View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2985_low_1 (Length: 732)

Name: NF2985_low_1
Description: NF2985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2985_low_1
NF2985_low_1
[»] chr5 (3 HSPs)
chr5 (289-717)||(31646363-31646791)
chr5 (11-58)||(36230340-36230387)
chr5 (11-45)||(31646322-31646356)
[»] chr3 (4 HSPs)
chr3 (126-286)||(34811102-34811260)
chr3 (126-193)||(3608333-3608400)
chr3 (227-283)||(3608399-3608453)
chr3 (11-58)||(33511361-33511407)
[»] chr7 (1 HSPs)
chr7 (11-58)||(40954083-40954130)
[»] chr4 (2 HSPs)
chr4 (22-58)||(46695768-46695804)
chr4 (11-58)||(22487745-22487792)
[»] chr6 (1 HSPs)
chr6 (15-49)||(12588030-12588064)


Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 289 - 717
Target Start/End: Original strand, 31646363 - 31646791
Alignment:
Q  289 tttcgagtaataaacattgaatgttgtctctttactataga--ttaagctgtgtatacaaaacattacacataagagttgtttcaatnnnnnnnnnnnnn 386  Q
    ||||||||||||||||||||||| |||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||| |                 
T  31646363 tttcgagtaataaacattgaatgctgtctctttactttagaaattaagctgtgtatacaaaacattacacataagagttgtttcattcaaaaaaaaaaaa 31646462  T
Q  387 nnnnnnnggagttgtgataaggttggtcataatgaaaaccttcattttgaacaggattggtgagttggtgatgaattagtataaaaaccttctatataat 486  Q
            ||||||||||||||||||| ||| ||||||||||||| |||||||| |||| ||||||||||||||||||| |||||| |||||||| ||||    
T  31646463 aaaaaa--gagttgtgataaggttggtgatagtgaaaaccttcatcttgaacagtattgatgagttggtgatgaattaggataaaacccttctatgtaat 31646560  T
Q  487 ttggattaatatttttatacaaattggatgaaatgaaacttcaaagttaatcgggaattaacttagaaccaaataatatatagtttatgataaaaggtat 586  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31646561 ttggattaatatttttatacaaactggatgaaatgaaactttaaagttaatcgggaattaacttagaaccaaataatatatagtttatgacaaaaggtat 31646660  T
Q  587 tttagcctatgtttataaataaaaaacactatatagtacacnnnnnnnacatga-tattacattatttattattgatgtatttattacaaatttgaaata 685  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  31646661 tttagcctatgtttataaataaaaaacactatatagtacac-ttttttacatgattaatacattatttattattgatgtatttattacaaatttgaaata 31646759  T
Q  686 ccagtcaaatgacaattcttttacattatact 717  Q
    ||||||||||||||||| ||||||||||||||    
T  31646760 ccagtcaaatgacaattattttacattatact 31646791  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 36230387 - 36230340
Alignment:
Q  11 attatactacttaaaaataaaaatttaaaatattttgtgtaggcacaa 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36230387 attatactacttaaaaataaaaatttaaaatattttgtgtaggcacaa 36230340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 31646322 - 31646356
Alignment:
Q  11 attatactacttaaaaataaaaatttaaaatattt 45  Q
    |||||||||||||||||||||||||||||||||||    
T  31646322 attatactacttaaaaataaaaatttaaaatattt 31646356  T

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Target: chr3 (Bit Score: 106; Significance: 1e-52; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 126 - 286
Target Start/End: Complemental strand, 34811260 - 34811102
Alignment:
Q  126 tgtttggtggagcggtacaattttcacgtcttggcaaaagcaaggcataaagtcacgtttgcacataagctacaatttatagtttctcaaaaccacaaca 225  Q
    |||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |    
T  34811260 tgtttgatggagcggtgcaatttccacgtcttggcaaaagcaaggcataaagtcacgtttgcacataagctacaatttgtagcttctcaaaaccacaata 34811161  T
Q  226 aaaaagtgctctaaatgtggagagagagaaggggtcaaacgcggaagcaaacacatactta 286  Q
    |||||| ||| ||||||||  |||| |||||||||||||| | ||||||||||||||||||    
T  34811160 aaaaagcgctttaaatgtg--gagaaagaaggggtcaaacactgaagcaaacacatactta 34811102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 3608333 - 3608400
Alignment:
Q  126 tgtttggtggagcggtacaattttcacgtcttggcaaaagcaaggcataaagtcacgtttgcacataa 193  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||  |||||||||||    
T  3608333 tgtttggtggagcggtacaatttccacatcttggcaaaagcaaggcataaagtcatatttgcacataa 3608400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 3608399 - 3608453
Alignment:
Q  227 aaaagtgctctaaatgtggagagagagaaggggtcaaacgcggaagcaaacacatac 283  Q
    |||||||||||||| |||||||  ||||||||||||||||| |||| ||||||||||    
T  3608399 aaaagtgctctaaacgtggaga--gagaaggggtcaaacgctgaagtaaacacatac 3608453  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 33511407 - 33511361
Alignment:
Q  11 attatactacttaaaaataaaaatttaaaatattttgtgtaggcacaa 58  Q
    |||||| |||||||||||||||||| ||||||||||||||||| ||||    
T  33511407 attatattacttaaaaataaaaatt-aaaatattttgtgtagggacaa 33511361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 40954130 - 40954083
Alignment:
Q  11 attatactacttaaaaataaaaatttaaaatattttgtgtaggcacaa 58  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40954130 attattctacttaaaaataaaaatttaaaatattttgtgtaggcacaa 40954083  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 46695804 - 46695768
Alignment:
Q  22 taaaaataaaaatttaaaatattttgtgtaggcacaa 58  Q
    |||||||||||||||||||||||||||||||||||||    
T  46695804 taaaaataaaaatttaaaatattttgtgtaggcacaa 46695768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 22487745 - 22487792
Alignment:
Q  11 attatactacttaaaaataaaaatttaaaatattttgtgtaggcacaa 58  Q
    |||||||||||| ||||||||||| ||||||||||||||| |||||||    
T  22487745 attatactacttcaaaataaaaatgtaaaatattttgtgtgggcacaa 22487792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 12588030 - 12588064
Alignment:
Q  15 tactacttaaaaataaaaatttaaaatattttgtg 49  Q
    ||||| |||||||||||||||||||||||||||||    
T  12588030 tactaattaaaaataaaaatttaaaatattttgtg 12588064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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