View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2985_high_4 (Length: 289)
Name: NF2985_high_4
Description: NF2985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2985_high_4 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 5047 - 5314
Alignment:
| Q |
18 |
acatatgagcacttaattaataagcgcttattctacaagagcttataaaatgggaaaataagcaaagaagaaactaagagatcaacgtattgcatgaaaa |
117 |
Q |
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| T |
5047 |
acatatgagcacttaaataataagcgcttatactacaagagcttataaaatgggaaaatgagcaaagaagaaactaagagatcaacgtattgtatgaaaa |
5146 |
T |
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| Q |
118 |
cataaagctctaaacagttnnnnnnnnnnnnnn--ggaaagctttaaacagtaggaactaaaccaaataaaataaatagtaactgaattggtttttccta |
215 |
Q |
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| T |
5147 |
cataaagctctaaacagttattaaaaaaaaaaaaaggaaagctttaaacagtaggaactaaaccaaataaagtaaatagtaactgaattggtttttccta |
5246 |
T |
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| Q |
216 |
tacactagaattgtgattagatgatatttcctttatgtaactaaatttgat--agtctttcctttgct |
281 |
Q |
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| T |
5247 |
tacactagaattgtgattagatgatatttcctttatgtaactgaatttgatagagtctttcctttgct |
5314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 12919 - 12963
Alignment:
| Q |
152 |
gaaagctttaaacagtaggaactaaaccaaataaaataaatagta |
196 |
Q |
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| T |
12919 |
gaaagctttaaacaatgggaacaaaaccaaataaagtaaatagta |
12963 |
T |
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