View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2986-Insertion-17 (Length: 338)

Name: NF2986-Insertion-17
Description: NF2986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2986-Insertion-17
NF2986-Insertion-17
[»] chr1 (4 HSPs)
chr1 (184-338)||(5174846-5175000)
chr1 (8-181)||(5178208-5178380)
chr1 (184-338)||(52002649-52002800)
chr1 (59-181)||(52008403-52008525)


Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 184 - 338
Target Start/End: Complemental strand, 5175000 - 5174846
Alignment:
Q  184 cgttaaacaaaaaagtaacatcattagattaatcaatgtattttatttgccaataatatttgtaacattattataaaagatagattcaatggtttgtttc 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5175000 cgttaaacaaaaaagtaacatcattagattaatcaatgtattttatttgccaataatatttgtaacattattataaaagatagattcaatggtttgtttc 5174901  T
Q  284 cactaaatctttacctgatatttgatcaaattaaatccaaatactaaactccttt 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5174900 cactaaatctttacctgatatttgatcaaattaaatccaaatactaaactccttt 5174846  T

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Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 5178380 - 5178208
Alignment:
Q  8 ttaacttgaggttctaaactcttatactgacaannnnnnnnnnnnaaattgtacaagctctttacttagaagggcatgcttacttgcttctagaacttca 107  Q
    ||||||||||||||||| |||||||||||||||            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5178380 ttaacttgaggttctaa-ctcttatactgacaattttttctttttaaattgtacaaggtctttacttagaagggcatgcttacttgcttctagaacttca 5178282  T
Q  108 attggttctatttacaatcctttgataggaagatagataactgcctctcaatctgatgatgggaaattttgatt 181  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5178281 attggttctatttacaatcctttaataggaagatagataactgcctctcaatctgatgatgggaaattttgatt 5178208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 184 - 338
Target Start/End: Complemental strand, 52002800 - 52002649
Alignment:
Q  184 cgttaaacaaaaaagtaacatcattagattaatcaatgtattttatttgccaataatatttgtaacattattataaaagatagattcaatggtttgtttc 283  Q
    ||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||| ||| ||   ||||||||||||| | ||||||||||    
T  52002800 cgttaaacaaaaaagtaacataataagattaatcaaggtattttatttgccaataatatttgtaccatcat---aaaagatagattctacggtttgtttc 52002704  T
Q  284 cactaaatctttacctgatatttgatcaaattaaatccaaatactaaactccttt 338  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||| |||||    
T  52002703 cactaaatctttacttgatatttgatcaaattaaatccaaatactgaacaccttt 52002649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 59 - 181
Target Start/End: Complemental strand, 52008525 - 52008403
Alignment:
Q  59 tacaagctctttacttagaagggcatgcttacttgcttctagaacttcaattggttctatttacaatcctttgataggaagatagataactgcctctcaa 158  Q
    |||||| |||||||||||||| | ||| ||  |||| ||||||||||||| | |||||||||||  |||||| || ||||||||||||| ||||||| ||    
T  52008525 tacaagatctttacttagaagagaatgattttttgcctctagaacttcaaatagttctatttaccttcctttaattggaagatagataaatgcctctgaa 52008426  T
Q  159 tctgatgatgggaaattttgatt 181  Q
    | |||||||||||||||||||||    
T  52008425 tttgatgatgggaaattttgatt 52008403  T

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