View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2985_low_4 (Length: 444)
Name: NF2985_low_4
Description: NF2985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2985_low_4 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: scaffold0022 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 24 - 425
Target Start/End: Original strand, 160226 - 160629
Alignment:
| Q |
24 |
ggtgtgaaaaatgaagctgtaaaaaatggtaaggaatttgtaggtattcattccagtggtaaaagatttgacattactctcgtggataaggaaattccta |
123 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
160226 |
ggtgtgaaaaatgaagctgtaaaaaatggtaaggaagttgtaggtattcattccagtggtaaaagatttgacattactctcgtggataaggaaattccta |
160325 |
T |
|
| Q |
124 |
tcatgaataggattgaggtacatatttatcttgattatgttttccttctaattttgttatgtataatacgttg-aaagaaggatgaaaatgtatgtttca |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
160326 |
tcatgaataggattgaggtacatatttatcttgattatgttttccttctaattttgttatgtataatacgttgaaaagaaggatgaaaatgcatgtttca |
160425 |
T |
|
| Q |
223 |
tgtgtatttatatttaaaataagattcgattgttggg-tgttttttatgcaggcaactaagaaactgcgatcaattggtattcgcagcaagattgttggt |
321 |
Q |
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||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| |
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| T |
160426 |
tgtgtatttatatttaaaataagattcaattgttgggtttttttttatgcaggcaactaagaaactgtgatcaattcgtattcgtagcaagattgttggt |
160525 |
T |
|
| Q |
322 |
gtgtcgtcgtgtacagaaacagaaaaacaagaatttatgaaagctgggatagatgactatcaagtaaaaccattgaccatattggtgtacttaattcgat |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
160526 |
gtgtcgtcgtgtacagaaacagaaaaacaagaatttatgaaagctgggatagatgactatcaagtaaaaccattgaccatattggtgtacttaattcgat |
160625 |
T |
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| Q |
422 |
tctt |
425 |
Q |
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|||| |
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| T |
160626 |
tctt |
160629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 23348623 - 23348422
Alignment:
| Q |
24 |
ggtgtgaaaaatgaagctgtaaaaaatggtaaggaatttgtaggtattcattccagtggtaaaagatttgacattactctcgtggataaggaaattccta |
123 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||| || ||||| || || ||||||||||||||| |||||||||||||||||| |||| |
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| T |
23348623 |
ggtgtgaaaaatgaagctgtaaaaaatggcaaggaagctgtagataatcattg--gtagtcaaagatttgacattattctcgtggataaggaaatgccta |
23348526 |
T |
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| Q |
124 |
tcatgaataggattgaggtacatatttatcttgattatgttttccttctaattttgttatgtataatacgttg-aaagaaggatgaaaatgtatgtttca |
222 |
Q |
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||||| || ||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||| |||||||| ||||||| |||||||| |
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| T |
23348525 |
tcatgtatgggattgaggtacatatttatcttgattctgttttccttctaatttttttctgtataatacgttgaaaagaaggttgaaaatacatgtttca |
23348426 |
T |
|
| Q |
223 |
tgtg |
226 |
Q |
| |
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|||| |
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| T |
23348425 |
tgtg |
23348422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 149 - 425
Target Start/End: Complemental strand, 39635855 - 39635579
Alignment:
| Q |
149 |
ttatcttgattatgttttccttctaattttgttatgtataatacgttgaaa-gaaggatgaaaatgtatgtttcatgtgtatttatatttaaaataagat |
247 |
Q |
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||||||||||| |||| |||| ||| ||||||||||||||||| ||||| || ||||||||||| | ||| |||||| ||||||||||| ||| |||| |
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| T |
39635855 |
ttatcttgattctgttctcctattaactttgttatgtataatacaatgaaaagagggatgaaaatgcacgttccatgtgcatttatatttataatgagat |
39635756 |
T |
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| Q |
248 |
tcgattgttgggtgtttttta-tgcaggcaactaagaaactgcgatcaattggtattcgcagcaagattgttggtgtgtcgtcgtgtacagaaacagaaa |
346 |
Q |
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||| ||||||| | ||||||| |||||||||| |||||||||||||| || ||||| | |||| ||||||||||||||| |||||||| ||| |||||| |
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| T |
39635755 |
tcgcttgttggattttttttaatgcaggcaaccaagaaactgcgatcgatgggtatcggtagcatgattgttggtgtgtcatcgtgtactgaagcagaaa |
39635656 |
T |
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| Q |
347 |
aacaagaatttatgaaagctgggatagatgactatcaagtaaaaccattgaccatattggtgtacttaattcgattctt |
425 |
Q |
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|||||||||||||| |||| ||||| |||| |||||||| |||||||||||| |||||||| |||||||| |||||| |
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| T |
39635655 |
aacaagaatttatggaagcggggattaatgattatcaagtgaaaccattgacc--attggtgtgcttaattccattctt |
39635579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 39636025 - 39635897
Alignment:
| Q |
24 |
ggtgtgaaaaatgaagctgtaaaaaatggtaaggaatttgtaggtattcattccagtggtaaaagatttgacattactctcgtggataaggaaattccta |
123 |
Q |
| |
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|||||||||| ||||||||||||||||||||| ||| ||||| ||| |||| || |||| |||||||||| |||| |||| ||||||||||||| |||| |
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| T |
39636025 |
ggtgtgaaaagtgaagctgtaaaaaatggtaaagaagctgtagatatccattgcaatggtcaaagatttgatattattctcatggataaggaaatgccta |
39635926 |
T |
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| Q |
124 |
tcatgaataggattgaggtacatatttat |
152 |
Q |
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|||||||| ||||||||||||||| |||| |
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| T |
39635925 |
tcatgaatgggattgaggtacatagttat |
39635897 |
T |
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