaaaagt 29614889  T
Q  292 tcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt-------- 383  Q
    ||| |   |||||||||||||||||||||||||||||||| | |||||| |||||||||||| ||||||| |||||||||||| ||||||||            
T  29614888 tcaga---aggctgactaaggctcacttcgcttaagcgacggctagttcgcttaagcgaccgacttacagtaggtctgggttcagctcgcttacgggttg 29614792  T
Q  384 ---agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 434  Q
       | ||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  29614791 ctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 29614738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 77 - 406
Target Start/End: Original strand, 25396343 - 25396671
Alignment:
Q  77 cacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaa 176  Q
    |||||||||| ||||| || |  || |||||| |||||||||   | |||||||||||||| |||||||||||||||| || ||||||||||||  ||||    
T  25396343 cacaattaataataatcatactaatgcatcaagttcattcaacctagtatatattcacttggtttcatactcaatcatatccaaaattcactaaattcaa 25396442  T
Q  177 ccaattcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcg 275  Q
    |||||||||| ||||   ||||  |||||||||| | | | ||||||||||||||||||||| || ||||||||||||||||||||| | | | |||| |    
T  25396443 ccaattcgattaccaatgtgtttcagtaggattcag-tgcatatacaagggttatacaagttgaaagaaacattttagaatgctcaaaaggattccctag 25396541  T
Q  276 tgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttct 375  Q
    ||||| |||| | ||||||||||| || |||||||| |  |||||||||||||||| | | | || |||||||||||| ||||||||  ||  ||||||     
T  25396542 tgcactaagc-ataattcaaaaagtggttgactaagacctacttcgcttaagcgacggctggctcgcttaagcgaccgacttacagagagttggggttcc 25396640  T
Q  376 gctcgcttagggttcgcttgagcgaacttct 406  Q
    ||||||| | ||||||||| || ||||||||    
T  25396641 gctcgctaacggttcgcttaagtgaacttct 25396671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 223 - 401
Target Start/End: Original strand, 18799754 - 18799932
Alignment:
Q  223 aagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcg 321  Q
    |||||||||||||||| || | ||||| || ||||||| || | | ||||||  |||| || |||||  ||||||||| |||||||||||| | ||||||    
T  18799754 aagggttatacaagttgaaaggaacatgtttgaatgctaaaaagggtcccctaatgcatgaggcaaag-ttcaaaaagtggctgactaaggttgacttcg 18799852  T
Q  322 cttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaa 401  Q
    |||||||||| | |||||| |||||||||||||||||||| | |||||||||| ||||||||| ||||||||| ||||||    
T  18799853 cttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttccgctcgcttacggttcgcttaagcgaa 18799932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 218 - 403
Target Start/End: Complemental strand, 21565936 - 21565751
Alignment:
Q  218 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 316  Q
    |||| |||||||||||||||| |||||| ||| ||  ||||||||| | | || |||  ||||||| ||||   ||||||||| ||||||||||||   |    
T  21565936 tatataagggttatacaagttgaaggaaccatgtttcaatgctcaaaagggtctcctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaa 21565838  T
Q  317 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaact 403  Q
    |||||||||||||||    ||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||    
T  21565837 cttcgcttaagcgacgtccagttcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttcgcttgagcgaact 21565751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 253 - 437
Target Start/End: Original strand, 12167637 - 12167832
Alignment:
Q  253 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 352  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  12167637 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 12167735  T
Q  353 ggcttacagaagg-tctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 437  Q
     |||||||| ||| ||||||||| | ||||||           | |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  12167736 agcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 12167832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 253 - 437
Target Start/End: Original strand, 19286546 - 19286741
Alignment:
Q  253 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 352  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19286546 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19286644  T
Q  353 ggcttacagaagg-tctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 437  Q
     |||||||| ||| ||||||||| | ||||||           | |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  19286645 agcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 19286741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 253 - 393
Target Start/End: Original strand, 19877730 - 19877870
Alignment:
Q  253 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 352  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19877730 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19877828  T
Q  353 ggcttacagaagg-tctgggttctgctcgcttagggttcgct 393  Q
     |||||||| ||| ||||||||| | ||||||| || |||||    
T  19877829 agcttacagtaggttctgggttcagttcgcttacgggtcgct 19877870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 253 - 437
Target Start/End: Original strand, 19883506 - 19883701
Alignment:
Q  253 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 352  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||| | ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19883506 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctaattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19883604  T
Q  353 ggcttacagaagg-tctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 437  Q
     |||||||| ||| ||||||||| | ||||||           | |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  19883605 agcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 19883701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 201 - 403
Target Start/End: Complemental strand, 19300509 - 19300308
Alignment:
Q  201 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 299  Q
    ||||||||| |||| ||||||||||||||||||||| |||| |||||| || | ||| ||||| | | |||||| ||||||||||||||  |||| | ||    
T  19300509 agtaggatt-tgatgcctatacaagggttatacaagctaaaagaaacacttaaaaatactcaaaagggtcccctagtgcacgaagcaaag-ttcagatag 19300412  T
Q  300 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttct-gctcgcttagggttcgcttgagc 398  Q
    |||||||||||||||||  ||||||||||||  | ||| || ||||||||||| || ||||| | || ||| |||| ||||||| | |||||||| ||||    
T  19300411 aggctgactaaggctcatctcgcttaagcgaagggtagctcgcttaagcgaccagc-tacaggaagtttggattctcgctcgctcacggttcgctcgagc 19300313  T
Q  399 gaact 403  Q
    |||||    
T  19300312 gaact 19300308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 253 - 374
Target Start/End: Complemental strand, 19786650 - 19786529
Alignment:
Q  253 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 352  Q
    |||| ||||||||||||||||| ||||  |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  19786650 agaacgctcaagaagtcccctcatgcattaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 19786552  T
Q  353 ggcttacagaagg-tctgggttc 374  Q
     |||||||| ||| |||||||||    
T  19786551 agcttacagtaggttctgggttc 19786529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 19786858 - 19786751
Alignment:
Q  1 atatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcac 99  Q
    ||||||||||||||||  ||||| |||||| | ||||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||||||||||    
T  19786858 atatctacatacaactcgactactacatatgtatcatatgacttactactcc-ataactcaaacaatccaga-cttacacaattatttataattatgcac 19786761  T
Q  100 atacatcaat 109  Q
    ||||||||||    
T  19786760 atacatcaat 19786751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 300 - 437
Target Start/End: Complemental strand, 34640724 - 34640575
Alignment:
Q  300 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 387  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||    
T  34640724 aggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacgg 34640625  T
Q  388 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 437  Q
    |||||||||||||||||   |||||||||||| |||||||||||||||||    
T  34640624 ttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 34640575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 300 - 437
Target Start/End: Complemental strand, 34647398 - 34647249
Alignment:
Q  300 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 387  Q
    ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||    
T  34647398 aggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacgg 34647299  T
Q  388 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 437  Q
    |||||||||||||||||   |||||||||||| |||||||||||||||||    
T  34647298 ttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 34647249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 395
Target Start/End: Complemental strand, 19472082 - 19471914
Alignment:
Q  226 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 324  Q
    ||||||||||||| |||||||||||| | ||||||||| | | |||||| ||||||||||| ||||||||||||| ||||||| ||| |   ||||||||    
T  19472082 ggttatacaagttgaaggaaacatttcaaaatgctcaaaaggatcccctagtgcacgaagc-aaaattcaaaaagtggctgac-aagaccttcttcgctt 19471985  T
Q  325 aagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 395  Q
    ||||||  | | | || ||||||||||||||| |||||| ||  |||||| ||||||| | || |||||||    
T  19471984 aagcgatggctggctcgcttaagcgaccggctcacagaaagttggggttccgctcgctaacggctcgcttg 19471914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 12167428 - 12167535
Alignment:
Q  1 atatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcac 99  Q
    ||||||||||||||||  || || |||||| | ||||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||||||||||    
T  12167428 atatctacatacaactcgaccactacatatgtatcatatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataattatgcac 12167525  T
Q  100 atacatcaat 109  Q
    ||||||||||    
T  12167526 atacatcaat 12167535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 19877521 - 19877628
Alignment:
Q  1 atatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcac 99  Q
    ||||||||||||||||  || || |||||| | ||||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||||||||||    
T  19877521 atatctacatacaactcgaccactacatatgtatcatatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataattatgcac 19877618  T
Q  100 atacatcaat 109  Q
    ||||||||||    
T  19877619 atacatcaat 19877628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 19883297 - 19883404
Alignment:
Q  1 atatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcac 99  Q
    ||||||||||||||||  || || |||||| | ||||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||||||||||    
T  19883297 atatctacatacaactcgaccactacatatgtatcatatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataattatgcac 19883394  T
Q  100 atacatcaat 109  Q
    ||||||||||    
T  19883395 atacatcaat 19883404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 342 - 437
Target Start/End: Complemental strand, 24513465 - 24513370
Alignment:
Q  342 cttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 437  Q
    ||||||||||||||| |||||| || ||||||| ||||||| | |||||||||||||||||||||   ||||| |||| | ||||||||| |||||    
T  24513465 cttaagcgaccggctcacagaaagtttgggttccgctcgctaacggttcgcttgagcgaacttctggaagaatgaaaatgatttttcgcttacagg 24513370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 19286337 - 19286444
Alignment:
Q  1 atatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcac 99  Q
    ||||||||||||||||  || || |||||| | | ||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||||||||||    
T  19286337 atatctacatacaactcgaccactacatatgtataatatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataattatgcac 19286434  T
Q  100 atacatcaat 109  Q
    ||||||||||    
T  19286435 atacatcaat 19286444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 393
Target Start/End: Complemental strand, 20008622 - 20008529
Alignment:
Q  300 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 393  Q
    |||||| ||||  |||| ||||||||||| || | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  20008622 aggctgtctaacactcagttcgcttaagcaacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 20008529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 437
Target Start/End: Complemental strand, 25470448 - 25470290
Alignment:
Q  291 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt------ 383  Q
    |||| ||| ||||||||||||| ||||||||||||||||||   |||||| |||||||||||  ||||||| ||| |||||| || | ||||||          
T  25470448 ttcagaaaaaggctgactaaggttcacttcgcttaagcgacgtctagttcgcttaagcgaccaacttacagtaggttctgggctcagttcgcttacgggt 25470349  T
Q  384 -----agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 437  Q
         | |||||||||||||||| ||   |||||||||||| |||||||||||||||||    
T  25470348 cgctcacggttcgcttgagcgaattttggacagaatcaaaatggtttttcgctcacagg 25470290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 435
Target Start/End: Complemental strand, 21365200 - 21365067
Alignment:
Q  313 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttaggg-----------ttcgcttgagcgaa 401  Q
    |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| ||           ||||||||||||||    
T  21365200 ctcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaa 21365101  T
Q  402 cttctaacagaatcaaaacggtttttcgctcaca 435  Q
    |||   |||||||||||| |||||||||||||||    
T  21365100 ctttggacagaatcaaaatggtttttcgctcaca 21365067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 435
Target Start/End: Complemental strand, 23969182 - 23969049
Alignment:
Q  313 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttaggg-----------ttcgcttgagcgaa 401  Q
    |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| ||           ||||||||||||||    
T  23969182 ctcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaa 23969083  T
Q  402 cttctaacagaatcaaaacggtttttcgctcaca 435  Q
    |||   |||||||||||| |||||||||||||||    
T  23969082 ctttggacagaatcaaaatggtttttcgctcaca 23969049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 437
Target Start/End: Complemental strand, 19786506 - 19786455
Alignment:
Q  386 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 437  Q
    |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  19786506 ggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 19786455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 435
Target Start/End: Original strand, 19877874 - 19877923
Alignment:
Q  386 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcaca 435  Q
    |||||||||||||||||||   ||||||| |||| |||||||||||||||    
T  19877874 ggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcaca 19877923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 331
Target Start/End: Original strand, 9186841 - 9186903
Alignment:
Q  268 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgac 331  Q
    |||||| ||||||||||||||  ||||||||| |||||||||||| ||| |||||||||||||||    
T  9186841 tcccctagtgcacgaagcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgac 9186903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 41456134 - 41455741
Alignment:
Q  1 atatctacatacaacttaactaca-catatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcac 99  Q
    |||||||||||||||| |||||   ||||| |||||||||||||||||||||| || | | |||||| |||||||| |||||||| |||||||||||| |    
T  41456134 atatctacatacaactcaactaatgcatatgtttcatatgacttactactccgtaact-caaacaattcagaacattcacaattatttataattatgcgc 41456036  T
Q  100 atacatcaatttcattcaataaattatatattcacttgat-ttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgtt 198  Q
     ||||||||||||||||||||  || ||||||||||| || ||| |||||||| ||||| || ||| ||||||| ||| |||||||||  ||||||||||    
T  41456035 ttacatcaatttcattcaatag-ttgtatattcacttaatcttcctactcaattatctccaacatttactaacaccaatcaattcgattgccagcttgtt 41455937  T
Q  199 ctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaa 298  Q
    |||||||||||||||||||||||| ||| |||||||||||||||   |  ||  |||| ||||| ||||||||||| ||||| |||||| | |||| |||    
T  41455936 ctagtaggattctgatacctatactaggattatacaagttaaagaggaagttaaagaacgctcaggaagtcccctcatgcactaagcaacagttcagaaa 41455837  T
Q  299 gaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgcttagggttcgct 393  Q
     ||||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| ||||||||| | ||||||| || |||||    
T  41455836 aaggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgct 41455741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 18914198 - 18914590
Alignment:
Q  1 atatctacatacaacttaactacacatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcaca 100  Q
    |||||||||||||||||||| | |||||| ||||||||||||||| |||||| || ||| ||||||||||||||||||||||||||||||||||||| ||    
T  18914198 atatctacatacaacttaacaatacatatgtttcatatgacttacaactccgcaa-ttccaacaatccagaacatacacaattaattataattatgctca 18914296  T
Q  101 tacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttct 200  Q
    |||||||||||||||||| | | |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||  ||  |||| |    
T  18914297 tacatcaatttcattcaacataatatatattcacttgatttcatactcaatcatctccaaaattcactaacatcaactaattccatcaatagagtgtttt 18914396  T
Q  201 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 299  Q
    ||||||||| || |   |||| || |||||||||||||  | |||| ||| |   |||||||| | | ||||||  ||||||| |||||||||| |||||    
T  18914397 agtaggattatg-tgtatatataaaggttatacaagttggaagaaatattattatatgctcaaaaggatcccctaatgcacgaggcaaaaattc-aaaag 18914494  T
Q  300 aggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 395  Q
     |||||||||||| ||| ||||||||||||||  |   |||| ||||||||||||||||| |||  ||  |||||| ||||||| | ||||||||||    
T  18914495 tggctgactaagg-tcatcttcgcttaagcgatggcaggttcgcttaagcgaccggcttatagagagttggggttccgctcgctaaaggttcgcttg 18914590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 291 - 431
Target Start/End: Complemental strand, 55499798 - 55499658
Alignment:
Q  291 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 390  Q
    ||||||||| |||||||||||    ||||||||||||||||   |||||| |||||||||||||||||||| | |||| ||||||||||||||| |||||    
T  55499798 ttcaaaaagtggctgactaagatcaacttcgcttaagcgacgtctagttcgcttaagcgaccggcttacagtaagtctaggttctgctcgcttacggttc 55499699  T
Q  391 gcttgagcgaacttctaacagaatcaaaacggtttttcgct 431  Q
    | |||||||||||  |  ||||||||||  |||||||||||    
T  55499698 gtttgagcgaactcttggcagaatcaaattggtttttcgct 55499658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 291 - 401
Target Start/End: Complemental strand, 16802139 - 16802029
Alignment:
Q  291 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 390  Q
    ||||||||| |||| |||||||   ||||||||||| |||| | ||| || |||||||||||||||||||| | |||||||||||||||||||| |||||    
T  16802139 ttcaaaaagtggctaactaaggtcaacttcgcttaaacgacggctagctcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacggttc 16802040  T
Q  391 gcttgagcgaa 401  Q
    |||||||||||    
T  16802039 gcttgagcgaa 16802029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 200 - 382
Target Start/End: Complemental strand, 13324562 - 13324381
Alignment:
Q  200 tagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaa 298  Q
    |||||||||| || ||||||||||||||||||| ||| | || ||||||| || |||||||||| | | ||||||  |||||||||||||| |||| |||    
T  13324562 tagtaggatt-tgttacctatacaagggttatataagctgaaagaaacatctttgaatgctcaaaagggtcccctaatgcacgaagcaaaa-ttcagaaa 13324465  T
Q  299 gaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgct 382  Q
    | ||||||||||||||||  ||||||||||||  | | | || |||||||||| ||||| ||||| || |||||| ||||||||    
T  13324464 gtggctgactaaggctcagctcgcttaagcgaaggctggctcgcttaagcgactggcttgcagaaagtttgggttttgctcgct 13324381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 301 - 434
Target Start/End: Original strand, 24192274 - 24192418
Alignment:
Q  301 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggtt-----------ctgctcgcttagggtt 389  Q
    ||||||||||||  ||||||||||||||||| | |||||| |||||||||||||||||||| | |||||||||           | | ||||| | ||||    
T  24192274 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttcaactcacttacggttcgctcacggtt 24192373  T
Q  390 cgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 434  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||    
T  24192374 cgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 24192418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 18136174 - 18136117
Alignment:
Q  61 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18136174 aacaatccagaacatacacaattaattataattatgctcatacatcaatttcattcaa 18136117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 200 - 331
Target Start/End: Complemental strand, 13302974 - 13302844
Alignment:
Q  200 tagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaa 298  Q
    |||||||||| || ||||||||||||||||||| ||| | || ||||||| || |||||||||| | | ||||||  |||||||||||||| |||| |||    
T  13302974 tagtaggatt-tgttacctatacaagggttatataagctgaaagaaacatctttgaatgctcaaaagggtcccctaatgcacgaagcaaaa-ttcagaaa 13302877  T
Q  299 gaggctgactaaggctcacttcgcttaagcgac 331  Q
    | ||||||||||||||||  |||||||||||||    
T  13302876 gtggctgactaaggctcagctcgcttaagcgac 13302844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 331
Target Start/End: Complemental strand, 13313650 - 13313520
Alignment:
Q  200 tagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaa 298  Q
    |||||||||| || ||||||||||||||||||| ||| | || ||||||| ||  ||||||||| | | ||||||  |||||||||||||| |||| |||    
T  13313650 tagtaggatt-tgttacctatacaagggttatataagctgaaagaaacatctttaaatgctcaaaagggtcccctaatgcacgaagcaaaa-ttcagaaa 13313553  T
Q  299 gaggctgactaaggctcacttcgcttaagcgac 331  Q
    | ||||||||||||||||  |||||||||||||    
T  13313552 gtggctgactaaggctcagctcgcttaagcgac 13313520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 18129660 - 18129607
Alignment:
Q  61 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcat 114  Q
    |||||| |||||||| ||||||||||||||||||||| | ||||||||||||||    
T  18129660 aacaattcagaacattcacaattaattataattatgctcgtacatcaatttcat 18129607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 393
Target Start/End: Original strand, 14865216 - 14865319
Alignment:
Q  291 ttcaaaaagaggctgactaaggctcacttcgcttaagcga-cagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 389  Q
    |||| ||| |||||||||||  |||| ||||||||||||| | | |||||| ||||||||||| ||||| || |||||||||||| | ||||||| || |    
T  14865216 ttcagaaaaaggctgactaacactcagttcgcttaagcgaacggctagttcgcttaagcgaccagcttagagtaggtctgggttcagttcgcttacgggt 14865315  T
Q  390 cgct 393  Q
    ||||    
T  14865316 cgct 14865319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 436
Target Start/End: Complemental strand, 10390083 - 10390034
Alignment:
Q  387 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacag 436  Q
    ||||||||||||||| ||   |||||||||||| ||||||||||||||||    
T  10390083 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacag 10390034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 436
Target Start/End: Complemental strand, 10415172 - 10415123
Alignment:
Q  387 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacag 436  Q
    ||||||||||||||| ||   |||||||||||| ||||||||||||||||    
T  10415172 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacag 10415123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 436
Target Start/End: Complemental strand, 10421842 - 10421793
Alignment:
Q  387 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacag 436  Q
    ||||||||||||||| ||   |||||||||||| ||||||||||||||||    
T  10421842 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacag 10421793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 401
Target Start/End: Complemental strand, 12034072 - 12034007
Alignment:
Q  336 agttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaa 401  Q
    ||||| ||||||||||| |||||||| |||||||||||  | ||||||| || |||||| ||||||    
T  12034072 agttcgcttaagcgaccagcttacagtaggtctgggtttagttcgcttacgggtcgcttaagcgaa 12034007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 170
Target Start/End: Original strand, 9533232 - 9533335
Alignment:
Q  66 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattc 165  Q
    ||||||| ||||||||||||| ||||| |  |  || ||| || ||||||||| | | ||||| |||||||  |||||||||||||||||||  ||||||    
T  9533232 tccagaaaatacacaattaatcataatcaaactaatgcataaagttcattcaacatagtatatgttcacttagtttcatactcaatcatctc-caaattc 9533330  T
Q  166 actaa 170  Q
    |||||    
T  9533331 actaa 9533335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 164 - 331
Target Start/End: Original strand, 241 - 407
Alignment:
Q  164 tcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaa 263  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| || |||| ||||||||||||||||    
T  241 tcactaacatcaaccaattcgatcaccagcgtgttctagtaggattctgatacctatacaaagtttatacaagttgaaagaaatattttagaatgctcaa 340  T
Q  264 gaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgac 331  Q
    || ||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||    
T  341 gatgtccccttgtgcacgaagc-aaaattcagaaagaggctgactaaggttcacttcgcttaagcgac 407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 164 - 331
Target Start/End: Original strand, 7386 - 7552
Alignment:
Q  164 tcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaa 263  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| || |||| ||||||||||||||||    
T  7386 tcactaacatcaaccaattcgatcaccagcgtgttctagtaggattctgatacctatacaaagtttatacaagttgaaagaaatattttagaatgctcaa 7485  T
Q  264 gaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgac 331  Q
    || ||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||    
T  7486 gatgtccccttgtgcacgaagc-aaaattcagaaagaggctgactaaggttcacttcgcttaagcgac 7552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 437
Target Start/End: Original strand, 409 - 504
Alignment:
Q  353 ggcttacagaaggtctgggttctgctcgcttagggttcgcttg-----------agcgaacttctaacagaatcaaaacggtttttcgctcacagg 437  Q
    ||||||||||| ||||||||||||||||||||||||||| |||           ||||||||||| |||||||||||| |||||||||||||||||    
T  409 ggcttacagaaagtctgggttctgctcgcttagggttcgtttgcggttcgcttaagcgaacttctgacagaatcaaaatggtttttcgctcacagg 504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 437
Target Start/End: Original strand, 7554 - 7649
Alignment:
Q  353 ggcttacagaaggtctgggttctgctcgcttagggttcgcttg-----------agcgaacttctaacagaatcaaaacggtttttcgctcacagg 437  Q
    ||||||||||| ||||||||||||||||||||||||||| |||           ||||||||||| |||||||||||| |||||||||||||||||    
T  7554 ggcttacagaaagtctgggttctgctcgcttagggttcgtttgcggttcgcttaagcgaacttctgacagaatcaaaatggtttttcgctcacagg 7649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 110948 - 111284
Alignment:
Q  1 atatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcac 99  Q
    |||||||||||||||| |||||  |||||||||||||||||||||||||||| | || || | ||||||||||| |||||||||| ||||||||| ||||    
T  110948 atatctacatacaactcaactattacatatatttcatatgacttactactcc-acaactcga-caatccagaacctacacaattatttataattacgcac 111045  T
Q  100 atacatcaatttcattcaataaattatatat--------tcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcacca 191  Q
    ||||||||||  ||||| | |  ||||||||        ||||||| |||||||| |||||||||| || ||| ||||||| ||| |||| | ||||||     
T  111046 atacatcaatcacattccacatgttatatatatacatattcacttgttttcatacacaatcatctccaacatttactaacaccaatcaatccaatcaccg 111145  T
Q  192 gcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaat 291  Q
    |||||||||| |||||||| | |||||| || |||||||||| |||||||||| | ||| ||||||||||||||||||||||| ||||| ||| || | |    
T  111146 gcttgttctaataggattcagttacctacaccagggttatactagttaaaggagaaattatagaatgctcaagaagtcccctcatgcactaagtaatagt 111245  T
Q  292 tcaaaaagaggctgactaaggctcacttcgcttaagcgac 331  Q
    ||| ||| |||||||||||| |||||||||||||||||||    
T  111246 tcagaaa-aggctgactaagactcacttcgcttaagcgac 111284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 393
Target Start/End: Complemental strand, 91881 - 91783
Alignment:
Q  295 aaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 393  Q
    |||| ||||| |||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  91881 aaaaaaggctaactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 91783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 393
Target Start/End: Complemental strand, 97607 - 97509
Alignment:
Q  295 aaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 393  Q
    |||| ||||| |||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  97607 aaaaaaggctaactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 97509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 434
Target Start/End: Original strand, 111330 - 111378
Alignment:
Q  386 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 434  Q
    |||||||||||||||||||   |||||||||||| ||||||||||||||    
T  111330 ggttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcac 111378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 128 - 393
Target Start/End: Original strand, 13742860 - 13743121
Alignment:
Q  128 tattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctatacaaggg 227  Q
    |||||||||| |||||||| |||||| ||| || ||| ||||||| |||  ||| | |||  | ||| |||||| |||||||| | |||||| || ||||    
T  13742860 tattcacttgttttcatacacaatcacctccaacatt-actaacaccaattaatccaatcctcggctcgttctaataggattcggttacctacaccaggg 13742958  T
Q  228 ttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaag 327  Q
    |||||| ||||||| |||| ||| ||||||||||||||||||||||| |||||||| ||||| |||| ||   |||||||||||||||||||||||||||    
T  13742959 ttatactagttaaaagaaatattatagaatgctcaagaagtcccctcatgcacgaaacaaaagttcagaa---ggctgactaaggctcacttcgcttaag 13743055  T
Q  328 cgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 393  Q
    |||| | |||||| ||||||||||||||||| || |||||||||||| ||||||||| || |||||    
T  13743056 cgacggctagttcgcttaagcgaccggcttatagtaggtctgggttcagctcgcttacgggtcgct 13743121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 13123958 - 13123506
Alignment:
Q  1 atatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcac 99  Q
    |||||||||||||||| |||||| ||||||||||||||||||||| |||||| | || || | |||| ||||||||||||||||| ||||||||||||||    
T  13123958 atatctacatacaactcaactactacatatatttcatatgacttaatactcc-acaactcga-caattcagaacatacacaattatttataattatgcac 13123861  T
Q  100 atacatcaatttcattca-------ataaat-tata--tattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcac 189  Q
    ||||||||||  |||||        ||| || ||||  |||||||||  || ||||| |||||| | | || ||| ||||| | ||| |||| | |||||    
T  13123860 atacatcaatcacattcctcatgttatacatatatacgtattcacttatttacatacacaatcaacaccaacatttactaataccaatcaatccaatcac 13123761  T
Q  190 cagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaa 289  Q
    | |||||||||| |||| ||||| |||||| || | |||||||| ||||||||   |  || ||||||||||||||||||||||| ||||| ||| || |    
T  13123760 cggcttgttctaataggcttctgctacctacaccaaggttatactagttaaagaggaagttatagaatgctcaagaagtcccctcatgcactaagtaata 13123661  T
Q  290 attcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt------ 383  Q
     |||| ||| |||||||||||| ||||||||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||          
T  13123660 gttcagaaa-aggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggt 13123562  T
Q  384 -----agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 434  Q
         | |||||||||||||||||||   |||||||||||| ||||||||||||||    
T  13123561 cgctcacggttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcac 13123506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 12710887 - 12710496
Alignment:
Q  1 atatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcac 99  Q
    |||||||||||||||| |||||| ||||||||||||||||||||| |||||| | || || | |||| ||||||||||||||||| ||||||||||||||    
T  12710887 atatctacatacaactcaactactacatatatttcatatgacttaatactcc-ataactcga-caattcagaacatacacaattatttataattatgcac 12710790  T
Q  100 atacatcaatttcattca-------ataaat-tata--tattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcac 189  Q
    ||||||||||  |||||        ||| || ||||  |||||||||  || ||||| |||||| | | || ||| ||||| | ||| |||| | |||||    
T  12710789 atacatcaatcacattcctcatgttatacatatatacgtattcacttatttacatacacaatcaacaccaacatttactaataccaatcaatccaatcac 12710690  T
Q  190 cagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaa 289  Q
    | ||||||| || |||| ||||  |||||| || | |||||||| ||||||||   |  || ||||||||||||||||||||||| ||||| ||| || |    
T  12710689 cggcttgttataataggcttcttctacctacaccaaggttatactagttaaagaggaagttatagaatgctcaagaagtcccctcatgcactaagtaata 12710590  T
Q  290 attcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctta 384  Q
     |||| ||| |||||||||||| ||||||||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | |||||||    
T  12710589 gttcagaaa-aggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgctta 12710496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 218 - 440
Target Start/End: Original strand, 16676623 - 16676845
Alignment:
Q  218 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 316  Q
    |||| |||||||||||||||| |||||| ||| ||  ||||||||| | | ||||||  ||||||| ||||   ||||||||| ||||||||||||   |    
T  16676623 tatataagggttatacaagttgaaggaaccatgtttcaatgctcaaaagggtcccctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaa 16676721  T
Q  317 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 416  Q
    |||||||||||||||   |||||| |||||||||||||||||||| | |||||||||| ||||||||| |||||||||||||||| |  | |||||||||    
T  16676722 cttcgcttaagcgacgactagttcgcttaagcgaccggcttacagtaagtctgggttccgctcgcttatggttcgcttgagcgaattcttgacagaatca 16676821  T
Q  417 aaacggtttttcgctcacaggttc 440  Q
    ||| ||||||||||| ||||||||    
T  16676822 aaatggtttttcgcttacaggttc 16676845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 218 - 440
Target Start/End: Original strand, 17650859 - 17651081
Alignment:
Q  218 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 316  Q
    |||| |||||||||||||||| |||||| ||| ||  ||||||||| | | ||||||  ||||||| ||||   ||||||||| ||||||||||||   |    
T  17650859 tatataagggttatacaagttgaaggaaccatgtttcaatgctcaaaagggtcccctaatgcacgaggcaacg-ttcaaaaagtggctgactaaggtcaa 17650957  T
Q  317 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 416  Q
    |||||||||||||||   |||||| |||||||||||||||||||| | |||||||||| ||||||||| |||||||||||||||| |  | |||||||||    
T  17650958 cttcgcttaagcgacgactagttcgcttaagcgaccggcttacagtaagtctgggttccgctcgcttatggttcgcttgagcgaattcttgacagaatca 17651057  T
Q  417 aaacggtttttcgctcacaggttc 440  Q
    ||| ||||||||||| ||||||||    
T  17651058 aaatggtttttcgcttacaggttc 17651081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 253 - 437
Target Start/End: Original strand, 13006706 - 13006901
Alignment:
Q  253 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 352  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  13006706 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 13006804  T
Q  353 ggcttacagaagg-tctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 437  Q
     |||||||| ||| ||||||||| | ||||||           | |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  13006805 agcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 13006901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 124 - 362
Target Start/End: Original strand, 46625166 - 46625403
Alignment:
Q  124 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 223  Q
    |||||||||| ||| |||||||||||||||| |  |||||||||||   ||||||||||| || ||||   ||||  |||||||||  | | | |||||     
T  46625166 tatatattcatttggtttcatactcaatcatattcaaaattcactatattcaaccaattcaattaccaatgtgtttcagtaggatttag-tgcatatacc 46625264  T
Q  224 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgc 322  Q
    ||||| ||||||||| || ||||||||||| ||||||||| | | | |||| ||||||||| ||||| |||||| || ||||||||||| |  |||||||    
T  46625265 agggtcatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacgaaacaaaa-ttcaaagagtggctgactaagacctacttcgc 46625363  T
Q  323 ttaagcgacagatagttcacttaagcgaccggcttacaga 362  Q
    ||||||||| | | | || ||||||||||| |||||||||    
T  46625364 ttaagcgacggctggctcgcttaagcgacctgcttacaga 46625403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 103 - 362
Target Start/End: Original strand, 13678649 - 13678906
Alignment:
Q  103 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 202  Q
    |||||| ||||||||| | | ||||| |||||||| | | ||||||||||||||  ||| ||||||||  ||||| |||||||| ||||   ||||  ||    
T  13678649 catcaagttcattcaacatagtatatgttcacttggtatgatactcaatcatcttcaaa-ttcactaaactcaactaattcgattaccaaagtgtttcag 13678747  T
Q  203 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 301  Q
    |||||||| | | | |||| || |||||||||| || || ||||||||||  ||||||||| | | ||||||  ||||||| |||||  ||||||||| |    
T  13678748 taggattcag-tgcatatataaaggttatacaaattgaaagaaacattttttaatgctcaaaaggatcccctaatgcacgaggcaaag-ttcaaaaagtg 13678845  T
Q  302 gctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 362  Q
    ||||||||||| ||| ||||||||||||||| | | |||| |||||||||||||||||||||    
T  13678846 gctgactaagg-tcatcttcgcttaagcgacggctggttcgcttaagcgaccggcttacaga 13678906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 13742719 - 13742803
Alignment:
Q  24 acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacatacatcaat 109  Q
    |||||| ||||||||||||||||||||| | || || |||||||||||||||||||||||| |||||||||||| |||||||||||    
T  13742719 acatatgtttcatatgacttactactcc-acaactcaaacaatccagaacatacacaattatttataattatgctcatacatcaat 13742803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 401
Target Start/End: Complemental strand, 11390020 - 11389910
Alignment:
Q  291 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 389  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| | ||| || |||||||||||| || |||| | |||||||||| ||||||||| ||||    
T  11390020 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagctcgcttaagcgaccgactcacagtaagtctgggttccgctcgcttacggtt 11389922  T
Q  390 cgcttgagcgaa 401  Q
    ||||||||||||    
T  11389921 cgcttgagcgaa 11389910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 395
Target Start/End: Complemental strand, 20311709 - 20311631
Alignment:
Q  317 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 395  Q
    ||||||||||||||| | ||| || |||||||||||||||| ||| | |||||||||||||||||||| ||||||||||    
T  20311709 cttcgcttaagcgacggctagctcgcttaagcgaccggcttgcagtaagtctgggttctgctcgcttacggttcgcttg 20311631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 437
Target Start/End: Complemental strand, 12591377 - 12591230
Alignment:
Q  302 gctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------agggtt 389  Q
    ||||||||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||||    
T  12591377 gctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggatctgggatcagttcgcttacgggtcgctcacggtt 12591278  T
Q  390 cgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 437  Q
    |||||||||||| ||   |||||||||||| |||||||||||||||||    
T  12591277 cgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacagg 12591230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 13006497 - 13006604
Alignment:
Q  1 atatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcac 99  Q
    ||||||||||||||||  || || |||||| | | ||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||||||||||    
T  13006497 atatctacatacaactcgaccactacatatgtataatatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataattatgcac 13006594  T
Q  100 atacatcaat 109  Q
    ||||||||||    
T  13006595 atacatcaat 13006604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 383
Target Start/End: Complemental strand, 11383554 - 11383440
Alignment:
Q  268 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 366  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||| | ||| || |||||||||| |||| |||| | ||    
T  11383554 tcccctagtgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagctcgcttaagcgacaggctcacagtaagt 11383457  T
Q  367 ctgggttctgctcgctt 383  Q
    |||||||| ||||||||    
T  11383456 ctgggttccgctcgctt 11383440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 291 - 393
Target Start/End: Original strand, 16090457 - 16090559
Alignment:
Q  291 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 390  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || ||    
T  16090457 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctgggttcagttcgcttacgggtc 16090556  T
Q  391 gct 393  Q
    |||    
T  16090557 gct 16090559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 363
Target Start/End: Complemental strand, 14320315 - 14320243
Alignment:
Q  291 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaa 363  Q
    |||| ||| ||||||||||||||||| |||||||||||||  | ||| || ||||||||||||||| ||||||    
T  14320315 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccggctcacagaa 14320243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 157
Target Start/End: Original strand, 18607248 - 18607339
Alignment:
Q  66 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctc 157  Q
    ||||||| ||||||||||||| ||||| |  |  || |||||| ||||||||| | | ||||| |||||||| |||||||||||||||||||    
T  18607248 tccagaaaatacacaattaatcataatcaaactaatgcatcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctc 18607339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 406
Target Start/End: Complemental strand, 21231643 - 21231554
Alignment:
Q  317 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttct 406  Q
    |||||||||||||||    ||||  ||||||||||| ||| |||||| ||  |||||| ||||||| | |||||||||||||||||||||    
T  21231643 cttcgcttaagcgacgaccagtttgcttaagcgaccagctcacagaaagttggggttccgctcgctgacggttcgcttgagcgaacttct 21231554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 170
Target Start/End: Original strand, 147453 - 147556
Alignment:
Q  66 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattc 165  Q
    ||||||| ||||||||||||| ||||| |  |  || |||||| ||||||||| | | || || |||||||| |||||||||||||||||||  ||||||    
T  147453 tccagaaaatacacaattaatcataatcaaactaatgcatcaagttcattcaacatagtacatgttcacttggtttcatactcaatcatctc-caaattc 147551  T
Q  166 actaa 170  Q
    |||||    
T  147552 actaa 147556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 393
Target Start/End: Original strand, 2464758 - 2464838
Alignment:
Q  313 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 393  Q
    |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  2464758 ctcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 2464838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 393
Target Start/End: Complemental strand, 3858087 - 3858007
Alignment:
Q  313 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 393  Q
    |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  3858087 ctcagttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 3858007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 435
Target Start/End: Complemental strand, 3858003 - 3857953
Alignment:
Q  386 ggttcgcttgagcgaacttctaacagaatc-aaaacggtttttcgctcaca 435  Q
    |||||||||||||||||||  ||||||||| |||| |||||||||||||||    
T  3858003 ggttcgcttgagcgaactttgaacagaatcaaaaatggtttttcgctcaca 3857953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 16475983 - 16475929
Alignment:
Q  66 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaata 120  Q
    ||||||| ||||||||||||| ||||| |||| |||||||| | |||||||||||    
T  16475983 tccagaaaatacacaattaatcataatcatgctcatacatcgagttcattcaata 16475929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 393
Target Start/End: Complemental strand, 29181780 - 29181690
Alignment:
Q  303 ctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 393  Q
    ||||||||  |||| || ||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  29181780 ctgactaacactcagtttgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctgggttcagttcgcttatgggtcgct 29181690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 384
Target Start/End: Original strand, 2966383 - 2966431
Alignment:
Q  336 agttcacttaagcgaccggcttacagaaggtctgggttctgctcgctta 384  Q
    ||||| ||||||||||| |||||||| |||||||||||| | |||||||    
T  2966383 agttcgcttaagcgaccagcttacagtaggtctgggttcagttcgctta 2966431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 434
Target Start/End: Complemental strand, 12710483 - 12710435
Alignment:
Q  386 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 434  Q
    |||||||||||||||||||   |||||||||||| ||||||| ||||||    
T  12710483 ggttcgcttgagcgaactttggacagaatcaaaatggtttttggctcac 12710435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 13318007 - 13318051
Alignment:
Q  61 aacaatccagaacatacacaattaattataattatgcacatacat 105  Q
    ||||||||||||  |||||||||||| |||||||||| |||||||    
T  13318007 aacaatccagaaattacacaattaatcataattatgcgcatacat 13318051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 384
Target Start/End: Complemental strand, 20907086 - 20907038
Alignment:
Q  336 agttcacttaagcgaccggcttacagaaggtctgggttctgctcgctta 384  Q
    ||||| ||||||||||| |||||||| |||||||||||| | |||||||    
T  20907086 agttcgcttaagcgaccagcttacagtaggtctgggttcagttcgctta 20907038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 124 - 437
Target Start/End: Complemental strand, 8046744 - 8046420
Alignment:
Q  124 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 223  Q
    |||||||||||||| |||||||| |||||||||| || ||| ||||||| ||| |||| | ||| || |||||||||| |||||||| | |||||| ||     
T  8046744 tatatattcacttgttttcatacacaatcatctccaacatttactaacaccaatcaatccaatcgccggcttgttctaataggattcggttacctacacc 8046645  T
Q  224 agggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgct 323  Q
    |||||||||| ||||||||   |  || ||||||||||||||||||||||| ||||| ||| || | |||| ||| ||||||||||||||||||||||||    
T  8046644 agggttatactagttaaagaggaagttatagaatgctcaagaagtcccctcatgcactaagtaacagttcagaaaaaggctgactaaggctcacttcgct 8046545  T
Q  324 taagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt-----------agggttcgcttgagcgaacttctaacaga 412  Q
    ||||||||   ||| || |||||||||||  |||| || |||||||||||| | ||||||           | |||||||||||||||||||   |||||    
T  8046544 taagcgacgtctagctcgcttaagcgaccaacttatagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacaga 8046445  T
Q  413 atcaaaacggtttttcgctcacagg 437  Q
    ||||||| |||||||||||||||||    
T  8046444 atcaaaatggtttttcgctcacagg 8046420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 317 - 440
Target Start/End: Original strand, 15407485 - 15407608
Alignment:
Q  317 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 416  Q
    ||||||||||||||| |  ||||| ||||||||||||||| |||||| |||| ||||| ||||||| | |||||||||||||||||||||  ||||||||    
T  15407485 cttcgcttaagcgacggccagttcgcttaagcgaccggctcacagaaagtctaggttccgctcgctgacggttcgcttgagcgaacttctggcagaatca 15407584  T
Q  417 aaacggtttttcgctcacaggttc 440  Q
    ||| ||||||||||| || |||||    
T  15407585 aaatggtttttcgcttacgggttc 15407608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 301 - 403
Target Start/End: Original strand, 14486052 - 14486154
Alignment:
Q  301 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcga 400  Q
    ||||||||||||||||||||||||||||||  | | | || |||||||||||||||||||||  || ||||||| ||||||| | |||||||||||||||    
T  14486052 ggctgactaaggctcacttcgcttaagcgaaggctggctcgcttaagcgaccggcttacagagagtttgggttccgctcgctcacggttcgcttgagcga 14486151  T
Q  401 act 403  Q
    |||    
T  14486152 act 14486154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 14555938 - 14555881
Alignment:
Q  61 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 118  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  14555938 aacaatccagaacaaacacaattaattataattatgctcatacatcaatttcattcaa 14555881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 212 - 352
Target Start/End: Original strand, 11847397 - 11847537
Alignment:
Q  212 gatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaa 310  Q
    |||||||||||||| |||||||||| || | |||||| ||   ||| ||||| | | |||||| |||||| |||||||  |||| |||||||||||||||    
T  11847397 gatacctatacaagagttatacaagctagaagaaacacttacaaatactcaaaagggtcccctagtgcacaaagcaaag-ttcagaaagaggctgactaa 11847495  T
Q  311 ggctcacttcgcttaagcgacagatagttcacttaagcgacc 352  Q
    ||||||  ||||||||||||| | |||||| |||||||||||    
T  11847496 ggctcagctcgcttaagcgacgggtagttcgcttaagcgacc 11847537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 14485975 - 14486037
Alignment:
Q  200 tagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaa 263  Q
    |||||||||| |||||||||||||||||||||||||| | || |||||||||||||||||||||    
T  14485975 tagtaggatt-tgatacctatacaagggttatacaagctgaaagaaacattttagaatgctcaa 14486037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 300 - 437
Target Start/End: Original strand, 53483022 - 53483171
Alignment:
Q  300 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-----------aggg 387  Q
    ||||||||||||| |||||||||||||||||| |  ||||| ||||||||||| |||||||| ||| |||||| || | ||||||           | ||    
T  53483022 aggctgactaaggttcacttcgcttaagcgacggcaagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacgg 53483121  T
Q  388 ttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 437  Q
    |||||||||||||||||   |||||||||||| |||||||||||||||||    
T  53483122 ttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 53483171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 8046884 - 8046777
Alignment:
Q  1 atatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcac 99  Q
    ||||||||||||||||  ||||  |||||||||||||||||||||||||||| | || || |  |||||| | |||||||||||| ||||||||||||||    
T  8046884 atatctacatacaactcgactattacatatatttcatatgacttactactcc-acaactc-agtaatccaaatcatacacaattatttataattatgcac 8046787  T
Q  100 atacatcaat 109  Q
    | ||||||||    
T  8046786 acacatcaat 8046777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 291 - 393
Target Start/End: Complemental strand, 16147514 - 16147412
Alignment:
Q  291 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 390  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || ||    
T  16147514 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctgggttcagttcgcttacgggtc 16147415  T
Q  391 gct 393  Q
    |||    
T  16147414 gct 16147412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 330
Target Start/End: Original strand, 8834185 - 8834297
Alignment:
Q  218 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 316  Q
    ||||||| ||||||||||||| || |||||||||||||| |||||| | | | | || ||||| |||||||||| |||||||| ||||||||||| |       
T  8834185 tatacaaaggttatacaagttgaaagaaacattttagaacgctcaaaaggattctctagtgcatgaagcaaaaa-tcaaaaagtggctgactaagacctt 8834283  T
Q  317 cttcgcttaagcga 330  Q
    ||||||||||||||    
T  8834284 cttcgcttaagcga 8834297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 384
Target Start/End: Original strand, 27905613 - 27905729
Alignment:
Q  267 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 366  Q
    |||||||  ||||||||||||||||||| |||| |||||||| |||||||  ||||||||||||  | ||| || ||||||||| | ||| ||| |||||    
T  27905613 gtcccctaatgcacgaagcaaaaattcagaaagtggctgact-aggctcagctcgcttaagcgaagggtagctcgcttaagcgatcagctcacaaaaggt 27905711  T
Q  367 ctgggttctgctcgctta 384  Q
      ||||| ||||||||||    
T  27905712 tggggttttgctcgctta 27905729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 362
Target Start/End: Original strand, 15244566 - 15244658
Alignment:
Q  270 ccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 362  Q
    |||| ||||||||||||||| ||||||||| ||||||||||| |   ||||| ||||||||| | |   || |||||||||||||||||||||    
T  15244566 ccctagtgcacgaagcaaaatttcaaaaagtggctgactaagaccttcttcgattaagcgacggttgactcgcttaagcgaccggcttacaga 15244658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 170
Target Start/End: Original strand, 18212523 - 18212623
Alignment:
Q  69 agaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcact 168  Q
    |||| ||||||||||||| ||||| |  |  || |||||| ||||||||| | | ||||| |||||||| |||||||||||||||||||  |||||||||    
T  18212523 agaaaatacacaattaatcataatcaaactaatgcatcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctc-caaattcact 18212621  T
Q  169 aa 170  Q
    ||    
T  18212622 aa 18212623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 392
Target Start/End: Original strand, 13887086 - 13887258
Alignment:
Q  220 tacaagggttatacaagttaaaggaaacatttt-agaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcac 317  Q
    ||||| ||||||||||||| || |||||||||| | |||| |||| | | | |||| ||||||||||||||| ||||||| | |||| |||||| |   |    
T  13887086 tacaaaggttatacaagttgaaagaaacatttttaaaatgttcaaaaggattccctagtgcacgaagcaaaa-ttcaaaa-gtggctaactaagaccttc 13887183  T
Q  318 ttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgc 392  Q
    |||||||||||||| | | | || ||||| |||||||||||||||  ||  | |||||||||||| | |||||||    
T  13887184 ttcgcttaagcgacggctggctcgcttaaacgaccggcttacagagagttggcgttctgctcgctaatggttcgc 13887258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 392
Target Start/End: Original strand, 13887943 - 13888115
Alignment:
Q  220 tacaagggttatacaagttaaaggaaacatttt-agaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcac 317  Q
    ||||| ||||||||||||| || |||||||||| | |||| |||| | | | |||| ||||||||||||||| ||||||| | |||| |||||| |   |    
T  13887943 tacaaaggttatacaagttgaaagaaacatttttaaaatgttcaaaaggattccctagtgcacgaagcaaaa-ttcaaaa-gtggctaactaagaccttc 13888040  T
Q  318 ttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgc 392  Q
    |||||||||||||| | | | || ||||| |||||||||||||||  ||  | |||||||||||| | |||||||    
T  13888041 ttcgcttaagcgacggctggctcgcttaaacgaccggcttacagagagttggcgttctgctcgctaatggttcgc 13888115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 362
Target Start/End: Original strand, 15307415 - 15307563
Alignment:
Q  218 tatacaagggttatacaagtt---aaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggc 313  Q
    ||||||| |||||||||||||   |||  |||||||||| ||||||| | | | | |||| ||||||||||||||  ||| ||||| ||||||||||| |    
T  15307415 tatacaaaggttatacaagttgaaaaaaaaaacattttaaaatgctcgaaaggattccctagtgcacgaagcaaagtttcgaaaagtggctgactaagac 15307514  T
Q  314 tcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 362  Q
       ||||||||||||||  | | | || |||||||||||| ||||||||    
T  15307515 cttcttcgcttaagcgatggctggctcgcttaagcgaccgacttacaga 15307563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 124 - 393
Target Start/End: Original strand, 324 - 592
Alignment:
Q  124 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 223  Q
    |||||||||||||| |||||||| | |||||||| || ||| ||||||| ||| |||| | |||||  |||||||||| |||||||| | |||||| ||     
T  324 tatatattcacttgttttcatacaccatcatctccaacatttactaacaccaatcaatccaatcactggcttgttctaataggattcggttacctacacc 423  T
Q  224 agggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgct 323  Q
    | |||||||| ||||||||   |  || ||||||||||||||||||||||| ||||| ||| || | |||| ||| |||||||||||| |||||||||||    
T  424 aaggttatactagttaaagaggaagttatagaatgctcaagaagtcccctcatgcactaagtaatagttcagaaa-aggctgactaagactcacttcgct 522  T
Q  324 taagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 393  Q
    |||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  523 taagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 162 - 269
Alignment:
Q  1 atatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcac 99  Q
    |||||||||||||||| |||||  |||||||||||||||||||||||||||| | |  || |||||||||||||||||||||||| ||||||||||||||    
T  162 atatctacatacaactcaactattacatatatttcatatgacttactactcc-acagctc-aacaatccagaacatacacaattatttataattatgcac 259  T
Q  100 atacatcaat 109  Q
    | ||||||||    
T  260 acacatcaat 269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 218 - 437
Target Start/End: Original strand, 10610 - 10829
Alignment:
Q  218 tatacaagggttatacaagttaaaggaaacattttagaatgct-caagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 316  Q
    |||| ||||||||||||||||||| |  |||| ||  |||||| ||||   ||||||  ||||||| |||||  ||||||||| |||||||||||    |    
T  10610 tatataagggttatacaagttaaaagggacatgtttaaatgctacaagggatcccctaatgcacgaggcaaag-ttcaaaaagtggctgactaagatcaa 10708  T
Q  317 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 416  Q
    ||||||||||||||| | ||| || |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10709 cttcgcttaagcgacggctagctcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttagggttcgcttgagcgaacttctgacagaatca 10808  T
Q  417 aaacggtttttcgctcacagg 437  Q
    ||| |||||||||||||||||    
T  10809 aaatggtttttcgctcacagg 10829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 9619 - 9167
Alignment:
Q  1 atatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcac 99  Q
    |||||||||||||||| |||||| ||||||||||||||||||||| |||||| | || || | |||||||||||||| ||||||| ||||||| ||||||    
T  9619 atatctacatacaactcaactactacatatatttcatatgacttaatactcc-acaactcga-caatccagaacatatacaattatttataatcatgcac 9522  T
Q  100 atacatcaatttcattca-------ataaat-tata--tattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcac 189  Q
    ||||||||||  ||||||       ||| || ||||  |||||||||  |||||||| |||||| | | || ||| |||||   ||| |||| |  ||||    
T  9521 atacatcaatcacattcatcatgttatacatatatacgtattcacttattttcatacacaatcaacaccaacatttactaatgccaatcaatccagtcac 9422  T
Q  190 cagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaaa 289  Q
    | |||||||||| |||| ||||| |||||| || | |||||||| ||||||||   |  ||  |||||||||||||||||||||| ||||| ||| ||||    
T  9421 cggcttgttctaataggcttctgctacctacaccaaggttatactagttaaagaggaagttacagaatgctcaagaagtcccctcatgcactaagtaaaa 9322  T
Q  290 attcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt------ 383  Q
     || | ||| |||||||||||| ||||||||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||          
T  9321 gtttagaaa-aggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttatgggt 9223  T
Q  384 -----agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 434  Q
         | |||||||||||||||||||   |||||||||||| ||||||||||||||    
T  9222 cgctcacggttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcac 9167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 7667 - 7517
Alignment:
Q  61 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaa 160  Q
    ||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||| | | |||||||||||||||||||||||||||||||||| ||    
T  7667 aacaacccagaacatacccaattaattataattatgctcatacatcaatttcattcaacatactatatattcacttgatttcatactcaatcatctccaa 7568  T
Q  161 aattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctg 212  Q
    ||||||||||| ||||| |||||||||||| |  | || |||||||||||||    
T  7567 aattcactaac-tcaactaattcgatcaccggagtattttagtaggattctg 7517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 213 - 402
Target Start/End: Original strand, 30194 - 30383
Alignment:
Q  213 atacctatacaagggttatacaagttaaaggaaacattttagaatgctcaaga-agtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaag 311  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||| |  ||||||| ||||||||||| |||||||| |||| |||||||||||    
T  30194 atacctatacaagggttatacaagttgaaagaaacattttagaatgctcaaaagggtcccctagtgcacgaagc-aaaattcagaaagtggctgactaag 30292  T
Q  312 gctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaac 402  Q
    |||||||||||||||||||  | | | || |||||||||||||||||||||| || | ||||  ||||||| | |||||||||||| ||||    
T  30293 gctcacttcgcttaagcgaaggttggctcgcttaagcgaccggcttacagaaagtttaggtttcgctcgctcacggttcgcttgagtgaac 30383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 23865624 - 23866026
Alignment:
Q  1 atatctacatacaacttaactaca-catatatttcatat-gacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgca 98  Q
    |||||||||||||||| |||||   |||||||||||||| |||||||||||||| || |   |||||| ||||||||||||||||| |||||||||||||    
T  23865624 atatctacatacaactcaactaatgcatatatttcatattgacttactactccgtaactc--aacaattcagaacatacacaattatttataattatgca 23865721  T
Q  99 catacatcaatttcattcaataaattata----------tattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatca 188  Q
    |||||||||||  |||||   |  |||||          |||||||||  || ||||| ||||||   | || ||| ||||| | ||| |||| | ||||    
T  23865722 catacatcaatcacattcctcatgttatacatatacacgtattcacttatttacatacacaatcaataccaacatttactaataccaatcaatccaatca 23865821  T
Q  189 ccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagcaaa 288  Q
    || |||||||||| |||| ||||| |||||| || | |||||||| ||||||||   |  || ||||||||||||||||||||||| ||||| ||| ||     
T  23865822 ccggcttgttctaataggcttctgctacctacaccaaggttatactagttaaagaggaagttatagaatgctcaagaagtcccctcatgcactaagtaat 23865921  T
Q  289 aattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggt 388  Q
    | |||| ||| |||||||||||| ||||||||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| ||     
T  23865922 agttcagaaaaaggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacggg 23866021  T
Q  389 tcgct 393  Q
    |||||    
T  23866022 tcgct 23866026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 317 - 440
Target Start/End: Complemental strand, 14057271 - 14057148
Alignment:
Q  317 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 416  Q
    ||||||||||||||| | ||| || ||||||||||||||| |||||| |||||||||| ||||||| | ||||||||||||||||||| |  ||||||||    
T  14057271 cttcgcttaagcgacggctagctcgcttaagcgaccggctcacagaaagtctgggttccgctcgctgacggttcgcttgagcgaacttatggcagaatca 14057172  T
Q  417 aaacggtttttcgctcacaggttc 440  Q
    ||| |||||||| ||||| |||||    
T  14057171 aaatggtttttcactcacgggttc 14057148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 317 - 440
Target Start/End: Original strand, 25111385 - 25111508
Alignment:
Q  317 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 416  Q
    ||||||||||||||| |  ||||| |||||||||||| || |||||| |||||||||| ||||||| | |||||||||||||||||||||  ||||||||    
T  25111385 cttcgcttaagcgacggccagttcgcttaagcgaccgactcacagaaagtctgggttccgctcgctgacggttcgcttgagcgaacttctggcagaatca 25111484  T
Q  417 aaacggtttttcgctcacaggttc 440  Q
    ||| ||||||||||| || |||||    
T  25111485 aaatggtttttcgcttacgggttc 25111508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 19902915 - 19902808
Alignment:
Q  1 atatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcac 99  Q
    |||||||||||||||| |||||| ||||||||||||||||||||| |||||| | || || | |||||||||||||||||||||| ||||||| ||||||    
T  19902915 atatctacatacaactcaactactacatatatttcatatgacttaatactcc-acaactcga-caatccagaacatacacaattatttataatcatgcac 19902818  T
Q  100 atacatcaat 109  Q
    ||||||||||    
T  19902817 atacatcaat 19902808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 19988045 - 19987990
Alignment:
Q  63 caatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 118  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  19988045 caatccagaacatacacaattaattacaattatgctcatacatcaatttcattcaa 19987990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 103 - 395
Target Start/End: Original strand, 18613409 - 18613697
Alignment:
Q  103 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 202  Q
    |||||| |||||||||   | ||||| ||||| || ||||||||||||||||||| ||| ||||||||  ||||| |||||||| ||||  |  ||| ||    
T  18613409 catcaagttcattcaacgtagtatatgttcacatggtttcatactcaatcatctccaaa-ttcactaaactcaactaattcgattaccaagtgtttc-ag 18613506  T
Q  203 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 301  Q
    |||||||| | |   |||| || ||||||||||||| || | ||||||||  ||||||||||| | |||||| |||||||| |||||  ||||||| | |    
T  18613507 taggattcag-tgtatatataaaggttatacaagttgaaaggaacatttttaaatgctcaagaggatcccctagtgcacgaggcaaag-ttcaaaa-gtg 18613603  T
Q  302 gctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 395  Q
    || |||||||| ||| ||||||||||||||| | | |||| ||||||||||| |||||||||  ||  |||||| ||||||| | ||||||||||    
T  18613604 gccgactaagg-tcatcttcgcttaagcgacggctggttcgcttaagcgacctgcttacagagagttggggttccgctcgctaacggttcgcttg 18613697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 393
Target Start/End: Complemental strand, 24321376 - 24321252
Alignment:
Q  267 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 366  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  24321376 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 24321279  T
Q  367 ctgggttctgctcgcttagggttcgct 393  Q
    |||||||| | ||||||| || |||||    
T  24321278 ctgggttcagttcgcttacgggtcgct 24321252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 218 - 387
Target Start/End: Original strand, 21931018 - 21931187
Alignment:
Q  218 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag--tcccctcgtgcacgaagcaaaaattcaaaaagaggctga-ctaaggct 314  Q
    ||||||| ||||||||||||| || ||||||||||||||||||| ||| |  | |||| ||| | |||||||||  |||||||| |||||| | |||||     
T  21931018 tatacaaaggttatacaagttgaaagaaacattttagaatgctc-agatggattccctagtggaggaagcaaaa--tcaaaaagtggctgaccaaaggcc 21931114  T
Q  315 cacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttaggg 387  Q
      ||||||||||||||  | | ||||||||||||||||| ||||||||  ||  | |||||||||||| ||||    
T  21931115 ttcttcgcttaagcgaaggctggttcacttaagcgaccgacttacagagagttggtgttctgctcgctaaggg 21931187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 437
Target Start/End: Original strand, 17054009 - 17054060
Alignment:
Q  386 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 437  Q
    |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  17054009 ggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 17054060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 20005473 - 20005423
Alignment:
Q  67 ccagaacatacacaattaattataattatgcacatacatcaatttcattca 117  Q
    |||||| ||||||||| ||| ||||| ||||||||||||||| ||||||||    
T  20005473 ccagaaaatacacaatcaatcataatcatgcacatacatcaagttcattca 20005423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 434
Target Start/End: Original strand, 23866030 - 23866078
Alignment:
Q  386 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 434  Q
    |||||||||||||||||||   |||||||||||| ||||||||| ||||    
T  23866030 ggttcgcttgagcgaactttggacagaatcaaaatggtttttcgatcac 23866078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 105 - 362
Target Start/End: Complemental strand, 82082 - 81826
Alignment:
Q  105 tcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagta 204  Q
    |||| ||||||||| | | |||||||||||||| |||||||||||| ||| || ||||||||||||  |||||||||||||  ||||   ||||  ||||    
T  82082 tcaagttcattcaacataatatatattcacttggtttcatactcaaacatatccaaaattcactaaattcaaccaattcgactaccaatgtgtttaagta 81983  T
Q  205 ggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggc 303  Q
    |||||| | | | ||||||||||||||||||||| || ||||||||||| ||||||||| | | | |||| ||| ||||||||||| ||||||||| |||    
T  81982 ggattcag-tgcatatacaagggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctggtgtacgaagcaaaa-ttcaaaaagtggc 81885  T
Q  304 tgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 362  Q
    |||||||| |  |||||||||||||||| | | | || |||||||||||| ||||||||    
T  81884 tgactaagacctacttcgcttaagcgacggctggctcgcttaagcgaccgacttacaga 81826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 291 - 393
Target Start/End: Complemental strand, 80174 - 80072
Alignment:
Q  291 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 390  Q
    |||| ||| |||||||||||  |||| |||||||||||||| | ||| || |||||||||||  ||||||| |||||||||||| | ||||||| || ||    
T  80174 ttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatcttacagtaggtctgggttcagttcgcttacgggtc 80075  T
Q  391 gct 393  Q
    |||    
T  80074 gct 80072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 103 - 419
Target Start/End: Original strand, 116052 - 116366
Alignment:
Q  103 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 202  Q
    |||||| ||||||||| | | ||||| |||||||||||||||||||||||||||||||| ||||||||  ||||| |||||||| ||||   ||||  ||    
T  116052 catcaagttcattcaacatagtatatgttcacttgatttcatactcaatcatctcaaaa-ttcactaaactcaactaattcgattaccaaggtgtttcag 116150  T
Q  203 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 301  Q
    |||||||| | |   |||| || ||||||||| ||| || ||||||||||| ||| ||||| | | |||||| |||||||| |||||  ||||||||  |    
T  116151 taggattcag-tgtgtatataaaggttatacaggttgaaagaaacattttaaaatactcaaaaggatcccctagtgcacgaggcaaag-ttcaaaaaatg 116248  T
Q  302 gctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcga 400  Q
    ||||||||||| ||| ||||||||||||||| | | |||| |||||||||||||||||||||  ||  || ||  ||||||| | |||||||||||||||    
T  116249 gctgactaagg-tcatcttcgcttaagcgacggctggttcgcttaagcgaccggcttacagagagttgggatttcgctcgctaacggttcgcttgagcga 116347  T
Q  401 acttctaacagaatcaaaa 419  Q
    |||||| ||||||| ||||    
T  116348 acttctgacagaatgaaaa 116366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 218 - 406
Target Start/End: Complemental strand, 129393 - 129204
Alignment:
Q  218 tatacaagggttatacaagttaaaggaaacattttagaa-tgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctc 315  Q
    ||||||| ||||||||||||| |||||||||||| | || ||||||| | | |||||| ||||||||||||||| ||||||||| ||||||||||| |      
T  129393 tatacaaaggttatacaagttgaaggaaacatttcaaaaatgctcaaaaggatcccctagtgcacgaagcaaaa-ttcaaaaagtggctgactaagacct 129295  T
Q  316 acttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttct 406  Q
     ||||||||||||||| | | | || ||||||||||||||| |||||| ||  |||||| ||||||| | ||||||||| |||||||||||    
T  129294 tcttcgcttaagcgacggctggctcgcttaagcgaccggctcacagaaagttggggttccgctcgctaacggttcgcttaagcgaacttct 129204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 78 - 406
Target Start/End: Original strand, 65265 - 65592
Alignment:
Q  78 acaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaac 177  Q
    ||||||||| ||||| || |  || |||||| ||||||||| | | |||||||||||||| |||||||||||||||  || ||||||||||||  | |||    
T  65265 acaattaataataatcatactaatgcatcaagttcattcaacatagtatatattcacttggtttcatactcaatcaaatccaaaattcactaaacttaac 65364  T
Q  178 caattcgatcaccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgt 276  Q
    ||||||||| ||||   |||| ||||||||||| | | | |||| ||  |||||||||||| || ||||||||||| |||| |||| | | |||||| ||    
T  65365 caattcgattaccaatgtgttttagtaggattcag-tgcatatataaaagttatacaagttgaaagaaacattttaaaatgttcaaaaggatcccctagt 65463  T
Q  277 gcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctg 376  Q
    |||||| |||||| ||||||||| ||||||||||||    || |||||||| ||| | | |||| |||||||||||||||||||||  ||  |||||| |    
T  65464 gcacgaggcaaaa-ttcaaaaagtggctgactaaggtcttctccgcttaagtgacggctggttcgcttaagcgaccggcttacagagagttggggttccg 65562  T
Q  377 ctcgcttagggttcgcttgagcgaacttct 406  Q
    |||||| | |||||| || |||||||||||    
T  65563 ctcgctaacggttcggttaagcgaacttct 65592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 1274 - 1336
Alignment:
Q  124 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgat 186  Q
    ||||| |||||||| |||||||||||||||| || |||| |||||||  ||||||||||||||    
T  1274 tatatgttcacttggtttcatactcaatcatatccaaaactcactaaattcaaccaattcgat 1336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 23527640 - 23528099
Alignment:
Q  1 atatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcac 99  Q
    ||||||||||||||||  || || |||||| | ||||||||||||||||||| | || || || |||||||| |  ||||||||| ||||||||||||||    
T  23527640 atatctacatacaactcgaccactacatatgtatcatatgacttactactcc-acaactcaaataatccaga-ctgacacaattatttataattatgcac 23527737  T
Q  100 atacatcaatttcattcaataaattatatat------------tcacttgatttcatactcaatcatctcaaaaattcactaacatcaacca-attcgat 186  Q
    ||||||||||  ||||| | |  ||||||||            ||||||| ||||| || ||| |||||| || ||| ||||||| ||| || || | |     
T  23527738 atacatcaatcacattccacatgttatatatatacatacatattcacttgctttcacacccaaacatctccaacatttactaacaccaatcatatccaaa 23527837  T
Q  187 caccagcttgttctagtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaagtcccctcgtgcacgaagca 286  Q
    |||| | |||||||| |||||||  | |||||| || |||||||||| ||||||||   |  ||  |||| ||||||||||||||||| ||||| |||||    
T  23527838 caccggattgttctaataggatttggttacctacaccagggttatactagttaaagaggaagttaaagaacgctcaagaagtcccctcatgcactaagca 23527937  T
Q  287 aaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaagg-tctgggttctgctcgctt-- 383  Q
    | | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| ||||||||||| |||||||| ||| ||||||||| | ||||||      
T  23527938 acagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttac 23528036  T
Q  384 ---------agggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 437  Q
             | |||||||||||||||||||   ||||||| |||| |||||||||||||||||    
T  23528037 gggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 23528099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 22232493 - 22232436
Alignment:
Q  61 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 118  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  22232493 aacaatccagaacatacacgattaattataattatgctcatacatcaatttcattcaa 22232436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 395
Target Start/End: Complemental strand, 18408685 - 18408521
Alignment:
Q  231 tacaagttaaaggaaacattttagaatgctcaaga-agtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcactt-cgcttaagc 328  Q
    |||||||| || | ||||||| | ||||||||| | | |||||| |||||||| |||||  ||||||||| |||||||||||| ||| || |||||||||    
T  18408685 tacaagttgaaaggaacatttaaaaatgctcaaaagaatcccctagtgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcattttcgcttaagc 18408588  T
Q  329 gacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 395  Q
    ||| | |||||  |||||||||||||||||||||| ||  |||||| ||||||| | ||||||||||    
T  18408587 gacggctagtttgcttaagcgaccggcttacagaaagttggggttccgctcgctaacggttcgcttg 18408521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 393
Target Start/End: Original strand, 19236294 - 19236374
Alignment:
Q  313 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 393  Q
    |||| |||||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  19236294 ctcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttatgggtcgct 19236374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 401
Target Start/End: Complemental strand, 22439369 - 22439310
Alignment:
Q  342 cttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaa 401  Q
    |||||||||||||||||||| | |||||||||||||||||||| ||||| ||| ||||||    
T  22439369 cttaagcgaccggcttacagtaagtctgggttctgctcgcttaaggttcacttaagcgaa 22439310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 374
Target Start/End: Original strand, 22460506 - 22460611
Alignment:
Q  267 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 366  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  22460506 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 22460603  T
Q  367 ctgggttc 374  Q
    ||||||||    
T  22460604 ctgggttc 22460611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 375
Target Start/End: Original strand, 34829432 - 34829539
Alignment:
Q  267 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 366  Q
    ||||||| ||||||||||||||  |||| ||| ||| ||||||||||||| |||||||||||||  | ||| || ||||||||||| ||| ||| |||||    
T  34829432 gtcccctagtgcacgaagcaaag-ttcagaaaaaggttgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacaaaaggt 34829530  T
Q  367 ctgggttct 375  Q
      |||||||    
T  34829531 tggggttct 34829539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 393
Target Start/End: Original strand, 22467130 - 22467254
Alignment:
Q  267 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 366  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| | |||||||||||| | |||||| ||||| ||||| |||||||| ||||    
T  22467130 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagtacgcttaagcgacggctagttcgcttaaccgaccagcttacagtaggt 22467227  T
Q  367 ctgggttctgctcgcttagggttcgct 393  Q
    |||||||| | ||||||| || |||||    
T  22467228 ctgggttcagttcgcttatgggtcgct 22467254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 366
Target Start/End: Original strand, 20781102 - 20781192
Alignment:
Q  275 gtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 366  Q
    ||||||||||||||| |||| ||| |||||||||||  || | |||||||||||||| | ||| || ||||||||||| ||| ||| |||||    
T  20781102 gtgcacgaagcaaaa-ttcagaaaaaggctgactaacacttagttcgcttaagcgacgggtagctcgcttaagcgaccagctcacacaaggt 20781192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 23112546 - 23112480
Alignment:
Q  103 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaa 170  Q
    |||||| ||||||||| | | ||||| |||||||| |||||||||||||||||||  |||||||||||    
T  23112546 catcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctc-caaattcactaa 23112480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 437
Target Start/End: Original strand, 20819639 - 20819689
Alignment:
Q  387 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 437  Q
    ||||||||||||||| ||   |||||||||||| |||||||||||||||||    
T  20819639 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacagg 20819689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 437
Target Start/End: Original strand, 20826739 - 20826789
Alignment:
Q  387 gttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacagg 437  Q
    ||||||||||||||| ||   |||||||||||| |||||||||||||||||    
T  20826739 gttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacagg 20826789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 20819456 - 20819488
Alignment:
Q  216 cctatacaagggttatacaagttaaaggaaaca 248  Q
    ||||||||||||||||||||| |||||||||||    
T  20819456 cctatacaagggttatacaagctaaaggaaaca 20819488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 20826556 - 20826588
Alignment:
Q  216 cctatacaagggttatacaagttaaaggaaaca 248  Q
    ||||||||||||||||||||| |||||||||||    
T  20826556 cctatacaagggttatacaagctaaaggaaaca 20826588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 393
Target Start/End: Complemental strand, 28890058 - 28889978
Alignment:
Q  313 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 393  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28890058 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28889978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 393
Target Start/End: Complemental strand, 28896762 - 28896682
Alignment:
Q  313 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 393  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28896762 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28896682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 393
Target Start/End: Complemental strand, 28910010 - 28909930
Alignment:
Q  313 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 393  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28910010 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28909930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 393
Target Start/End: Complemental strand, 28931702 - 28931622
Alignment:
Q  313 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 393  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28931702 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28931622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 393
Target Start/End: Complemental strand, 28946405 - 28946325
Alignment:
Q  313 ctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 393  Q
    |||| |||||||||||||| | ||  || |||||||||||  ||||||| |||||||||||| | ||||||| || |||||    
T  28946405 ctcagttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgct 28946325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 268 - 440
Target Start/End: Complemental strand, 752 - 581
Alignment:
Q  268 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 366  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||| | |||||| |||||||||||||||||||||| ||    
T  752 tcccctagtgcacgacgcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgaccggcttacagaaagt 655  T
Q  367 ctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttc 440  Q
      |||||  ||||||| | ||||||||||||||||||||| ||||||| |||  | ||||||||| || |||||    
T  654 tggggtttcgctcgctgacggttcgcttgagcgaacttctgacagaatgaaattgatttttcgcttacgggttc 581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 352
Target Start/End: Complemental strand, 7688 - 7605
Alignment:
Q  268 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgacc 352  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||| | |||||| |||||||||||    
T  7688 tcccctagtgcacgacgcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgacc 7605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 103 - 441
Target Start/End: Complemental strand, 15856 - 15521
Alignment:
Q  103 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 202  Q
    |||||| ||||||||| | | ||||| |||||||| ||||||||||||||||||| ||| ||||||||  ||||| |||||||| ||||   ||||  ||    
T  15856 catcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctccaaa-ttcactaaactcaactaattcgattaccaaagtgtttcag 15758  T
Q  203 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 301  Q
    || ||||| | | | |||| || ||||||||||||| || ||||||||||  ||||||||| | | || ||| |||||||| || ||| ||| ||||| |    
T  15757 tatgattcag-tgcatatataaaggttatacaagttgaaagaaacatttttaaatgctcaaaaggatctcctagtgcacgaggc-aaagttc-aaaagtg 15661  T
Q  302 gctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcga 400  Q
    ||||||||||| ||| ||||||||||||||| | | |||| |||||||||||| |||| |||  || ||||||  | ||||| | |||||||||||||||    
T  15660 gctgactaagg-tcatcttcgcttaagcgacggttggttcgcttaagcgaccgtcttatagagagtttgggtttcgttcgctaacggttcgcttgagcga 15562  T
Q  401 acttctaacagaatcaaaacggtttttcgctcacaggttct 441  Q
    |||||| ||| |||  ||| | ||||||||| || ||||||    
T  15561 acttctgacataatggaaatgatttttcgcttacgggttct 15521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 301 - 434
Target Start/End: Complemental strand, 15121 - 14977
Alignment:
Q  301 ggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctt-----------agggtt 389  Q
    ||||||||||||  ||||||||||||||||| | |||||| |||||||||||||||||||| | |||||||||| ||||||||           | ||||    
T  15121 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttcagctcgcttacggttcgctcacggtt 15022  T
Q  390 cgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 434  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||    
T  15021 cgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 14977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 218 - 362
Target Start/End: Original strand, 1117 - 1261
Alignment:
Q  218 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 316  Q
    ||||||| ||||||||||||| || ||||||||||| ||||||||| | | |||||| ||||||||||||||| ||||||||| ||||||||||| | |     
T  1117 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaagcaaaa-ttcaaaaagtggctgactaagaccct 1215  T
Q  317 cttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 362  Q
    ||||||||||||||| | | | || ||||||||||||||| |||||    
T  1216 cttcgcttaagcgacggctggctcgcttaagcgaccggctcacaga 1261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 268 - 440
Target Start/End: Original strand, 18712098 - 18712270
Alignment:
Q  268 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 366  Q
    |||||| |||||||| |||||| ||||||| | |||||||||||| ||| ||||||||||||||| | |||||| ||||||||||| |||||||||| ||    
T  18712098 tcccctagtgcacgaggcaaaagttcaaaaggtggctgactaagg-tcatcttcgcttaagcgacggctagttcgcttaagcgaccagcttacagaaagt 18712196  T
Q  367 ctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttc 440  Q
      |||||| ||||||| | ||| ||||| ||||||||||| ||||||| |||  | ||||||||| || |||||    
T  18712197 tggggttccgctcgctaacggtacgcttaagcgaacttctgacagaatgaaattgatttttcgcttacgggttc 18712270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 253 - 393
Target Start/End: Original strand, 41111214 - 41111354
Alignment:
Q  253 agaatgctcaagaagtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 352  Q
    |||| ||||||||||||||||| ||||| |||||| | |||| ||| ||||||| ||||| |||||||||||||||||| | |||||| |||||||||||    
T  41111214 agaacgctcaagaagtcccctcatgcactaagcaacagttcagaaa-aggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgacc 41111312  T
Q  353 ggcttacagaagg-tctgggttctgctcgcttagggttcgct 393  Q
     |||||||| ||| ||||||||| | ||||||| || |||||    
T  41111313 agcttacagtaggttctgggttcagttcgcttacgggtcgct 41111354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 20941714 - 20941657
Alignment:
Q  61 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20941714 aacaatccagaacatacacaattaattataattatgctcatacatcaatttcattcaa 20941657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 267 - 393
Target Start/End: Original strand, 21710167 - 21710292
Alignment:
Q  267 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 366  Q
    ||||||| ||| ||||||||| | |||  ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  21710167 gtcccctagtgtacgaagcaaga-ttcggaaaaaggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 21710265  T
Q  367 ctgggttctgctcgcttagggttcgct 393  Q
    |||||||| | ||||||| ||||||||    
T  21710266 ctgggttcagttcgcttatggttcgct 21710292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 41111005 - 41111112
Alignment:
Q  1 atatctacatacaacttaactac-acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcac 99  Q
    ||||||||||||||||  || || |||||| | ||||||||||||||||||| | || || ||||||||||| | |||||||||| ||||||||||||||    
T  41111005 atatctacatacaactcgaccactacatatgtatcatatgacttactactcc-acaactcaaacaatccaga-cttacacaattatttataattatgcac 41111102  T
Q  100 atacatcaat 109  Q
    ||||||||||    
T  41111103 atacatcaat 41111112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 352
Target Start/End: Original strand, 19961472 - 19961622
Alignment:
Q  201 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 299  Q
    ||||||||| |||| ||||||||||||||||||||| |||| ||||||  | | ||| ||||| | | |||||| ||||||||||||||  |||| | ||    
T  19961472 agtaggatt-tgatgcctatacaagggttatacaagctaaaagaaacacgtaaaaatactcaaaagggtcccctagtgcacgaagcaaag-ttcagatag 19961569  T
Q  300 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 352  Q
    |||||||||||||||||  ||||||||||||  | ||| || |||||||||||    
T  19961570 aggctgactaaggctcatctcgcttaagcgaagggtagctcgcttaagcgacc 19961622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 389
Target Start/End: Complemental strand, 22030504 - 22030333
Alignment:
Q  218 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 316  Q
    ||||||| ||||||||||||| || |||||||| |||||||||||| | | |  ||| ||||| |||||||||||| |||||| ||||||||||| |       
T  22030504 tatacaaaggttatacaagttgaaagaaacattatagaatgctcaaaaggatttcctagtgcaagaagcaaaaatt-aaaaagtggctgactaagacctt 22030406  T
Q  317 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 389  Q
    ||||||||||||||  | | | || |||||||||| ||||||||||  ||  | |||||||||||| ||||||    
T  22030405 cttcgcttaagcgaaggctggctcgcttaagcgactggcttacagagagttggtgttctgctcgctaagggtt 22030333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 393
Target Start/End: Complemental strand, 20851838 - 20851714
Alignment:
Q  267 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 366  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  20851838 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 20851741  T
Q  367 ctgggttctgctcgcttagggttcgct 393  Q
    |||||||| | ||||||| || |||||    
T  20851740 ctgggttcagttcgcttatgggtcgct 20851714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 267 - 393
Target Start/End: Original strand, 21705625 - 21705749
Alignment:
Q  267 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 366  Q
    ||||||| ||| ||||||||| | |||| ||| |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| ||||    
T  21705625 gtcccctagtgtacgaagcaaga-ttcagaaa-aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggt 21705722  T
Q  367 ctgggttctgctcgcttagggttcgct 393  Q
    |||||||| | ||||||| || |||||    
T  21705723 ctgggttcagttcgcttacgggtcgct 21705749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 393
Target Start/End: Complemental strand, 20858434 - 20858341
Alignment:
Q  300 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 393  Q
    |||||| ||||  |||| |||||||||||||| | |||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  20858434 aggctgtctaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 20858341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 103 - 331
Target Start/End: Original strand, 11157328 - 11157554
Alignment:
Q  103 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 202  Q
    |||||| ||||||||| | | ||||| |||||||| ||||||||||||||||||  ||| ||||||||  || || |||||||| ||||   ||||  ||    
T  11157328 catcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatcttcaaa-ttcactaaactcgactaattcgattaccaaagtgtttcag 11157426  T
Q  203 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 301  Q
    |||||||  | |   |||| |||||||||||||||| || ||||||||||  ||||||||| | | ||||||  ||||||| || ||| ||||||||| |    
T  11157427 taggatttag-tgtatatataagggttatacaagttgaaagaaacatttttaaatgctcaaaaggatcccctaatgcacgaggc-aaagttcaaaaagtg 11157524  T
Q  302 gctgactaaggctca-cttcgcttaagcgac 331  Q
    | ||||||||| ||| |||||||||||||||    
T  11157525 gttgactaagg-tcatcttcgcttaagcgac 11157554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 20438327 - 20438224
Alignment:
Q  66 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattc 165  Q
    ||||||| ||||||||||||| ||||| |  |  || ||| || ||||||||| | | ||||| |||||||| |||||||||||||||||||  ||||||    
T  20438327 tccagaaaatacacaattaatcataatcaaactaatgcataaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctc-caaattc 20438229  T
Q  166 actaa 170  Q
    |||||    
T  20438228 actaa 20438224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 435
Target Start/End: Original strand, 41111358 - 41111407
Alignment:
Q  386 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcaca 435  Q
    |||||||||||||||||||   ||||||| |||| |||||||||||||||    
T  41111358 ggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcaca 41111407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 291 - 440
Target Start/End: Complemental strand, 35010 - 34861
Alignment:
Q  291 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 389  Q
    ||||||||| |||||||||||| ||| ||||||||||||||  | |||||| |||||||||||||||||||||| ||   ||||| ||||||| | ||||    
T  35010 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagaaagttgaggttccgctcgctgacggtt 34912  T
Q  390 cgcttgagcgaacttctaacagaatcaaaacggtttttcgctcacaggttc 440  Q
    ||||||||||||||||| ||||||| |||  | ||||||||| || |||||    
T  34911 cgcttgagcgaacttctgacagaatgaaattgatttttcgcttacgggttc 34861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 427
Target Start/End: Complemental strand, 15633 - 15475
Alignment:
Q  268 tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 366  Q
    |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||||  | ||| ||||||||||||| |||| |||||| ||    
T  15633 tcccctagtgcacgaggcaaat-ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgatggctagctcacttaagcgactggctcacagaaagt 15536  T
Q  367 ctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatcaaaacggttttt 427  Q
      |||||| ||||||| | |||||||||||||||||||||  |||||| |||| |||||||    
T  15535 tggggttccgctcgctgacggttcgcttgagcgaacttctggcagaatgaaaatggttttt 15475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 427
Target Start/End: Complemental strand, 23328 - 23192
Alignment:
Q  291 ttcaaaaagaggctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggtt 389  Q
    ||||||||| |||||||||||| ||| ||||||||||||||| | ||| || |||| || ||||||| |||||| ||  ||||||  |||||| | ||||    
T  23328 ttcaaaaagtggctgactaagg-tcatcttcgcttaagcgacggctagctcgcttaggcaaccggctcacagaaagttggggttcaactcgctgacggtt 23230  T
Q  390 cgcttgagcgaacttctaacagaatcaaaacggttttt 427  Q
    |||||||||||||||||  |||||| |||| |||||||    
T  23229 cgcttgagcgaacttctggcagaatgaaaatggttttt 23192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1061 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold1061
Description:

Target: scaffold1061; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 124 - 331
Target Start/End: Original strand, 1607 - 1813
Alignment:
Q  124 tatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctagtaggattctgatacctataca 223  Q
    |||||||||||||| ||||||||||| | || || ||||||||||||  |||||||| ||||| ||||   ||||| |||||||||| |     |||| |    
T  1607 tatatattcacttggtttcatactcactgatatccaaaattcactaaattcaaccaactcgattaccaatgtgttc-agtaggattcaggggtatatata 1705  T
Q  224 agggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcg 321  Q
    | ||| ||||||||| || ||||||||||| ||||||||| | | |||||| |||||||| || ||||||||||||| |||||||||||| ||| |||||    
T  1706 aaggtcatacaagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaggc-aaaattcaaaaagtggctgactaagg-tcatcttcg 1803  T
Q  322 cttaagcgac 331  Q
    ||||||||||    
T  1804 cttaagcgac 1813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 103 - 362
Target Start/End: Original strand, 542 - 799
Alignment:
Q  103 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 202  Q
    |||||| ||||||||| | | ||||| |||||||| | | ||||||||||||||  ||| ||||||||  ||||| |||||||| ||||   ||||  ||    
T  542 catcaagttcattcaacatagtatatgttcacttggtatgatactcaatcatcttcaaa-ttcactaaactcaactaattcgattaccaaagtgtttcag 640  T
Q  203 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 301  Q
    |||||||| | | | |||| || |||||||||| || || ||||||||||  ||||||||| | | ||||||  ||||||| |||||  ||||||||| |    
T  641 taggattcag-tgcatatataaaggttatacaaattgaaagaaacattttttaatgctcaaaaggatcccctaatgcacgaggcaaag-ttcaaaaagtg 738  T
Q  302 gctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 362  Q
    ||||||||||| ||| ||||||||||||||| | | |||| |||||||||||||||||||||    
T  739 gctgactaagg-tcatcttcgcttaagcgacggctggttcgcttaagcgaccggcttacaga 799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 317 - 434
Target Start/End: Original strand, 6907 - 7024
Alignment:
Q  317 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 416  Q
    ||||||||||||||| | ||| || |||||||||||||||||||| | |||||||||||||||||||| | ||||||||||| || | ||  ||||||||    
T  6907 cttcgcttaagcgacggctagctcgcttaagcgaccggcttacagtaagtctgggttctgctcgcttacgattcgcttgagcaaattcctggcagaatca 7006  T
Q  417 aaacggtttttcgctcac 434  Q
    ||| ||||  ||||||||    
T  7007 aaaaggttcctcgctcac 7024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 303 - 431
Target Start/End: Complemental strand, 4281 - 4153
Alignment:
Q  303 ctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaac 402  Q
    ||||||||||   ||||||||||||||||   |||||| ||||||||| | |||||||| | |||||||||||||||| ||| |||||||||||||||||    
T  4281 ctgactaaggtcaacttcgcttaagcgacgtctagttcgcttaagcgatcagcttacagtaagtctgggttctgctcgattacggttcgcttgagcgaac 4182  T
Q  403 ttctaacagaatcaaaacggtttttcgct 431  Q
    |  |  ||||||||||  |||||||||||    
T  4181 tcttggcagaatcaaattggtttttcgct 4153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 18024 - 17972
Alignment:
Q  61 aacaatccagaacatacacaattaattataattatgcacatacatcaatttca 113  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18024 aacaatccagaacatacacaattaattataattatgctcatacatcaatttca 17972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 23657 - 23605
Alignment:
Q  61 aacaatccagaacatacacaattaattataattatgcacatacatcaatttca 113  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23657 aacaatccagaacatacacaattaattataattatgctcatacatcaatttca 23605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 231 - 395
Target Start/End: Original strand, 16083 - 16247
Alignment:
Q  231 tacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca-cttcgcttaagc 328  Q
    |||||||| || | ||||||| | ||||||||| | | |||||| |||||||| |||||  ||||||||| |||||||||||| ||| ||||||||||||    
T  16083 tacaagttgaaaggaacatttaaaaatgctcaaaaggatcccctagtgcacgaggcaaag-ttcaaaaagtggctgactaagg-tcatcttcgcttaagc 16180  T
Q  329 gacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 395  Q
    ||| | ||| || |||||||||||||||||||||| ||  |||||| ||||||| | ||||||||||    
T  16181 gacggttagctcgcttaagcgaccggcttacagaaagttggggttccgctcgctaacggttcgcttg 16247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 267 - 393
Target Start/End: Complemental strand, 4377 - 4253
Alignment:
Q  267 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 366  Q
    ||||||| ||||||||||||| | |||| ||| ||||||||||| ||||| |||||||||||||  | |||||| ||||||||||| |||||||| ||||    
T  4377 gtcccctagtgcacgaagcaaga-ttcagaaa-aggctgactaacgctcagttcgcttaagcgatggctagttcgcttaagcgaccagcttacagtaggt 4280  T
Q  367 ctgggttctgctcgcttagggttcgct 393  Q
    |||||||| | ||||||| || |||||    
T  4279 ctgggttcagttcgcttacgggtcgct 4253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 103 - 403
Target Start/End: Complemental strand, 102787 - 102489
Alignment:
Q  103 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaacatcaaccaattcgatcaccagcttgttctag 202  Q
    |||||| ||||||||| | | ||||| |||||||| ||||||||||||||||||| ||| || |||||  ||||| |||||||| ||||   ||||   |    
T  102787 catcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctccaaattt-actaaactcaactaattcgattaccaaggtgtttctg 102689  T
Q  203 taggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagag 301  Q
    ||||| || | |   |||| || ||||||||| ||| || ||||| ||||| ||| ||||| | | |||||| |||||||| ||||   ||||||||| |    
T  102688 taggactcag-tgtgtatataaaggttatacaggttgaaagaaaccttttaaaatactcaaaaggatcccctagtgcacgaggcaagg-ttcaaaaagtg 102591  T
Q  302 gctgactaaggctca-cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcga 400  Q
    || |||||||| ||| ||||||||||||||  | | |||| |||||||||||| ||||||||| ||  |||||| ||||||| | |||||||||||||||    
T  102590 gccgactaagg-tcatcttcgcttaagcgatggctggttcgcttaagcgaccgacttacagaaagttggggttccgctcgctgacggttcgcttgagcga 102492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 1584 - 1527
Alignment:
Q  61 aacaatccagaacatacacaattaattataattatgcacatacatcaatttcattcaa 118  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  1584 aacaatccagaacatacacaattaattaaaattatgctcatacatcaatttcattcaa 1527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 174524 - 174440
Alignment:
Q  24 acatatatttcatatgacttactactccgaaaattctaacaatccagaacatacacaattaattataattatgcacatacatcaat 109  Q
    |||||| ||||| |||||||||| ||||| || | | |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  174524 acatatttttcaaatgacttactgctccgcaact-caaacaatccagaacatacacaattatttataattatgcacatacatcaat 174440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 201 - 352
Target Start/End: Complemental strand, 493800 - 493650
Alignment:
Q  201 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 299  Q
    ||||||||| |||| |||||||||| |||||||||| |||| ||||||||| | ||| ||||| | | |||||| |||||||||||||   |||| |||     
T  493800 agtaggatt-tgatgcctatacaagagttatacaagctaaaagaaacatttaaaaatactcaaaagggtcccctagtgcacgaagcaagg-ttcagaaaa 493703  T
Q  300 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 352  Q
    ||||||||||||||||| |||||||||||||  | ||| || |||||||||||    
T  493702 aggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgacc 493650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 362
Target Start/End: Original strand, 525062 - 525205
Alignment:
Q  218 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag--tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctc 315  Q
    ||||||| ||||||||||||| || ||||||||| ||||||||| ||| |  | |||| ||||| ||| |||||  |||||| | ||||||| |||||      
T  525062 tatacaaaggttatacaagttgaaagaaacatttcagaatgctc-agatggattccctagtgcaggaaacaaaa--tcaaaatgtggctgaccaaggcct 525158  T
Q  316 acttcgcttaagcgacagatagttcacttaagcgaccggcttacaga 362  Q
     ||||||||||||||  | | |||| |||||||||||| ||||||||    
T  525159 tcttcgcttaagcgaaggctggttcgcttaagcgaccgtcttacaga 525205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 291 - 395
Target Start/End: Complemental strand, 3975 - 3871
Alignment:
Q  291 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttc 390  Q
    ||||||||| ||||||||||||   ||||||||||||||||   |||||| ||||||||||||||||||||   |||||||||||||||  ||| |||||    
T  3975 ttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtctagttcgcttaagcgaccggcttacagtgagtctgggttctgctcaattacggttc 3876  T
Q  391 gcttg 395  Q
    |||||    
T  3875 gcttg 3871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 244 - 395
Target Start/End: Original strand, 17492 - 17643
Alignment:
Q  244 aaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcac 342  Q
    |||| ||||||||||||||| | | || ||| ||||||||| ||||| |||| |||| ||||||| ||||||||||||||||||||||  | | | || |    
T  17492 aaaccttttagaatgctcaaaaggctcgcctagtgcacgaaacaaaa-ttcagaaagtggctgaccaaggctcacttcgcttaagcgaaggctggctcgc 17590  T
Q  343 ttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttg 395  Q
    ||||||||||||||||||||| || ||||||  ||||||| |  |||||||||    
T  17591 ttaagcgaccggcttacagaaagtttgggtttcgctcgctcacagttcgcttg 17643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 366
Target Start/End: Complemental strand, 24342 - 24178
Alignment:
Q  201 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 299  Q
    ||||||||| |||| |||| |||||||||||||||| |||| |||||| || | ||  ||||| | | |||||| ||||||||||||||  |||| ||||    
T  24342 agtaggatt-tgatgcctacacaagggttatacaagctaaaagaaacacttaaaaacactcaaaagggtcccctagtgcacgaagcaaag-ttcagaaag 24245  T
Q  300 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 366  Q
    || ||||||||||||||  ||||||||||||  ||||| || ||||||||||| ||| ||| |||||    
T  24244 agactgactaaggctcatctcgcttaagcgaaggatagctcgcttaagcgaccagctcacaaaaggt 24178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 387
Target Start/End: Original strand, 121200 - 121369
Alignment:
Q  218 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 316  Q
    ||||||| ||||||||||||| || ||||||||||| ||||||||| | | | |||| ||||||||||| |||| |||||||| ||||||||||| |       
T  121200 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacgaagc-aaaagtcaaaaagtggctgactaagacctt 121298  T
Q  317 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttaggg 387  Q
    ||||||||||||||  | | | || ||||||| |||||||||||||  ||  | |||||||||||| ||||    
T  121299 cttcgcttaagcgaaggctggctcgcttaagcaaccggcttacagagagttggtgttctgctcgctaaggg 121369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 387
Target Start/End: Original strand, 132077 - 132246
Alignment:
Q  218 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 316  Q
    ||||||| ||||||||||||| || ||||||||||| ||||||||| | | | |||| ||||||||||| |||| |||||||| ||||||||||| |       
T  132077 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacgaagc-aaaagtcaaaaagtggctgactaagacctt 132175  T
Q  317 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttaggg 387  Q
    ||||||||||||||  | | | || ||||||| |||||||||||||  ||  | |||||||||||| ||||    
T  132176 cttcgcttaagcgaaggctggctcgcttaagcaaccggcttacagagagttggtgttctgctcgctaaggg 132246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 325
Target Start/End: Complemental strand, 19166 - 19059
Alignment:
Q  218 tatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctca 316  Q
    ||||||| ||||||| ||||| || ||||||||||| ||||||||| | | |||||| ||||||||||| ||||||||||||| ||||||||||| | |     
T  19166 tatacaaaggttatataagttgaaagaaacattttaaaatgctcaaaaggatcccctagtgcacgaagc-aaaattcaaaaagtggctgactaagaccct 19068  T
Q  317 cttcgctta 325  Q
    |||||||||    
T  19067 cttcgctta 19059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 384
Target Start/End: Original strand, 72565 - 72747
Alignment:
Q  201 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 299  Q
    ||||||||| |||||| ||||||||||||||| ||| |||| | |||| ||||  || || || | | ||||||  ||||||||||||||||||| ||||    
T  72565 agtaggatt-tgatacttatacaagggttatataagctaaaaggaacactttaagatactaaaaagggtcccctaatgcacgaagcaaaaattcagaaag 72663  T
Q  300 aggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgctta 384  Q
     |||||||| |||||||  ||||||||||||  | ||| || ||||||||||| ||| ||| |||||  ||||| ||||||||||    
T  72664 tggctgact-aggctcagctcgcttaagcgaagggtagctcgcttaagcgaccagctcacaaaaggttggggttttgctcgctta 72747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 317 - 440
Target Start/End: Complemental strand, 41236 - 41113
Alignment:
Q  317 cttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgcttgagcgaacttctaacagaatca 416  Q
    |||||||||||||||   |||||| ||||||||| ||||| |||||||||  |||||| ||||||| |  ||||||||||||||||||| | ||||||      
T  41236 cttcgcttaagcgacgtctagttcgcttaagcgatcggctcacagaaggttggggttccgctcgctgacagttcgcttgagcgaacttcaagcagaatgt 41137  T
Q  417 aaacggtttttcgctcacaggttc 440  Q
    ||| ||||||| ||| || |||||    
T  41136 aaatggttttttgcttacgggttc 41113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 226 - 331
Target Start/End: Original strand, 51552 - 51657
Alignment:
Q  226 ggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgctt 324  Q
    ||||||||||||| || ||||||||||| ||||||||| | | | |||| |||||| |||| ||||||||||||| ||||||||||| |   ||||||||    
T  51552 ggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctagtgcacaaagc-aaaattcaaaaagtggctgactaagaccttcttcgctt 51650  T
Q  325 aagcgac 331  Q
    |||||||    
T  51651 aagcgac 51657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 201 - 352
Target Start/End: Complemental strand, 11782 - 11631
Alignment:
Q  201 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaa-tgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaa 298  Q
    ||||||||| |||| ||||||||||||||||||||| |||| |||| | || | || | ||||| | | |||||| ||||| ||||||||  |||| | |    
T  11782 agtaggatt-tgatgcctatacaagggttatacaagctaaaagaaaaacttaaaaaatactcaaaagggtcccctagtgcatgaagcaaag-ttcagata 11685  T
Q  299 gaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 352  Q
    ||||||||||||||||||  ||||||||||||  | |||||| |||||||||||    
T  11684 gaggctgactaaggctcagctcgcttaagcgaagggtagttcgcttaagcgacc 11631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 402
Target Start/End: Complemental strand, 3966 - 3831
Alignment:
Q  267 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgaccggcttacagaaggt 366  Q
    ||||||| |||||||||||||   |||||||| ||||||||||| ||||| |||||||||||||  | ||| || ||||||||||| ||| ||| || ||    
T  3966 gtcccctagtgcacgaagcaagg-ttcaaaaaaaggctgactaatgctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacaaaaagt 3868  T
Q  367 ctgggttct-gctcgcttagggttcgcttgagcgaac 402  Q
       ||| || ||||||| | |||||||||||||||||    
T  3867 tgaggtcctcgctcgctcacggttcgcttgagcgaac 3831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 10053 - 9950
Alignment:
Q  66 tccagaacatacacaattaattataattatgcacatacatcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattc 165  Q
    ||||||| ||||||||||||||||||| |  |  || |||||| |||||| || | | ||||| |||||||| |||||||||||||||||||  ||||||    
T  10053 tccagaaaatacacaattaattataatcaaactaatgcatcaagttcattaaacatagtatatgttcacttggtttcatactcaatcatctc-caaattc 9955  T
Q  166 actaa 170  Q
    |||||    
T  9954 actaa 9950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 330
Target Start/End: Complemental strand, 11324 - 11196
Alignment:
Q  201 agtaggattctgatacctatacaagggttatacaagttaaaggaaacattttagaatgctcaagaag-tcccctcgtgcacgaagcaaaaattcaaaaag 299  Q
    ||||||||| |||| |||||||||| |||||||||| ||||  ||||| || | | | ||||| | | |||||| |||||||||||||   |||| |||     
T  11324 agtaggatt-tgatgcctatacaagagttatacaagctaaaataaacacttaaaagtactcaaaagggtcccctagtgcacgaagcaagg-ttcagaaaa 11227  T
Q  300 aggctgactaaggctcacttcgcttaagcga 330  Q
    ||||||||||||||||| |||||||||||||    
T  11226 aggctgactaaggctcagttcgcttaagcga 11196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 18060 - 18121
Alignment:
Q  291 ttcaaaaagaggctgactaaggctcacttcgcttaagcgacagatagttcacttaagcgacc 352  Q
    |||| ||| ||||||||||||||||| ||||||||||||| || ||| || |||||||||||    
T  18060 ttcagaaaaaggctgactaaggctcagttcgcttaagcgaaaggtagctcgcttaagcgacc 18121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 6299 - 6343
Alignment:
Q  218 tatacaagggttatacaagttaaaggaaacattttagaatgctca 262  Q
    ||||||| ||||||||||||| || ||||||||||||||||||||    
T  6299 tatacaaaggttatacaagttgaaagaaacattttagaatgctca 6343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1427 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1427
Description:

Target: scaffold1427; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 1207 - 1273
Alignment:
Q  103 catcaatttcattcaataaattatatattcacttgatttcatactcaatcatctcaaaaattcactaa 170  Q
    |||||| ||||||||| | | ||||| |||||||| |||||||||||||||||||  |||||||||||    
T  1207 catcaagttcattcaacatagtatatgttcacttggtttcatactcaatcatctc-caaattcactaa 1273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 393
Target Start/End: Original strand, 134867 - 134924
Alignment:
Q  336 agttcacttaagcgaccggcttacagaaggtctgggttctgctcgcttagggttcgct 393  Q
    ||||| ||||||||||| |||||||| |||||||||||| | ||||||| || |||||    
T  134867 agttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgct 134924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 134820 - 134882
Alignment:
Q  267 gtcccctcgtgcacgaagcaaaaattcaaaaagaggctgactaaggctcacttcgcttaagcgac 331  Q
    ||||||| ||||||||||||| | |||| ||| ||||||||||| ||||| ||||||||||||||    
T  134820 gtcccctagtgcacgaagcaaga-ttcagaaa-aggctgactaacgctcagttcgcttaagcgac 134882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 434
Target Start/End: Complemental strand, 1391 - 1343
Alignment:
Q  386 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 434  Q
    |||||||||||||||||||   ||||||||||||  |||||||||||||    
T  1391 ggttcgcttgagcgaactttggacagaatcaaaattgtttttcgctcac 1343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 3372 - 3328
Alignment:
Q  218 tatacaagggttatacaagttaaaggaaacattttagaatgctca 262  Q
    ||||||| ||||||||||||| || ||||||||| ||||||||||    
T  3372 tatacaaaggttatacaagttgaaagaaacatttcagaatgctca 3328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 434
Target Start/End: Original strand, 49597 - 49645
Alignment:
Q  386 ggttcgcttgagcgaacttctaacagaatcaaaacggtttttcgctcac 434  Q
    |||||| ||||||||||||   |||||||||||| ||||||||||||||    
T  49597 ggttcgattgagcgaactttggacagaatcaaaatggtttttcgctcac 49645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University