View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2985_high_5 (Length: 272)

Name: NF2985_high_5
Description: NF2985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2985_high_5
NF2985_high_5
[»] chr1 (15 HSPs)
chr1 (16-256)||(50589319-50589560)
chr1 (46-245)||(38544881-38545080)
chr1 (23-199)||(17033369-17033546)
chr1 (46-256)||(19598381-19598580)
chr1 (46-120)||(24658793-24658867)
chr1 (50-120)||(7857517-7857587)
chr1 (60-149)||(10785490-10785579)
chr1 (46-120)||(41920315-41920389)
chr1 (46-119)||(20113666-20113739)
chr1 (114-208)||(4651564-4651658)
chr1 (46-149)||(6583335-6583437)
chr1 (46-119)||(5389566-5389639)
chr1 (60-149)||(16147389-16147478)
chr1 (31-164)||(42373983-42374115)
chr1 (60-120)||(30686063-30686123)
[»] chr2 (21 HSPs)
chr2 (78-256)||(16959756-16959932)
chr2 (25-256)||(2062639-2062866)
chr2 (26-167)||(4471740-4471881)
chr2 (23-171)||(25505030-25505178)
chr2 (23-164)||(22885253-22885394)
chr2 (82-168)||(40704007-40704093)
chr2 (34-254)||(15126535-15126743)
chr2 (40-154)||(29486960-29487075)
chr2 (21-171)||(27739789-27739938)
chr2 (25-124)||(3745219-3745318)
chr2 (46-119)||(17105275-17105348)
chr2 (50-154)||(15722999-15723103)
chr2 (46-120)||(7874155-7874229)
chr2 (70-148)||(14106692-14106770)
chr2 (23-121)||(18680928-18681025)
chr2 (46-120)||(39339010-39339084)
chr2 (40-149)||(1269316-1269425)
chr2 (31-154)||(15710536-15710659)
chr2 (49-94)||(37770788-37770833)
chr2 (50-110)||(23650258-23650318)
chr2 (50-102)||(30967270-30967322)
[»] chr4 (13 HSPs)
chr4 (23-256)||(12295902-12296135)
chr4 (46-161)||(46698929-46699043)
chr4 (31-161)||(50102357-50102487)
chr4 (60-171)||(35800303-35800413)
chr4 (29-120)||(21988046-21988137)
chr4 (46-208)||(28966661-28966811)
chr4 (48-119)||(38929698-38929769)
chr4 (46-148)||(31050805-31050907)
chr4 (32-103)||(6600076-6600147)
chr4 (60-121)||(4305586-4305647)
chr4 (219-256)||(21988225-21988262)
chr4 (50-110)||(22811307-22811367)
chr4 (33-149)||(25753006-25753122)
[»] scaffold1613 (1 HSPs)
scaffold1613 (46-245)||(1160-1359)
[»] chr5 (11 HSPs)
chr5 (23-171)||(8730729-8730877)
chr5 (47-256)||(24072411-24072620)
chr5 (29-164)||(39184314-39184451)
chr5 (29-120)||(27712939-27713030)
chr5 (46-119)||(22675457-22675530)
chr5 (33-149)||(26046095-26046211)
chr5 (48-154)||(17854214-17854321)
chr5 (25-139)||(31721522-31721635)
chr5 (32-121)||(7392161-7392250)
chr5 (60-120)||(698223-698283)
chr5 (217-248)||(23426166-23426197)
[»] chr8 (11 HSPs)
chr8 (28-160)||(17720830-17720962)
chr8 (49-199)||(10552052-10552203)
chr8 (50-164)||(35062277-35062390)
chr8 (97-248)||(30236292-30236443)
chr8 (46-120)||(24995540-24995614)
chr8 (40-120)||(37986997-37987077)
chr8 (46-120)||(9519361-9519435)
chr8 (40-110)||(15906559-15906629)
chr8 (46-120)||(34389150-34389224)
chr8 (33-110)||(17657132-17657209)
chr8 (46-110)||(10248697-10248761)
[»] chr3 (11 HSPs)
chr3 (27-154)||(27398787-27398914)
chr3 (54-248)||(1653040-1653232)
chr3 (49-231)||(30935538-30935720)
chr3 (52-164)||(25594669-25594781)
chr3 (32-110)||(47945585-47945663)
chr3 (46-120)||(23328493-23328565)
chr3 (32-150)||(823565-823683)
chr3 (46-120)||(20611645-20611719)
chr3 (46-120)||(2392651-2392725)
chr3 (46-120)||(2394398-2394472)
chr3 (46-120)||(40023715-40023789)
[»] chr6 (7 HSPs)
chr6 (51-248)||(12793850-12794046)
chr6 (32-154)||(32935469-32935587)
chr6 (52-147)||(9223878-9223972)
chr6 (51-168)||(15943839-15943951)
chr6 (40-120)||(13098701-13098781)
chr6 (23-121)||(33968734-33968832)
chr6 (33-149)||(3880714-3880830)
[»] chr7 (16 HSPs)
chr7 (23-168)||(11379248-11379392)
chr7 (36-161)||(13311660-13311785)
chr7 (27-164)||(9106982-9107119)
chr7 (32-120)||(47457145-47457233)
chr7 (97-199)||(38485341-38485444)
chr7 (46-117)||(37794865-37794936)
chr7 (46-149)||(8744987-8745090)
chr7 (46-119)||(38306124-38306197)
chr7 (48-120)||(3866979-3867050)
chr7 (33-149)||(42533383-42533499)
chr7 (46-149)||(16954487-16954590)
chr7 (46-120)||(3419801-3419875)
chr7 (57-171)||(46133433-46133546)
chr7 (49-119)||(47326033-47326103)
chr7 (60-120)||(5860447-5860507)
chr7 (52-144)||(12480727-12480818)
[»] scaffold0062 (3 HSPs)
scaffold0062 (50-154)||(71556-71660)
scaffold0062 (50-154)||(46921-47024)
scaffold0062 (31-154)||(59448-59571)
[»] scaffold0200 (1 HSPs)
scaffold0200 (40-149)||(19216-19325)
[»] scaffold0119 (1 HSPs)
scaffold0119 (40-149)||(42277-42386)
[»] scaffold0068 (1 HSPs)
scaffold0068 (60-120)||(35931-35991)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 50589319 - 50589560
Alignment:
Q  16 cagagaaaccgtagccagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgt 115  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  50589319 cagagaaaccgtagccagccaaacaagaaagcagctagacgccaagtcccgatctcgaagcaaaattaaccggcccaccagaatccagcacacaatatgt 50589418  T
Q  116 aagacatacaacatgatttgcggtggtgcaaacatcaataaaaaaggaacaaaagc-aagctagaatgacacacaccctcaaaaccaccataaatacatt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  50589419 aagacatacaacatgatttgcggtggtgcaaacatcaataaaaaaggaacaaaagctaagctagaatgacacacaccctcaaaaccaccataaacacatt 50589518  T
Q  215 cacaacccaaaactcaagcaagaggtagcgacaaggaatatg 256  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  50589519 cacaacccaaaactcaagcaagaggcagcgacaaggaatatg 50589560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 38544881 - 38545080
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgca 145  Q
    |||||||||| ||||||||| || ||||||||||| ||| || ||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  38544881 gcagctagacaccaactcccaatctcgaagcaaaagtaatcggcccactagaatccagcacacaatatgtaagacaaacgacatgatttgcggtggtgca 38544980  T
Q  146 aacatcaataaaaaaggaacaaaagc-aagctagaatgacacacaccctcaaaaccaccataaatacattcacaacccaaaactcaagcaagaggtagcg 244  Q
    ||||||||| ||||||||| ||| ||  |||| ||| ||||||||||||| ||| |||| |||| |  || || ||||||||||||| |||||| |||||    
T  38544981 aacatcaatcaaaaaggaaaaaatgctcagctcgaaggacacacaccctc-aaagcaccctaaacatcttaacgacccaaaactcaaacaagagctagcg 38545079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 17033546 - 17033369
Alignment:
Q  23 accgtagccagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacat 122  Q
    ||||||| |||||||| ||||  ||| ||||||||||| || |||| ||||| ||||| |||||| |||||||||||||||||||||||| ||||||||     
T  17033546 accgtagtcagccaaacaagattgcaactagacgccaattctcgatctcgaaacaaaagtaaccggcccaccagaatccagcacacaataagtaagacaa 17033447  T
Q  123 acaacatgatttgcggtggtgcaaacatcaataaaaaaggaacaaaagc-aagctagaatgacacacaccctcaaaac 199  Q
    || ||| |||||| |||||||||||||||||| ||||||||| ||| ||  |||| ||| |||| |||||||||||||    
T  17033446 acgacaagatttgtggtggtgcaaacatcaatcaaaaaggaaaaaatgctcagctcgaaggacatacaccctcaaaac 17033369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 256
Target Start/End: Complemental strand, 19598580 - 19598381
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgca 145  Q
    ||||||||||||||||| | ||| ||||||||||| |||||| ||||||||| |||||||||||| | |||||||             ||||||||||||    
T  19598580 gcagctagacgccaacttctgatctcgaagcaaaagtaaccggcccaccagagtccagcacacaaaaagtaagac-------------tgcggtggtgca 19598494  T
Q  146 aacatcaat-aaaaaaggaacaaaagc-aagctagaatgacacacaccctcaaaaccaccataaatacattcacaacccaaaactcaagcaagaggtagc 243  Q
    ||||||||| |||||||||| ||| ||  |||| ||| ||||  |||||| |||| |||| |||| || ||  | ||||||||||||| | ||| |||||    
T  19598493 aacatcaataaaaaaaggaataaatgctcagctcgaaggacatgcacccttaaaaacaccctaaacaccttagccacccaaaactcaaactagatgtagc 19598394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 24658867 - 24658793
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    |||||||||| |||||||||||| | ||||||||| |||||| |||||| || |||||||||||| |||||||||    
T  24658867 gcagctagacaccaactcccgatcttgaagcaaaaataaccggcccaccggactccagcacacaaaatgtaagac 24658793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 7857587 - 7857517
Alignment:
Q  50 ctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    |||||| |||||||||||| ||||||||||| ||| || |||||  ||| |||||||||||||||||||||    
T  7857587 ctagacaccaactcccgatctcgaagcaaaaataatcggcccactggaaaccagcacacaatatgtaagac 7857517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 10785490 - 10785579
Alignment:
Q  60 actcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaaca 149  Q
    ||||||||| |||||||||||||||||| |||||| ||| |||||||||||   |||||||| || ||| |||  |||| ||||||||||    
T  10785490 actcccgatctcgaagcaaaattaaccggcccaccggaaaccagcacacaaacagtaagacaaaccacaagataggcgggggtgcaaaca 10785579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 41920389 - 41920315
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    |||||||||| || ||||||||| ||||||| |||| ||||| ||||||  || | |||||||||||||||||||    
T  41920389 gcagctagaccccgactcccgatctcgaagccaaatgaaccggcccaccgaaaactagcacacaatatgtaagac 41920315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 20113666 - 20113739
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaaga 119  Q
    |||||||||| || ||||||||| ||||||| |||| ||||| ||||||  || | ||||||||||||||||||    
T  20113666 gcagctagaccccgactcccgatctcgaagccaaatgaaccggcccaccgaaaactagcacacaatatgtaaga 20113739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 208
Target Start/End: Complemental strand, 4651658 - 4651564
Alignment:
Q  114 gtaagacatacaacatgatttgcggtggtgcaaacatcaataaaaaaggaacaaaagc-aagctagaatgacacacaccctcaaaaccaccataaa 208  Q
    |||||||| || || ||| ||||||||| ||||||||||||  |||||||| |||| |  |||| ||| ||||||||||||||||| |||||||||    
T  4651658 gtaagacagacgacgtgacttgcggtggagcaaacatcaatcgaaaaggaaaaaaatctcagctcgaaggacacacaccctcaaaa-caccataaa 4651564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 6583335 - 6583437
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgca 145  Q
    |||||||||| || ||||||||| ||||||||||| |||||| ||||||   | ||| ||||||| | ||| |||| || || |||| ||||||||||||    
T  6583335 gcagctagacaccgactcccgatctcgaagcaaaagtaaccggcccaccgacaaccaacacacaaaaagtatgaca-acgacgtgatatgcggtggtgca 6583433  T
Q  146 aaca 149  Q
    ||||    
T  6583434 aaca 6583437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 5389566 - 5389639
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaaga 119  Q
    |||||||||| |  ||||||||| ||||||| |||| ||||| |||||   || ||||||||||||||||||||    
T  5389566 gcagctagacccggactcccgatctcgaagccaaatgaaccggcccactgaaaaccagcacacaatatgtaaga 5389639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 16147478 - 16147389
Alignment:
Q  60 actcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaaca 149  Q
    ||||||||| |||||  |||| ||| || |||||| ||| | | ||||||||| |||||||| |  ||||||| ||||||||||||||||    
T  16147478 actcccgatctcgaactaaaagtaatcggcccaccggaacctaacacacaataagtaagacaaatgacatgatatgcggtggtgcaaaca 16147389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 42374115 - 42373983
Alignment:
Q  31 cagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatg 130  Q
    |||||||| ||||  ||| |||||| |  ||||||||| ||||| ||||| ||||||  |||||||||| || ||||||||| ||| ||||  | |||||    
T  42374115 cagccaaacaagattgcaactagacactgactcccgatctcgaatcaaaagtaaccggtccaccagaatacaacacacaataagta-gacaggcgacatg 42374017  T
Q  131 atttgcggtggtgcaaacatcaataaaaaaggaa 164  Q
     |  ||| || ||||||||||||| |||||||||    
T  42374016 ttaagcgatgatgcaaacatcaatcaaaaaggaa 42373983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 30686063 - 30686123
Alignment:
Q  60 actcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    ||||||||| ||||||| |||| ||||| ||||||  || ||| |||||||||||||||||    
T  30686063 actcccgatctcgaagccaaatgaaccggcccaccgaaaaccaacacacaatatgtaagac 30686123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 78 - 256
Target Start/End: Complemental strand, 16959932 - 16959756
Alignment:
Q  78 aaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaacatcaataaaaaaggaacaaaagc-aagct 176  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||  ||||    
T  16959932 aaattaaccggcccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaatatcaatcaaaaaggaacaaaagctcagct 16959833  T
Q  177 agaatgacacacaccctcaaaaccaccataaatacattcacaacccaaaactcaagcaagaggtagcgacaaggaatatg 256  Q
    ||||||||||||||| || |||||||| |||| || ||  |||||||||||| || ||||||||||||||||||||||||    
T  16959832 agaatgacacacaccttcgaaaccaccctaaacacttt--caacccaaaacttaa-caagaggtagcgacaaggaatatg 16959756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 256
Target Start/End: Complemental strand, 2062866 - 2062639
Alignment:
Q  25 cgtagccagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatac 124  Q
    |||||||||||||| ||||| |||||||||| |||||||||||| ||||||||||| |||  | |||||||| |||||||||||| |||||     ||||    
T  2062866 cgtagccagccaaacaagaatgcagctagacaccaactcccgatctcgaagcaaaagtaattggcccaccagcatccagcacacactatgt-----atac 2062772  T
Q  125 aacatgatttgcggtggtgcaaacatcaataaaaaaggaacaaaagc-aagctagaatgacacacaccctcaaaaccaccataaatacattcacaaccca 223  Q
     ||||||||||||||  ||||||||||||| ||||||||||||| ||  | || ||| ||||| ||||||| ||||||||||||| || |   |||||||    
T  2062771 gacatgatttgcggtaatgcaaacatcaatcaaaaaggaacaaatgctcaactcgaaggacacgcaccctctaaaccaccataaacacctaagcaaccca 2062672  T
Q  224 aaactcaagcaagaggtagcgacaaggaatatg 256  Q
    |||||||| | ||||||||| |||| |||||||    
T  2062671 aaactcaaacgagaggtagcaacaatgaatatg 2062639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 167
Target Start/End: Complemental strand, 4471881 - 4471740
Alignment:
Q  26 gtagccagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacataca 125  Q
    |||| |||||||| || |||| || |||||||||||||||||| | ||||||||| |||||| |||||||||||||| ||||||||| |||||||  ||     
T  4471881 gtagtcagccaaacaataaagtagatagacgccaactcccgatcttgaagcaaaagtaaccggcccaccagaatccatcacacaataagtaagactgacg 4471782  T
Q  126 acatgatttgcggtggtgcaaacatcaataaaaaaggaacaa 167  Q
    |||  |||||||||||||||||||||||| ||||||||||||    
T  4471781 acaaaatttgcggtggtgcaaacatcaatcaaaaaggaacaa 4471740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 25505030 - 25505178
Alignment:
Q  23 accgtagccagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacat 122  Q
    |||||||||||| |||| ||| || |||||||| |||||| | ||| ||||||||||| ||| || |||||||||||||||||||||||| ||||||||     
T  25505030 accgtagccagcaaaatcagatagtagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagcacacaataagtaagacag 25505129  T
Q  123 acaacatgatttgcggtggtgcaaacatcaataaaaaaggaacaaaagc 171  Q
    |||||  ||||| |||||| |||||||||||| ||||||||| ||||||    
T  25505130 acaaccagatttacggtggggcaaacatcaatcaaaaaggaaaaaaagc 25505178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 164
Target Start/End: Original strand, 22885253 - 22885394
Alignment:
Q  23 accgtagccagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacat 122  Q
    ||||||||| |||||| ||| |||||||||||| |||||||||||| ||||||||||| |||||| |||||||| ||||| ||||||| ||||||  ||     
T  22885253 accgtagcccgccaaacaaggaagcagctagacaccaactcccgatctcgaagcaaaagtaaccggcccaccagcatccaacacacaaaatgtaaagcag 22885352  T
Q  123 acaacatgatttgcggtggtgcaaacatcaataaaaaaggaa 164  Q
    |  |||||| ||||| |||||||||||||||| |||||||||    
T  22885353 aagacatgaattgcgatggtgcaaacatcaatcaaaaaggaa 22885394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 40704093 - 40704007
Alignment:
Q  82 taaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaacatcaataaaaaaggaacaaa 168  Q
    |||||| |||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||| |||||||||||||||||||    
T  40704093 taaccggcccaccagaatccagcacacaatatgtatgacaaacgacatgatttgcggtggtgcaaacctcaataaaaaaggaacaaa 40704007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 254
Target Start/End: Original strand, 15126535 - 15126743
Alignment:
Q  34 ccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatt 133  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||| ||||||||| | ||||||             |    
T  15126535 ccaaacaagaatgcagctagacgccaactcccgatctcgaagcaaaagtaactgacccaccagaatctagcacacaaaaagtaaga-------------t 15126621  T
Q  134 tgcggtggtgcaaacatcaataaaaaaggaacaaaagc-aagctagaatgacacacaccctcaaaaccaccataaatacattcacaacccaaaactcaag 232  Q
    ||||||||||||||| ||||||||||||||||||| ||  || |  || ||||| |||||||||||||||| |||| || |   | | |||||||||||     
T  15126622 tgcggtggtgcaaacgtcaataaaaaaggaacaaatgctcagttcaaaggacacgcaccctcaaaaccaccctaaacacttgagccatccaaaactcaaa 15126721  T
Q  233 caagaggtagcgacaaggaata 254  Q
    |||||||||||||||| |||||    
T  15126722 caagaggtagcgacaacgaata 15126743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 29487075 - 29486960
Alignment:
Q  40 aagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccac-cagaatccagcacacaatatgtaagacatacaacatgatttgcgg 138  Q
    |||||||||||||||| |||||||||||| ||||||||||| |||||| |||   ||||||||||||||||| | |||| ||| ||||||||| ||||||    
T  29487075 aagaaagcagctagacaccaactcccgatctcgaagcaaaagtaaccggccccgtcagaatccagcacacaacaagtaaaacagacaacatgaattgcgg 29486976  T
Q  139 tggtgcaaacatcaat 154  Q
    ||||||||||||||||    
T  29486975 tggtgcaaacatcaat 29486960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 27739938 - 27739789
Alignment:
Q  21 aaaccgtagccagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    ||||||||| | |||||| | |||||||||||||| | |||||||||| ||||||| ||||||| || ||| ||||||||||||| |||||||| || |     
T  27739938 aaaccgtagtccgccaaacatgaaagcagctagacactaactcccgatctcgaagcgaaattaatcggcccgccagaatccagcatacaatatg-aaaat 27739840  T
Q  121 atacaacatgatttgcggtggtgcaaacatcaataaaaaaggaacaaaagc 171  Q
    | ||||||||| || | ||||||||||||||||| ||||||||| ||||||    
T  27739839 agacaacatgaattacagtggtgcaaacatcaatcaaaaaggaaaaaaagc 27739789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 3745318 - 3745219
Alignment:
Q  25 cgtagccagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatac 124  Q
    ||||||| ||||||  |||  ||||||||||||||||||||||| || ||| |||| |||||| |||||||||||||||||||||||| ||| |||||||    
T  3745318 cgtagcctgccaaacgagactgcagctagacgccaactcccgatctcaaagtaaaagtaaccggcccaccagaatccagcacacaataagtacgacatac 3745219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 17105348 - 17105275
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaaga 119  Q
    ||||||||||||| |||||  || || |||||||| ||||||||||||| ||| ||||||||||||||||||||    
T  17105348 gcagctagacgccgactccttatctccaagcaaaagtaaccgacccaccggaaaccagcacacaatatgtaaga 17105275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 15723103 - 15722999
Alignment:
Q  50 ctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaaca 149  Q
    |||||| ||||||||| || ||||| ||||| ||||||  |||||||||||||||| ||||| |||||||||    |||||||||||  |||| ||||||    
T  15723103 ctagacaccaactccctatctcgaaccaaaagtaaccggtccaccagaatccagcagacaatttgtaagacaatagacatgatttgcaatggtacaaaca 15723004  T
Q  150 tcaat 154  Q
    |||||    
T  15723003 tcaat 15722999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 7874229 - 7874155
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    |||||||||| |||||||||||| |||||||||||  ||||| |||||| ||  |||||||||||||| ||||||    
T  7874229 gcagctagacaccaactcccgatctcgaagcaaaaaaaaccggcccaccggacaccagcacacaatatttaagac 7874155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 14106692 - 14106770
Alignment:
Q  70 tcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaac 148  Q
    ||||||||||| |||||| |||||| ||| ||| ||||||||| | |||||| || |||||||  ||||||||||||||    
T  14106692 tcgaagcaaaagtaaccggcccaccggaaaccaacacacaataagcaagacagacgacatgataagcggtggtgcaaac 14106770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 18681025 - 18680928
Alignment:
Q  23 accgtagccagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagaca 121  Q
    ||||||| || ||||| || || || |||||||||||||||||||| ||||||| ||||  |  |||||| ||||||||| ||||||||| ||||||||    
T  18681025 accgtagtcaaccaaacaataacgccgctagacgccaactcccgatctcgaagc-aaatggattgacccatcagaatccaacacacaataagtaagaca 18680928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 39339010 - 39339084
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    |||||||||| || ||||||||| ||||||| |||| ||| | ||||||  || |||||||||||||||||||||    
T  39339010 gcagctagaccccgactcccgatctcgaagccaaatgaactggcccaccgaaaaccagcacacaatatgtaagac 39339084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 1269425 - 1269316
Alignment:
Q  40 aagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggt 139  Q
    ||||| ||||||||||  | ||||||||| ||||||||||||||||||||||| | | | |||||| ||||   |||||||| || |||||||    |||    
T  1269425 aagaatgcagctagacatcgactcccgatctcgaagcaaaattaaccgacccatcgggaaccagcatacaaacagtaagacaaacgacatgatagatggt 1269326  T
Q  140 ggtgcaaaca 149  Q
    ||||||||||    
T  1269325 ggtgcaaaca 1269316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 15710659 - 15710536
Alignment:
Q  31 cagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatg 130  Q
    |||||||| ||||  ||| ||| || |||||||||||| || |||||||| |||  | |||||||||||| |||| ||||| |||||||||    |||||    
T  15710659 cagccaaacaagattgcaactaaacaccaactcccgatctcaaagcaaaagtaattggcccaccagaatctagcagacaatttgtaagacaatagacatg 15710560  T
Q  131 atttgcggtggtgcaaacatcaat 154  Q
    |||| |  |||| |||||||||||    
T  15710559 attttcaatggtacaaacatcaat 15710536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 37770788 - 37770833
Alignment:
Q  49 gctagacgccaactcccgatttcgaagcaaaattaaccgacccacc 94  Q
    ||||||| |||||||||||| ||||||||||| |||||| ||||||    
T  37770788 gctagacaccaactcccgatctcgaagcaaaagtaaccggcccacc 37770833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 23650318 - 23650258
Alignment:
Q  50 ctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaa 110  Q
    |||||| |||||||||| | |||||||  | ||||||| ||||||||||||||| ||||||    
T  23650318 ctagacaccaactcccggtctcgaagcctagttaaccggcccaccagaatccaggacacaa 23650258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 30967270 - 30967322
Alignment:
Q  50 ctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatcca 102  Q
    |||||| ||||||| |||||| |||||||||  ||||| ||||||||||||||    
T  30967270 ctagacaccaactctcgattttgaagcaaaagcaaccggcccaccagaatcca 30967322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 23 - 256
Target Start/End: Complemental strand, 12296135 - 12295902
Alignment:
Q  23 accgtagccagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacat 122  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| || |||||||||||||||||||||||||||||||||     
T  12296135 accgtagctagccaaataagaatgcagctagacgccaactcccgatctcgaagcaaaagtaatcggcccaccagaatccagcacacaatatgtaagacag 12296036  T
Q  123 acaacatgatttgcggtggtgcaaacatcaataaaaaaggaacaaaagc-aagctagaatgacacacaccctcaaaaccaccataaatacattcacaacc 221  Q
    || ||   ||||||||||||||||||||| || ||||||||| ||| ||  |||| ||| |||||  |||||||||| |||| |||| |  ||  || ||    
T  12296035 acgactaaatttgcggtggtgcaaacatcgatcaaaaaggaaaaaatgctcagctcgaaggacacgtaccctcaaaa-caccttaaacaacttagcagcc 12295937  T
Q  222 caaaactcaagcaagaggtagcgacaaggaatatg 256  Q
    |||||||||| |||||||||||||||| |||||||    
T  12295936 caaaactcaaacaagaggtagcgacaacgaatatg 12295902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 46698929 - 46699043
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgca 145  Q
    |||||||||| |||||||||||| ||||||||||| ||| || ||||| ||||||||||||||||||||||||||| |  |||  |||||| ||||||||    
T  46698929 gcagctagacaccaactcccgatctcgaagcaaaagtaatcggcccac-agaatccagcacacaatatgtaagacagaatacaaaatttgcagtggtgca 46699027  T
Q  146 aacatcaataaaaaag 161  Q
    ||||||||| ||||||    
T  46699028 aacatcaatcaaaaag 46699043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 31 - 161
Target Start/End: Complemental strand, 50102487 - 50102357
Alignment:
Q  31 cagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatg 130  Q
    |||||||| ||||| ||| ||||||||||||| || || ||||||||||| ||| ||    |||||||||||||||||||||||||||||| || |||      
T  50102487 cagccaaacaagaatgcaactagacgccaacttccaatctcgaagcaaaagtaatcggttgaccagaatccagcacacaatatgtaagacagacgacaaa 50102388  T
Q  131 atttgcggtggtgcaaacatcaataaaaaag 161  Q
    |||| ||||||||||||||||||| ||||||    
T  50102387 atttacggtggtgcaaacatcaatcaaaaag 50102357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 60 - 171
Target Start/End: Complemental strand, 35800413 - 35800303
Alignment:
Q  60 actcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaacatcaataaaaa 159  Q
    |||||| || |||||||||||| |||||||||| ||||||||| ||||||||| |||||||| || |||||||||||||||| |||| ||||| | ||||    
T  35800413 actcccaatctcgaagcaaaat-aaccgacccatcagaatccaacacacaataagtaagacagacgacatgatttgcggtggagcaatcatcactcaaaa 35800315  T
Q  160 aggaacaaaagc 171  Q
    ||| | ||||||    
T  35800314 agggaaaaaagc 35800303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 21988046 - 21988137
Alignment:
Q  29 gccagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    |||||||||| ||||| |||||||||| |||||||| ||| ||||| ||||| |||||| ||||||||||| |||||||||| | |||||||    
T  21988046 gccagccaaacaagaatgcagctagacaccaactcctgatctcgaaacaaaagtaaccggcccaccagaattcagcacacaaaaagtaagac 21988137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 208
Target Start/End: Complemental strand, 28966811 - 28966661
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgca 145  Q
    ||||||||||||||||| ||||| ||||||| ||| |||||| |||||||||||||||||||| | | |||||||             ||||||||||||    
T  28966811 gcagctagacgccaacttccgatctcgaagccaaagtaaccggcccaccagaatccagcacactaaaagtaagac-------------tgcggtggtgca 28966725  T
Q  146 aacatcaataaaaaaggaacaaaagc-aagctagaatgacacacaccctcaaaaccaccataaa 208  Q
    ||||||||| ||||||||||||| ||   ||| ||| ||||||||||||||||| |||| ||||    
T  28966724 aacatcaatcaaaaaggaacaaatgctcggctcgaaggacacacaccctcaaaaacaccctaaa 28966661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 38929769 - 38929698
Alignment:
Q  48 agctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaaga 119  Q
    ||||| ||||||||| ||||| ||||||||||| |||||| |||||||||||||||||||||| | ||||||    
T  38929769 agctaaacgccaacttccgatctcgaagcaaaagtaaccggcccaccagaatccagcacacaaaaagtaaga 38929698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 31050805 - 31050907
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgca 145  Q
    |||||||| | || ||||||| | ||||||||||| |||||| |||||| ||| ||| |||| |||| | |||||| || |||||||  |||||||||||    
T  31050805 gcagctagtcaccgactcccggtctcgaagcaaaagtaaccggcccaccggaaaccaacacataataagcaagacagacgacatgataagcggtggtgca 31050904  T
Q  146 aac 148  Q
    |||    
T  31050905 aac 31050907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 6600076 - 6600147
Alignment:
Q  32 agccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccag 103  Q
    ||||||| ||||  ||| |||||| |||||||||||| || ||||||||||||||| || | ||||||||||    
T  6600076 agccaaacaagattgcaactagacaccaactcccgatctcaaagcaaaattaaccggcctatcagaatccag 6600147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 4305647 - 4305586
Alignment:
Q  60 actcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagaca 121  Q
    ||||||||| ||||||| |||| ||||| ||||||  || |||| |||||||||||||||||    
T  4305647 actcccgatctcgaagccaaatgaaccggcccaccgaaaaccagtacacaatatgtaagaca 4305586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 21988225 - 21988262
Alignment:
Q  219 acccaaaactcaagcaagaggtagcgacaaggaatatg 256  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  21988225 acccaaaactcaaacaagaggtagcgacaacgaatatg 21988262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 22811307 - 22811367
Alignment:
Q  50 ctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaa 110  Q
    |||||| |||| | ||||| ||||||||||| |||||||||||||  || |||||||||||    
T  22811307 ctagacaccaagttccgatctcgaagcaaaagtaaccgacccaccgaaaaccagcacacaa 22811367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 149
Target Start/End: Complemental strand, 25753122 - 25753006
Alignment:
Q  33 gccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgat 132  Q
    |||||| ||||  |||||||||| || ||||||||| ||||||||||||||| |  |||| | ||| |||||| |||| | ||||| || || |||| ||    
T  25753122 gccaaacaagattgcagctagacaccgactcccgatctcgaagcaaaattaagctgcccatcggaaaccagcaaacaaaaagtaaggcaaacgacataat 25753023  T
Q  133 ttgcggtggtgcaaaca 149  Q
     || ||| |||||||||    
T  25753022 atgtggttgtgcaaaca 25753006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 1160 - 1359
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgca 145  Q
    |||||||||| ||||||||| || ||||||||||| ||| || ||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  1160 gcagctagacaccaactcccaatctcgaagcaaaagtaatcggcccactagaatccagcacacaatatgtaagacaaacgacatgatttgcggtggtgca 1259  T
Q  146 aacatcaataaaaaaggaacaaaagc-aagctagaatgacacacaccctcaaaaccaccataaatacattcacaacccaaaactcaagcaagaggtagcg 244  Q
    ||||||||| ||||||||| ||| ||  |||| ||| ||||||||||||| ||| |||| |||| |  || || ||||||||||||| |||||| |||||    
T  1260 aacatcaatcaaaaaggaaaaaatgctcagctcgaaggacacacaccctc-aaagcaccctaaacatcttaacgacccaaaactcaaacaagagctagcg 1358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 171
Target Start/End: Complemental strand, 8730877 - 8730729
Alignment:
Q  23 accgtagccagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacat 122  Q
    |||||||||||| |||| ||| || |||||||| |||||| | ||| ||||||||||| ||| || |||||||||||||||||||||||| ||||||||     
T  8730877 accgtagccagcaaaatcagatagtagctagacaccaacttctgatctcgaagcaaaagtaatcggcccaccagaatccagcacacaataagtaagacag 8730778  T
Q  123 acaacatgatttgcggtggtgcaaacatcaataaaaaaggaacaaaagc 171  Q
    |||||  ||||| |||||| |||||||||||| ||||||||| ||||||    
T  8730777 acaaccagatttacggtggggcaaacatcaatcaaaaaggaaaaaaagc 8730729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 47 - 256
Target Start/End: Original strand, 24072411 - 24072620
Alignment:
Q  47 cagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaa 146  Q
    |||||| ||||||||||||||| | ||||||||| |||||| ||||| |||||||||||||||| |||||||||| || ||||||||| ||||| |  ||    
T  24072411 cagctaaacgccaactcccgatcttgaagcaaaagtaaccggcccactagaatccagcacacaacatgtaagacagacgacatgatttacggtgataaaa 24072510  T
Q  147 acatcaataaaaaaggaacaaaagc-aagctagaatgacacacaccctcaaaaccaccataaatacattcacaacccaaaactcaagcaagaggtagcga 245  Q
    |||||||| ||| ||||| ||| ||  | || ||| ||||| ||||||  ||| |||| |||| || || ||||||||||||| || |||||| ||||||    
T  24072511 acatcaatcaaataggaaaaaatgctcaactcgaaggacacgcaccct-taaagcaccctaaacaccttaacaacccaaaacttaaacaagagctagcga 24072609  T
Q  246 caaggaatatg 256  Q
    ||| |||||||    
T  24072610 caacgaatatg 24072620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 164
Target Start/End: Original strand, 39184314 - 39184451
Alignment:
Q  29 gccagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatac-aac 127  Q
    |||| ||||| ||||  ||| ||||||||||||||||||| ||||| ||||| |||||  ||||||||||||||||||||||||  ||||||| || | |    
T  39184314 gccaaccaaacaagattgcaactagacgccaactcccgatctcgaatcaaaagtaacctgcccaccagaatccagcacacaataaataagacagacgacc 39184413  T
Q  128 atgatttgcggtggtgc-aaacatcaataaaaaaggaa 164  Q
    ||| ||||||||||||| |||||||||| |||||||||    
T  39184414 atgctttgcggtggtgcaaaacatcaatcaaaaaggaa 39184451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 27713030 - 27712939
Alignment:
Q  29 gccagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    |||| ||||| ||||| ||| ||||||||||||||||||  ||||||||||| |||||| |||| ||||||||||||||||| | |||||||    
T  27713030 gccaaccaaacaagaatgcatctagacgccaactcccgacctcgaagcaaaagtaaccggcccatcagaatccagcacacaaaaagtaagac 27712939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 22675457 - 22675530
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaaga 119  Q
    ||||||||||||||||||||| | ||||||||||| |||||| |||||||||||||| ||||||| | ||||||    
T  22675457 gcagctagacgccaactcccggtctcgaagcaaaagtaaccggcccaccagaatccaacacacaaaaagtaaga 22675530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 26046095 - 26046211
Alignment:
Q  33 gccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgat 132  Q
    |||||||||||  |||||||| | || ||||||| | ||||||||||||||| |  |||||||||| | ||||||||| | ||| |||| || |||||||    
T  26046095 gccaaataagattgcagctagccaccgactcccggtctcgaagcaaaattaatctgcccaccagaaactagcacacaaaaagtatgacaaacgacatgat 26046194  T
Q  133 ttgcggtggtgcaaaca 149  Q
     ||||||||||||||||    
T  26046195 atgcggtggtgcaaaca 26046211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 17854214 - 17854321
Alignment:
Q  48 agctagacgccaactcccgatttcgaagcaaaat-taaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaa 146  Q
    |||||||  |||||||||||| || ||||||||  |||  | ||||||||||||||||||||||| |||||||||  | |||||| |||| |||| ||||    
T  17854214 agctagagaccaactcccgatctcaaagcaaaaagtaaatggcccaccagaatccagcacacaatttgtaagacaatcgacatgagttgcagtggcgcaa 17854313  T
Q  147 acatcaat 154  Q
    ||||||||    
T  17854314 acatcaat 17854321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 31721635 - 31721522
Alignment:
Q  25 cgtagccagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatac 124  Q
    |||||||| ||||| || || || |||||| |||||||||||||  |||||||||| | |||| |||| |||||||||  |||||||| |||||||| ||    
T  31721635 cgtagccaaccaaacaataatgccgctagaagccaactcccgatcgcgaagcaaaa-tgaccggcccatcagaatccataacacaataagtaagacagac 31721537  T
Q  125 aacatgatttgcggt 139  Q
     || ||| |||||||    
T  31721536 gacgtgacttgcggt 31721522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 7392161 - 7392250
Alignment:
Q  32 agccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagaca 121  Q
    ||||||| ||||  |||||||||| |||||||||||| ||||||||||| ||||||  ||| ||||  ||| ||||||| | ||||||||    
T  7392161 agccaaacaagattgcagctagacaccaactcccgatctcgaagcaaaagtaaccggtccatcagataccaacacacaaaaagtaagaca 7392250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 698283 - 698223
Alignment:
Q  60 actcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    ||||||||| ||||||| |||| ||||| ||||| | || |||||||||||||||||||||    
T  698283 actcccgatctcgaagccaaatgaaccggcccactaaaaaccagcacacaatatgtaagac 698223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 248
Target Start/End: Complemental strand, 23426197 - 23426166
Alignment:
Q  217 caacccaaaactcaagcaagaggtagcgacaa 248  Q
    ||||||||||||||||||||||||||||||||    
T  23426197 caacccaaaactcaagcaagaggtagcgacaa 23426166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 28 - 160
Target Start/End: Original strand, 17720830 - 17720962
Alignment:
Q  28 agccagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaac 127  Q
    ||||||||||| ||||| ||||||| |||||||||| |||| || |||||||| ||| || |||||||||||||||||||||| |||||||| | || ||    
T  17720830 agccagccaaacaagaatgcagctatacgccaactctcgatctcaaagcaaaagtaatcggcccaccagaatccagcacacaaaatgtaagaaagacgac 17720929  T
Q  128 atgatttgcggtggtgcaaacatcaataaaaaa 160  Q
    ||  ||| |||||||||||||||||||||||||    
T  17720930 atatttttcggtggtgcaaacatcaataaaaaa 17720962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 199
Target Start/End: Complemental strand, 10552203 - 10552052
Alignment:
Q  49 gctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaac 148  Q
    ||||| |||||||||||||| |||||||||||| | | | |||| || |||||||||||||||| |||||||| || || ||| ||||||||| ||||||    
T  10552203 gctaggcgccaactcccgatctcgaagcaaaatgatcgg-cccatcaaaatccagcacacaataagtaagacagacgacgtgacttgcggtggagcaaac 10552105  T
Q  149 atcaataaaaaagg-aacaaaagc-aagctagaatgacacacaccctcaaaac 199  Q
    |||||| ||||||| || ||||||  |||| ||| ||||||||||||||||||    
T  10552104 atcaatcaaaaaggaaaaaaaagcgcagctcgaaggacacacaccctcaaaac 10552052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 35062390 - 35062277
Alignment:
Q  50 ctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaaca 149  Q
    ||||||||||||||||||| |||||||||||| ||  | | || ||||||||||||||||||| |||||||  || || ||| ||||||||| |||||||    
T  35062390 ctagacgccaactcccgatctcgaagcaaaatgaatgg-ctcatcagaatccagcacacaataagtaagacggacgacgtgacttgcggtggagcaaaca 35062292  T
Q  150 tcaataaaaaaggaa 164  Q
    ||||| ||| |||||    
T  35062291 tcaatcaaataggaa 35062277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 248
Target Start/End: Original strand, 30236292 - 30236443
Alignment:
Q  97 aatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaacatcaataaaaaaggaacaaa-agcaagctagaatgacacacaccctca 195  Q
    |||||| ||||||||| |||||||   | |||||||| ||||||| |||||||||||| ||||||||| ||| |   |||| ||| ||||||||||||||    
T  30236292 aatccaacacacaataagtaagacgggcgacatgattggcggtggagcaaacatcaatcaaaaaggaaaaaacactcagctcgaaggacacacaccctca 30236391  T
Q  196 aaaccaccataaatacattcacaacccaaaactcaagcaagaggtagcgacaa 248  Q
    |||  ||| |||| || || |||||||| |||||||  ||||| |||||||||    
T  30236392 aaa-taccctaaacaccttgacaacccacaactcaaataagagctagcgacaa 30236443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 24995540 - 24995614
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    |||||||||| || ||||||||| ||||||| |||| ||||| ||||||  || |||||||||||||||||||||    
T  24995540 gcagctagaccccgactcccgatctcgaagccaaatgaaccggcccaccgaaaaccagcacacaatatgtaagac 24995614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 37986997 - 37987077
Alignment:
Q  40 aagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    ||||| ||| |||||| || ||| ||||| ||||||| |||| ||||| ||||||  || |||||||||||||||||||||    
T  37986997 aagaatgcaactagaccccgactaccgatctcgaagccaaatgaaccggcccaccgaaaaccagcacacaatatgtaagac 37987077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 9519435 - 9519361
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    |||||||||| || ||||||||| ||||||| |||| ||||| || ||   || |||||||||||||||||||||    
T  9519435 gcagctagaccccgactcccgatctcgaagccaaatgaaccggcctactgaaaaccagcacacaatatgtaagac 9519361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 15906629 - 15906559
Alignment:
Q  40 aagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaa 110  Q
    |||||||||| ||||| |||||||||||| ||||| ||||| | |||| | | |||||||||| |||||||    
T  15906629 aagaaagcagttagacaccaactcccgatctcgaaacaaaagttaccggctcgccagaatccaacacacaa 15906559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 34389150 - 34389224
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    |||||||||| || ||||||||| ||||||| |||| ||||| || | |  || |||||||||||||||||||||    
T  34389150 gcagctagaccccgactcccgatctcgaagccaaatgaaccggcctatcgaaaaccagcacacaatatgtaagac 34389224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 17657132 - 17657209
Alignment:
Q  33 gccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaa 110  Q
    |||||||||||  | |||||| | || ||||||||| |||||||||||||||||| |||| | ||| ||| |||||||    
T  17657132 gccaaataagattgtagctagccaccgactcccgatctcgaagcaaaattaaccggcccatcggaaaccaacacacaa 17657209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 10248697 - 10248761
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaa 110  Q
    |||||||||| || ||||||||| ||||||||||| |||| | |||||| ||| ||| |||||||    
T  10248697 gcagctagacaccgactcccgatctcgaagcaaaagtaactggcccaccggaaaccaccacacaa 10248761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 27398914 - 27398787
Alignment:
Q  27 tagccagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaa 126  Q
    |||||||||||| ||||  | |||||||| | |||||||||| ||||||||||| |||| |   |||||||||||||||||||||||||||||||  |||    
T  27398914 tagccagccaaacaagattgtagctagacacaaactcccgatctcgaagcaaaaataactggtgcaccagaatccagcacacaatatgtaagacaatcaa 27398815  T
Q  127 catgatttgcggtggtgcaaacatcaat 154  Q
    |||||| ||| |||||||||||||||||    
T  27398814 catgatatgcagtggtgcaaacatcaat 27398787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 248
Target Start/End: Original strand, 1653040 - 1653232
Alignment:
Q  54 acgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaacatcaa 153  Q
    ||||||||||||||| | |||||||||| || || |||| |||||| |||||||||||| |||||||| ||| ||||||||||| | | ||||||||||     
T  1653040 acgccaactcccgatcttgaagcaaaat-aatcggcccatcagaattcagcacacaataagtaagacagacagcatgatttgcgatagagcaaacatcag 1653138  T
Q  154 taaaaaaggaacaaaagc-aagctagaatgacacacaccctcaaaaccaccataaatacattcacaacccaaaactcaagcaagaggtagcgacaa 248  Q
    | ||||||||| ||||||  |||| |||||||| |||||||||||| |||  |||| ||  | |||||| ||||||||| |||||| |||||||||    
T  1653139 tcaaaaaggaa-aaaagctcagcttgaatgacagacaccctcaaaa-cactctaaacaccataacaacctaaaactcaaacaagagctagcgacaa 1653232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 231
Target Start/End: Original strand, 30935538 - 30935720
Alignment:
Q  49 gctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaac 148  Q
    ||||||||||||||||| || |||||||||||| ||||| |||| ||||||||||||||||| | |||||||  |  |||||||||||||| | ||||||    
T  30935538 gctagacgccaactcccaatctcgaagcaaaat-aaccggcccatcagaatccagcacacaacaagtaagacggatgacatgatttgcggttgagcaaac 30935636  T
Q  149 atcaataaaaaaggaacaa-aagc-aagctagaatgacacacaccctcaaaaccaccataaatacattcacaacccaaaactcaa 231  Q
    | |||| | ||||||| || ||||  |||| ||| |||||||||| |||||| |||| |||| || || |||||| |||||||||    
T  30935637 aacaatcacaaaggaaaaagaagctcagctcgaaggacacacaccttcaaaa-caccctaaacaccttaacaacctaaaactcaa 30935720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 164
Target Start/End: Original strand, 25594669 - 25594781
Alignment:
Q  52 agacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaacatc 151  Q
    |||| |||| ||||||| |||||| |||| ||| || |||| |||||||||||| |||||| |||||||| || ||||||   |||||||||||||||||    
T  25594669 agacaccaagtcccgatctcgaagaaaaagtaatcggcccatcagaatccagcatacaataagtaagacagacgacatgaaaagcggtggtgcaaacatc 25594768  T
Q  152 aataaaaaaggaa 164  Q
    ||| |||||||||    
T  25594769 aatcaaaaaggaa 25594781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 47945663 - 47945585
Alignment:
Q  32 agccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaa 110  Q
    ||||||| ||||| || |||||||||||||||||||| ||||||| ||| |||||| | ||||||||||||||||||||    
T  47945663 agccaaacaagaatgctgctagacgccaactcccgatctcgaagctaaagtaaccggcacaccagaatccagcacacaa 47945585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 23328493 - 23328565
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    |||||||||| |||||||||||| |||||||||||  ||||| |||| | ||  |||||||||||||||||||||    
T  23328493 gcagctagacaccaactcccgatctcgaagcaaaa--aaccggcccatcggacaccagcacacaatatgtaagac 23328565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 150
Target Start/End: Original strand, 823565 - 823683
Alignment:
Q  32 agccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatga 131  Q
    ||||||| ||||  ||| |||||| |||||||| ||| | ||||||||||||||||  ||||||||||||| |   |||  |||||| ||  | ||||||    
T  823565 agccaaacaagattgcaactagacaccaactcctgatcttgaagcaaaattaaccggtccaccagaatccaacctgcaaattgtaaggcaatcgacatga 823664  T
Q  132 tttgcggtggtgcaaacat 150  Q
    ||| |||||||||||||||    
T  823665 tttacggtggtgcaaacat 823683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 20611719 - 20611645
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    |||||||||| || ||||| ||| ||||| | |||| ||||||||||||  || |||||||||||||||||||||    
T  20611719 gcagctagaccccgactcctgatctcgaaaccaaatgaaccgacccaccgaaaaccagcacacaatatgtaagac 20611645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 2392651 - 2392725
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    |||||||||| || ||||||||| | ||||| |||| ||||| |||| |  || |||||||||||||||||||||    
T  2392651 gcagctagaccccgactcccgatcttgaagccaaatgaaccgtcccatcgaaaaccagcacacaatatgtaagac 2392725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 2394398 - 2394472
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    |||||||||| || ||||||||| | ||||| |||| ||||| |||| |  || |||||||||||||||||||||    
T  2394398 gcagctagaccccgactcccgatcttgaagccaaatgaaccgtcccatcgaaaaccagcacacaatatgtaagac 2394472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 40023715 - 40023789
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    |||||||||| |||||| ||||| ||||||||||| ||||||  ||||| ||  |||  ||||||||||||||||    
T  40023715 gcagctagacaccaacttccgatctcgaagcaaaaataaccggtccaccggacaccaatacacaatatgtaagac 40023789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 248
Target Start/End: Complemental strand, 12794046 - 12793850
Alignment:
Q  51 tagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaacat 150  Q
    ||||| |||||||||||| |||||||||||  | |||||||| ||||||||||||||||||| |||||||| |  |||||||||| ||||| ||||| ||    
T  12794046 tagactccaactcccgatctcgaagcaaaagga-ccgacccatcagaatccagcacacaataagtaagacaaatgacatgatttgaggtggagcaaatat 12793948  T
Q  151 caataaaaaaggaacaaaagc-aagctagaatgacacacaccctcaaaaccaccataaatacattcacaacccaaaactcaagcaagaggtagcgacaa 248  Q
    |||| ||||||||| ||||||  | || ||| ||||||||||||||||| ||||  ||| || || |||||||| |||| || |||||| ||| |||||    
T  12793947 caatcaaaaaggaaaaaaagctcaactcgaaggacacacaccctcaaaa-cacccaaaacaccttaacaacccacaacttaaacaagagctagggacaa 12793850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 32935469 - 32935587
Alignment:
Q  32 agccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatga 131  Q
    ||||||| ||||  |||||||||| |||||| | ||| || |||||||| ||||||||||||| ||||||||||||||||||||||||  |    |||||    
T  32935469 agccaaagaagattgcagctagacaccaacttctgatctcaaagcaaaagtaaccgacccaccggaatccagcacacaatatgtaagatgt----catga 32935564  T
Q  132 tttgcggtggtgcaaacatcaat 154  Q
    | || ||||||||||||||||||    
T  32935565 tatgtggtggtgcaaacatcaat 32935587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 9223972 - 9223878
Alignment:
Q  52 agacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaa 147  Q
    |||| |||||||||||| |||||||||||| ||||| |||||||| ||||| ||||||| | ||||||||  |||||||||||||||||| |||||    
T  9223972 agacaccaactcccgatctcgaagcaaaat-aaccggcccaccagcatccatcacacaaaaagtaagacaatcaacatgatttgcggtggagcaaa 9223878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 51 - 168
Target Start/End: Complemental strand, 15943951 - 15943839
Alignment:
Q  51 tagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaacat 150  Q
    ||||| |||||||||||| | |||||||||||||||| |||||||| ||||| |     ||| |||||||  || ||| |||||||||||||| ||||||    
T  15943951 tagactccaactcccgatcttgaagcaaaattaaccggcccaccagcatccaac-----ataagtaagactgacgacaagatttgcggtggtgtaaacat 15943857  T
Q  151 caataaaaaaggaacaaa 168  Q
    |||||||||| |||||||    
T  15943856 caataaaaaaagaacaaa 15943839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 13098701 - 13098781
Alignment:
Q  40 aagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    ||||| |||||||||||||||||||| || ||||||||||| |||||| |||| |||||| |||||||||| | |||||||    
T  13098701 aagaatgcagctagacgccaactcccaatctcgaagcaaaagtaaccggcccatcagaatgcagcacacaaaaagtaagac 13098781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 33968734 - 33968832
Alignment:
Q  23 accgtagccagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagaca 121  Q
    |||||||||| ||||| |||||  ||| |||||||||||| ||||| ||| ||||||| |||||||||||||| ||| ||||| | |||| ||||||||    
T  33968734 accgtagccaaccaaacaagaatacagttagacgccaacttccgatctcggagcaaaagtaaccgacccaccaaaattcagcatataataagtaagaca 33968832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 3880714 - 3880830
Alignment:
Q  33 gccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgat 132  Q
    |||||| |||| ||||||||||| || ||||||||| || |||||||| |||| | |||||| ||| |||||| |||| | ||  |||| |  |||||||    
T  3880714 gccaaacaagatagcagctagacaccgactcccgatctcaaagcaaaagtaactggcccaccggaaaccagcaaacaaaaagtctgacaaaggacatgat 3880813  T
Q  133 ttgcggtggtgcaaaca 149  Q
     || |||||||||||||    
T  3880814 atgtggtggtgcaaaca 3880830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 23 - 168
Target Start/End: Original strand, 11379248 - 11379392
Alignment:
Q  23 accgtagccagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacat 122  Q
    ||||||| |||||||| ||||  | |||||||| |||||||||||| | ||| ||||| |||||||||||| |||||||||||||||| |  | |||||     
T  11379248 accgtagtcagccaaacaagattgtagctagacaccaactcccgatcttgaatcaaaaataaccgacccactagaatccagcacacaa-aaatgagacag 11379346  T
Q  123 acaacatgatttgcggtggtgcaaacatcaataaaaaaggaacaaa 168  Q
    | |||||| ||||| ||||||||||||||||| |||||||||||||    
T  11379347 ataacatgttttgcagtggtgcaaacatcaatcaaaaaggaacaaa 11379392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 161
Target Start/End: Complemental strand, 13311785 - 13311660
Alignment:
Q  36 aaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttg 135  Q
    ||||||||| |||| ||||| |||||||||||| |||||| |||| ||  || |||||||||||||||||||||| |||||||||| || |  ||||  |    
T  13311785 aaataagaatgcagttagacaccaactcccgatctcgaaggaaaagtactcggcccaccagaatccagcacacaaaatgtaagacagacgaactgataag 13311686  T
Q  136 cggtggtgcaaacatcaataaaaaag 161  Q
    ||||||||||||||||||| ||||||    
T  13311685 cggtggtgcaaacatcaatcaaaaag 13311660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 164
Target Start/End: Complemental strand, 9107119 - 9106982
Alignment:
Q  27 tagccagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaa 126  Q
    ||||||| |||| ||||  | |||||||| |||||| || || ||||||||||| | |    ||||||| ||||||||||||||||||||| ||| |  |    
T  9107119 tagccaggcaaacaagattgtagctagactccaactaccaatctcgaagcaaaagtgattagcccaccaaaatccagcacacaatatgtaacacaaatca 9107020  T
Q  127 catgatttgcggtggtgcaaacatcaataaaaaaggaa 164  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  9107019 catgatttgtggtggtgcaaacatcaatcaaaaaggaa 9106982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 47457145 - 47457233
Alignment:
Q  32 agccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    ||||||| ||||| ||||| ||||||||||||||||| ||||| ||||| || ||| |||||||||||||||||||||| | |||||||    
T  47457145 agccaaacaagaatgcagccagacgccaactcccgatctcgaatcaaaagtatccggcccaccagaatccagcacacaaaaagtaagac 47457233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 38485444 - 38485341
Alignment:
Q  97 aatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaacatcaataaaaaaggaacaaaagc-aagctagaatgacacacaccctca 195  Q
    |||||||||||||||| |||||||| || || ||| ||||||||| |||||||||||| |||| |||| ||||||  |||| ||| |||||||||||| |    
T  38485444 aatccagcacacaataagtaagacagacgacgtgacttgcggtggagcaaacatcaatcaaaagggaaaaaaagctcagctcgaaggacacacaccctta 38485345  T
Q  196 aaac 199  Q
    ||||    
T  38485344 aaac 38485341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 37794936 - 37794865
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaa 117  Q
    |||||||||| |||||||||||| ||||||| |||| ||||| ||||||  || ||||||||||||||||||    
T  37794936 gcagctagaccccaactcccgatctcgaagccaaatgaaccggcccaccgaaaaccagcacacaatatgtaa 37794865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 149
Target Start/End: Complemental strand, 8745090 - 8744987
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgca 145  Q
    |||||||||| ||  || ||||| ||||||||||| |||||| ||||||  || ||||||||||| | | | |||| || ||||||| ||||||||||||    
T  8745090 gcagctagacaccgccttccgatctcgaagcaaaagtaaccggcccaccgaaaaccagcacacaaaaagcatgacaaacgacatgatatgcggtggtgca 8744991  T
Q  146 aaca 149  Q
    ||||    
T  8744990 aaca 8744987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 38306197 - 38306124
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaaga 119  Q
    |||||||||| || ||||||| | ||||||| |||| ||||| ||||||  || ||||||||||||||||||||    
T  38306197 gcagctagaccccgactcccgttctcgaagccaaatgaaccggcccaccgaaaaccagcacacaatatgtaaga 38306124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 3867050 - 3866979
Alignment:
Q  48 agctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    |||||||| || |||| |||| ||||||||||| ||| ||||||||| ||| |||| ||||||||||||||||    
T  3867050 agctagaccccgactctcgatctcgaagcaaaagtaatcgacccacc-gaaaccaggacacaatatgtaagac 3866979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 42533383 - 42533499
Alignment:
Q  33 gccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgat 132  Q
    |||||||||||| |||||| ||| |  ||||||||| ||||||||||| |||||| |||| | ||  ||||||||||| | ||| |||| || ||| ||     
T  42533383 gccaaataagaatgcagctggacacagactcccgatctcgaagcaaaagtaaccggcccatcggagaccagcacacaaaaagtatgacaaacgacaagag 42533482  T
Q  133 ttgcggtggtgcaaaca 149  Q
     | ||||||||||||||    
T  42533483 atacggtggtgcaaaca 42533499  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 149
Target Start/End: Complemental strand, 16954590 - 16954487
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgca 145  Q
    |||||||||| ||||||| |||| | ||||||||| ||| || |||| | ||| |||||||||| || ||| |||| || ||| ||| ||| ||||||||    
T  16954590 gcagctagacaccaactctcgatctggaagcaaaagtaatcggcccatcggaaaccagcacacagtaagtatgacaaacgacaagatatgcagtggtgca 16954491  T
Q  146 aaca 149  Q
    ||||    
T  16954490 aaca 16954487  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 3419801 - 3419875
Alignment:
Q  46 gcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    |||||||||| || ||||||||| ||||||| |||| ||||| | | ||  || |||||||||||||||||||||    
T  3419801 gcagctagaccccgactcccgatctcgaagccaaatgaaccggctcgccgaaaaccagcacacaatatgtaagac 3419875  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 171
Target Start/End: Original strand, 46133433 - 46133546
Alignment:
Q  57 ccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaacatcaataa 156  Q
    |||||||||||| || ||||||||| | | | |||| ||||||||||||||| ||| | |||||  ||||| ||| |||| || | |||||||||||| |    
T  46133433 ccaactcccgatctcaaagcaaaatga-ctggcccatcagaatccagcacactataagcaagaccaacaacgtgacttgcagttgagcaaacatcaatca 46133531  T
Q  157 aaaaggaacaaaagc 171  Q
    ||| |||| ||||||    
T  46133532 aaagggaaaaaaagc 46133546  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 47326033 - 47326103
Alignment:
Q  49 gctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaaga 119  Q
    ||||||| || ||||||||| ||||||| |||| ||||| |||| |  || ||||||||||||||||||||    
T  47326033 gctagaccccgactcccgatctcgaagccaaatgaaccggcccatcgaaaaccagcacacaatatgtaaga 47326103  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 5860447 - 5860507
Alignment:
Q  60 actcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    ||||||||| ||||||| |||| ||||| |||| |  || |||||||||||||||||||||    
T  5860447 actcccgatctcgaagccaaatgaaccggcccatcgaaaaccagcacacaatatgtaagac 5860507  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 144
Target Start/End: Complemental strand, 12480818 - 12480727
Alignment:
Q  52 agacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgc 144  Q
    |||| ||| |||||||| |||||||||||| || || |||||||  ||||| ||||||| | |||||||| ||  ||||||||||||| ||||    
T  12480818 agacaccagctcccgatctcgaagcaaaat-aatcggcccaccaacatccaacacacaaaaggtaagacaaacggcatgatttgcggttgtgc 12480727  T

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Target: scaffold0062 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 71660 - 71556
Alignment:
Q  50 ctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaaca 149  Q
    |||||| ||||||||| || ||||| ||||| ||||||  |||||||||||||||| ||||| |||||||||    |||||||||||  |||| ||||||    
T  71660 ctagacaccaactccctatctcgaaccaaaagtaaccggtccaccagaatccagcagacaatttgtaagacaatagacatgatttgcaatggtacaaaca 71561  T
Q  150 tcaat 154  Q
    |||||    
T  71560 tcaat 71556  T

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Target: scaffold0062; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 47024 - 46921
Alignment:
Q  50 ctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggtggtgcaaaca 149  Q
    |||||| ||||||| | || ||||| ||||| ||||||  |||||||||||||||| ||||| | ||||||| | ||||||||||||  |||| ||||||    
T  47024 ctagacaccaactcactatctcgaaccaaaagtaaccggtccaccagaatccagcagacaatttttaagaca-ataacatgatttgcaatggtacaaaca 46926  T
Q  150 tcaat 154  Q
    |||||    
T  46925 tcaat 46921  T

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Target: scaffold0062; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 59571 - 59448
Alignment:
Q  31 cagccaaataagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatg 130  Q
    |||||||| ||||  ||| ||| || |||||||||||| || |||||||| |||  | |||||||||||| |||| ||||| |||||||||    |||||    
T  59571 cagccaaacaagattgcaactaaacaccaactcccgatctcaaagcaaaagtaattggcccaccagaatctagcagacaatttgtaagacaatagacatg 59472  T
Q  131 atttgcggtggtgcaaacatcaat 154  Q
    |||| |  |||| |||||||||||    
T  59471 attttcaatggtacaaacatcaat 59448  T

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Target: scaffold0200 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 19325 - 19216
Alignment:
Q  40 aagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggt 139  Q
    ||||| |||||||||| || ||||||||| ||||||||||||||||||||||| | | | |||||| ||||   |||||||| || |||||||    |||    
T  19325 aagaatgcagctagacaccgactcccgatctcgaagcaaaattaaccgacccatcgggaaccagcatacaaacagtaagacaaacgacatgatagatggt 19226  T
Q  140 ggtgcaaaca 149  Q
    ||||||||||    
T  19225 ggtgcaaaca 19216  T

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Target: scaffold0119 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 149
Target Start/End: Original strand, 42277 - 42386
Alignment:
Q  40 aagaaagcagctagacgccaactcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagacatacaacatgatttgcggt 139  Q
    ||||| ||||||||||  | ||||||||| ||||||||||||||||||||||| | | | |||||| ||||   |||||||| || |||||||    |||    
T  42277 aagaatgcagctagacatcgactcccgatctcgaagcaaaattaaccgacccatcgggaaccagcatacaaacagtaagacaaacgacatgatagatggt 42376  T
Q  140 ggtgcaaaca 149  Q
    ||||||||||    
T  42377 ggtgcaaaca 42386  T

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Target: scaffold0068 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 35931 - 35991
Alignment:
Q  60 actcccgatttcgaagcaaaattaaccgacccaccagaatccagcacacaatatgtaagac 120  Q
    ||||||||| ||||||| |||| ||||| ||||||  || |||||||||||||||||||||    
T  35931 actcccgatctcgaagccaaatgaaccggcccaccgaaagccagcacacaatatgtaagac 35991  T

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