View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2984_low_8 (Length: 417)
Name: NF2984_low_8
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2984_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 120 - 411
Target Start/End: Complemental strand, 2768203 - 2767908
Alignment:
| Q |
120 |
gtttcatgcaataccttattgctagatattaaaccagatattacatgttattctagaaaacaaagttggtttaaattagaaggttttgttattacaaaaa |
219 |
Q |
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| T |
2768203 |
gtttcatgcaataccttattgctagatattaaaccagatattacatgttattctagaaaacaaagttggtttaaattataaggttttgttattacaaaaa |
2768104 |
T |
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| Q |
220 |
tgttttggaaatatgcattaataatacacatatatacttgcaattttactaatccttttg----cgtgatgatagatatattcaatttgtatactttgat |
315 |
Q |
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| T |
2768103 |
tgttttggaaatatgcattaataatacacatatatacttgcaattgtactaatccttttgcgtacgtgatgatagatatattcaatttgtatactttgat |
2768004 |
T |
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| Q |
316 |
aactaactcgttgagctcatgtggttaaaaatgaactttggttaaatttgattaagctttggtactattcgagttcgattttctattagaataatc |
411 |
Q |
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| T |
2768003 |
aactaactcgttgagctcatgtggttaaaaatgaactttggttaaatttgattaagctttggtactattcgagttcaattttctattagaataatc |
2767908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 2768326 - 2768288
Alignment:
| Q |
19 |
atagtttaattctttcatgtttatcactattactacttc |
57 |
Q |
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| T |
2768326 |
atagtttaattctttcatgtttatcactattactacttc |
2768288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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