View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2986-Insertion-2 (Length: 969)
Name: NF2986-Insertion-2
Description: NF2986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2986-Insertion-2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 492 - 969
Target Start/End: Original strand, 35047440 - 35047918
Alignment:
| Q |
492 |
agaatgttaattgaacgaatcaaagtaatagttgaatctgcaaccatatgttatagtgatgaagattttaaatacggtcatgtcgcaatctttgaaactg |
591 |
Q |
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| T |
35047440 |
agaatgttaattgaacgaatcaatgtaatagttgaaactgcaaccatatgttatagtgatgaagattttaaatacggtcatgtcgcaatctttgaaactg |
35047539 |
T |
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| Q |
592 |
caaagaaacagtcggtcgagcgacctcaattgcagatacataaataaaacttgatgcttcaccaaaatcagagtcgcagaacattttttaaaaccgtgac |
691 |
Q |
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| T |
35047540 |
caaagaaacagtcggtcgagcgacctcaattgcagatacataaataaaacttgatgcttcaccaaaatcagagtcacagaacattttttaaaaccgtgac |
35047639 |
T |
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| Q |
692 |
aaccatatgccatctttacattgtgcactcagaaacacgatacaagataattgttcttgagaatccaagtatgaatcttgactgaaagaatccttgatcg |
791 |
Q |
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| T |
35047640 |
aaccatatgccatctttacattgtgcactcagaaacacgatacaagataattgttcttgagaatccaagtacgaatcttgactgaaagaatccttgatcg |
35047739 |
T |
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| Q |
792 |
gactttacttacctctcaggggaacttcagattgtcaatgttcatttctcttaggaaccggaggattacgaccaaagaagaaacacaaataacaactcaa |
891 |
Q |
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| T |
35047740 |
gactttacttacctctcaggcgaacttcagattgtcaatgttcatttctcttaggaaccggaggattacgaccaaagaagaaacacaaataacaactcaa |
35047839 |
T |
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| Q |
892 |
gcgattctccttacactaactactctaagaagttttttctcttcatgaatc-aataatagacagaaatttgagtagtga |
969 |
Q |
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| T |
35047840 |
acaattttccttacactaactactctaagaagttttttctcttcatggatcaaataatagacataaatttgagtagtga |
35047918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 8 - 445
Target Start/End: Original strand, 35047009 - 35047444
Alignment:
| Q |
8 |
aaaccacctagtcattgaaaacaagcacgcatataagataagtgatattcaaaaattggatatggaaattgaatgtgaaaactgaaatcacttgggtctt |
107 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35047009 |
aaaccacctagtcattgaaaacaagcacacatataagataagtgatattcaaaaattggatatggaaattgaatgtgaaaactgaaatcacttgggtctt |
35047108 |
T |
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| Q |
108 |
agacacttaccatttgccttgatcgactaccgatatatgaacgacatcatcattccatttgaatttcttccattcgtcgacatttccatcataatggaaa |
207 |
Q |
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| T |
35047109 |
agacacttaccatttgccttgatcgactaccgatatatgaacgacatcatcattccatttgaatttcttccattcgtcgacatttccatcataatggaaa |
35047208 |
T |
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| Q |
208 |
agcgtgacagtgaaattacttgctagaaactgcaatttggtgtagaaagagggtcatgatccacggattaaacagagtattagtaatgagaaatttggac |
307 |
Q |
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| T |
35047209 |
agcgtgacagtgaaattacttgctagaaactgcaatttggtgtagaaagagggtcatgatccacggattaaacagagtattagtaatgagaaatttggac |
35047308 |
T |
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| Q |
308 |
aaaaaactcattaaaggacctttttgaccatcttgtcaactaaatctttctgctttattccaaccgccattgcaaacaggctggttgatggttttacctt |
407 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35047309 |
--aaaactcattgaaggacctttttgaccatcttgtcaactaaatctttctgctttattccaaccgccattgcaaacaggctggttgatggctttacctt |
35047406 |
T |
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| Q |
408 |
aacctgctcaaatgtgagcaattagtaaacatgagaat |
445 |
Q |
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| T |
35047407 |
aacctgctcaaatgtgagcaattagtaaacatgagaat |
35047444 |
T |
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