View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2984_low_9 (Length: 406)
Name: NF2984_low_9
Description: NF2984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2984_low_9 |
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| [»] scaffold0122 (1 HSPs) |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 393
Target Start/End: Complemental strand, 39438242 - 39437860
Alignment:
| Q |
14 |
gaaaagaaaaacctaaataaaatgattaaggagtccaatatctaccatttatgtcacattatatatgttggttgaatacctcattttaaagatataaaaa |
113 |
Q |
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| T |
39438242 |
gaaaagaaaaacctaaataaaatgattaaggagtccaatatctaccatttatgtcacattatatatgttggttgaatacctcattttaaagatataaaaa |
39438143 |
T |
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| Q |
114 |
atcaattgaataaataggaattaattcctttgtttttaaatctcaccaaatcaatttgaatgaaagtcaattaatgggaattaaatccctatttccgata |
213 |
Q |
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| T |
39438142 |
accaattgaataaataggaattaattcatttgtttttgaatctcaccaaatcaatttgaatgaaattcaattaatgggaattaaatcaccatttccgata |
39438043 |
T |
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| Q |
214 |
gcacaaattatgttgcatgcaaagtacttggagagttatcgagagtaagacacttgaatccgaattatctgatgtcggtatactttgtaaactac---at |
310 |
Q |
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| T |
39438042 |
gcacaaattatgttgcatgcaaagaacttggagaggtatcgagagtaagacatttgaatccgagttatctgttgtcggtatactttataaactacaatat |
39437943 |
T |
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| Q |
311 |
gattcttgatcttatgatgtggtagtagctttagatgttttctgagttgcctcgcaaagtgacatgtaatttgggacaaatgt |
393 |
Q |
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| T |
39437942 |
gattcttgatcttatgatgttgtagtagctttagatgttttctgagttgtctcgcaaagtgacatgtaatttggggcaaatgt |
39437860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 385
Target Start/End: Complemental strand, 29411 - 29043
Alignment:
| Q |
20 |
aaaaacctaaataaaatgattaaggagtccaatatctaccatttatgtcacattatatatgttggttgaatacctcattttaaagatataaaaaatcaat |
119 |
Q |
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| T |
29411 |
aaaaacctaaacaaaatgattaaggagttcaatatctaccatttatgtcacactatatatgttggttgaatacctcattttaatgatataaaaaatcaat |
29312 |
T |
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| Q |
120 |
tgaataaataggaattaattcctttgtttttaaatctcaccaaatcaatttgaatgaaagtcaattaatgggaattaaatccctatttccgatagcacaa |
219 |
Q |
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| T |
29311 |
taaataaatgggaattaattcctttgtttttgaatctcactaaatcaatttgaatgaaagtcaattaatgggaattaaatcactatttccaatagcacaa |
29212 |
T |
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| Q |
220 |
attatgttgcatgcaaagtacttggagagttatcgagagtaagacacttgaatccgaattatctgatgtcggtatactttgtaaact---acatgattct |
316 |
Q |
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| T |
29211 |
attatgttgcatgcaaagaacttggagagttatggagagtaagacatttgaattcgagttatttgttgtcggtatactttgtaaactaaaacatgatact |
29112 |
T |
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| Q |
317 |
tgatcttatgatgtggtagtagctttagatgttttctgagttgcctcgcaaagtgacatgtaatttggg |
385 |
Q |
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| T |
29111 |
tgatcgtatgatgttgtagtagttttagatgttttcttagttgcctcgcaaagtgacatataatttggg |
29043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 24 - 393
Target Start/End: Complemental strand, 4390 - 4020
Alignment:
| Q |
24 |
acctaaataaaatgattaaggagtccaatatctaccatttatgtcacattatatatgttggttgaatacctcattttaaagatataaaaaatcaattgaa |
123 |
Q |
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| T |
4390 |
acctaaacaaaatgattcaggagtccaatatctaccatttatgtcacactatatatattggttgaatacctcattttaaagatataaaaa-tcaattaaa |
4292 |
T |
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| Q |
124 |
taaataggaattaattcctttgtttttaaatctcaccaaatcaatttgaatgaaagtcaattaatgggaattaaatccctatttccgatagcacaaatta |
223 |
Q |
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| T |
4291 |
taaat-gaaattaattcctttgtttttgaatctcaccaaatcaatttgaatgaaagtcaattaatgggaattaaatcactatttccaatagcacaaatta |
4193 |
T |
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| Q |
224 |
tgttgcatgcaaagtacttggagagttatcgagagtaagacacttgaatccgaattatctgatgtcggtatactttgtaaactac---atgattcttgat |
320 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||||| |||||||||| |||| || ||| ||||||||||||||||||| || ||||||||| |
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| T |
4192 |
tgttgcatgcaaagaacttgaagagttatcgagagtaagacatttgaatccgagttatatgttgttggtatactttgtaaactacaatataattcttgat |
4093 |
T |
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| Q |
321 |
cttatgatgtggtagtagctttagatgttttctgagttgcctcgcaaagtgacatgtaatttgggacaaatgt |
393 |
Q |
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| T |
4092 |
cttatgattttgtagtagctttagatgttttctgagttgtctcgcaaagtgacatgtaatttggggcaaatgt |
4020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 14187007 - 14186780
Alignment:
| Q |
14 |
gaaaagaaaaacctaaataaaatgattaaggagtccaatatctaccatttatgtcacattatatatgttggttgaatacctcattttaaagatataaaaa |
113 |
Q |
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||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14187007 |
gaaaaaaaaaacctaaataaaattattaagaagtccaatatctaccatttatgtcacactatatatgttggttgaatacctcattttaaagatataaaaa |
14186908 |
T |
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| Q |
114 |
atcaattgaataaataggaattaattcctttgtttttaaatctcaccaaatcaatttgaatgaaagtcaattaatgggaattaaatccctatttccgata |
213 |
Q |
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| T |
14186907 |
atcaattgaataaatgggaattaattcctttgtttttgaatctcaccaaatcaatttgaatgaaagtcaattaatgggaattaaatcactatttccgata |
14186808 |
T |
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| Q |
214 |
gcacaaattatgttgcatgcaaagtact |
241 |
Q |
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| T |
14186807 |
gcacaaattatgttgcatgcaaagtact |
14186780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 286 - 380
Target Start/End: Complemental strand, 14186777 - 14186680
Alignment:
| Q |
286 |
tgtcggtatactttgtaaactaca---tgattcttgatcttatgatgtggtagtagctttagatgttttctgagttgcctcgcaaagtgacatgtaat |
380 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14186777 |
tgtcggtatactttgtaaactacaatatgattcttgatcttatgatgttgtagtagctttagatgttttttgagttgcctcgcaaagtgacatgtaat |
14186680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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