View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2985_low_3 (Length: 445)
Name: NF2985_low_3
Description: NF2985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2985_low_3 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 23700145 - 23700359
Alignment:
| Q |
13 |
aatatagtagcgttatgtcaaaactacctcttttgtcacacaacaccatctcaatatgttgtttgctctttgaattagtaatagtccacaaatcaacaac |
112 |
Q |
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| T |
23700145 |
aatatagtagcgttatgtcaaaactacctcttt-gtcacacaacaccatctcaatatgttgtttgctctttgaattagtaacagtccacaaatcaacaac |
23700243 |
T |
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| Q |
113 |
ttgaacaacaattttccacagagatttggaaccattgaggttctttattttttccaaaggcctagccattgttgctggtaaaataggacttaaaaaggtg |
212 |
Q |
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| T |
23700244 |
tcgaacatcaattttccacagagatttggaaccattgaggttcttgattttttccaaaggcctagccattgttgctggtaaaataggacttaaaaatgtg |
23700343 |
T |
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| Q |
213 |
attaagacatcaatca |
228 |
Q |
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|||||||||||||||| |
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| T |
23700344 |
attaagacatcaatca |
23700359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 227 - 320
Target Start/End: Original strand, 23700900 - 23700993
Alignment:
| Q |
227 |
catgaaggatgatcgtttgaagtggttttatagaagaaactaacgatttaaatacagcaatatacaaaagaaatgtatagtaattgttaccagg |
320 |
Q |
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| T |
23700900 |
catgaaggatgatcgtttgaagtggttttataaaagaaactaacgatataaatacagcaatatacaaaataaatgtatagtaattgttaccagg |
23700993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 44 - 195
Target Start/End: Original strand, 22079876 - 22080027
Alignment:
| Q |
44 |
tttgtcacacaacaccatctcaatatgttgtttgctctttgaattagtaatagtccacaaatcaacaacttgaacaacaattttccacagagatttggaa |
143 |
Q |
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| T |
22079876 |
tttgtcacacaacaccatctcaatatgttgtttgttctttgaatttgcaacagtccacatgtcaacaactcgaacagcaattttccacagagatttgaaa |
22079975 |
T |
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| Q |
144 |
ccattgaggttctttattttttccaaaggcctagccattgttgctggtaaaa |
195 |
Q |
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| T |
22079976 |
tcattgatgttcttgatcttttgcaaaggcctggccattgttgctggaaaaa |
22080027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 44 - 185
Target Start/End: Complemental strand, 1522677 - 1522538
Alignment:
| Q |
44 |
tttgtcacacaacaccatctcaatatgttgtttgctctttgaattagtaatagtccacaaatcaacaacttgaacaacaattttccacagagatttggaa |
143 |
Q |
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| T |
1522677 |
tttgtcacacaacaccatctcaatatgctgtttcttctttgaatttgcaacagtccacatgtcaacaactcgaacaacaattttc--cagggatttggaa |
1522580 |
T |
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| Q |
144 |
ccattgaggttctttattttttccaaaggcctagccattgtt |
185 |
Q |
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| T |
1522579 |
tcattgaggttcttgatcttttgcaaaggcctagccattgtt |
1522538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 125023 - 125156
Alignment:
| Q |
56 |
caccatctcaatatgttgtttgctctttgaattagtaatagtccacaaatcaacaacttgaacaacaattttccacagagatttggaaccattgaggttc |
155 |
Q |
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|||||||||||||||||||||| |||||||||| || |||||| |||||||||||| ||||| |||||||||||| |||||| ||| |||||||| | |
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| T |
125023 |
caccatctcaatatgttgtttgttctttgaatttccaacagtccataaatcaacaactcgaacagcaattttccacaaagattttgaatcattgaggctg |
125122 |
T |
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| Q |
156 |
tttattttttccaaaggcctagccattgttgctg |
189 |
Q |
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| T |
125123 |
ttaattttttggaaaggcctagccattgttgctg |
125156 |
T |
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