View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2985_low_2 (Length: 451)
Name: NF2985_low_2
Description: NF2985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2985_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 36367080 - 36367256
Alignment:
| Q |
18 |
agcaatttgtaatggtggaaaaatagataggatggacggatttaaattaaattttttaatggatatatcaaaacaacactttaatctatttattatccac |
117 |
Q |
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| T |
36367080 |
agcaatttgtaatggtggaaaaatagataggatggacggatttaaattaaattttttaatggatctatcaaaacaacactttaatctatttattatccac |
36367179 |
T |
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| Q |
118 |
taaaatttcatgaataaaacccaattcatcaatatccattgaataacatccaatctattaacaattttcatccatcc |
194 |
Q |
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| T |
36367180 |
taaaatttcaagaataaaacccaattaatcaatatccattgaataacatccaatctattaacaattttcatccatcc |
36367256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 259 - 361
Target Start/End: Original strand, 36367321 - 36367423
Alignment:
| Q |
259 |
cattggacttaaactttccaatatgtatatataaactcaaaaagtgcattgaaaaatgacttcagaagatttcgaataattttttaagccgttatttctc |
358 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36367321 |
cattggacttaaactttccaatatgcatatataaactcaaaaagtgcattgaaaaatgacttcagaagatttcgaataattttttaagccgttatttctc |
36367420 |
T |
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| Q |
359 |
att |
361 |
Q |
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||| |
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| T |
36367421 |
att |
36367423 |
T |
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