View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2986-Insertion-20 (Length: 173)
Name: NF2986-Insertion-20
Description: NF2986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2986-Insertion-20 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 7 - 173
Target Start/End: Original strand, 17922600 - 17922769
Alignment:
| Q |
7 |
agaaattttgttcaagacctgaaattaaaatcaagaaggttattattaccattatattttgtagtttgggaattttgaaatgc---acaacaagatgatt |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17922600 |
agaaattttgttcaagacctgaaattaaaatcaagaaggttattattaccattatattttgtagtttgggaattttgaaatgcacaacaacaagatgatt |
17922699 |
T |
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| Q |
104 |
aaaataaaattctaattccataagcaattaatgcgttggttatgatcgaaataaacttataagaatatca |
173 |
Q |
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| T |
17922700 |
aaaataaaattctaattccataagcaattaatgcgttggttatgatcgaaataaacttataagaatatca |
17922769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 3e-68; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 3e-68
Query Start/End: Original strand, 7 - 173
Target Start/End: Complemental strand, 18556087 - 18555921
Alignment:
| Q |
7 |
agaaattttgttcaagacctgaaattaaaatcaagaaggttattattaccattatattttgtagtttgggaattttgaaatgcacaacaagatgattaaa |
106 |
Q |
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| T |
18556087 |
agaaatattgttcaaaacctgaaattaaaatcaagaaggtaattattaccattatattttgtagtttgggaattttgaaatgcacaataagatgataaaa |
18555988 |
T |
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| Q |
107 |
ataaaattctaattccataagcaattaatgcgttggttatgatcgaaataaacttataagaatatca |
173 |
Q |
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| T |
18555987 |
ataaaattctaattccataagcaattaatgagttagttatgattcaaataaacttataagaatatca |
18555921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 7 - 173
Target Start/End: Complemental strand, 12949622 - 12949456
Alignment:
| Q |
7 |
agaaattttgttcaagacctgaaattaaaatcaagaaggttattattaccattatattttgtagtttgggaattttgaaatgcacaacaagatgattaaa |
106 |
Q |
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| T |
12949622 |
agaaattttgttcaagacctgaaattaaaatcaagaaggtcattattaccattatattttgtagtctaggaattttgaaatgcacaataagatgataaaa |
12949523 |
T |
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| Q |
107 |
ataaaattctaattccataagcaattaatgcgttggttatgatcgaaataaacttataagaatatca |
173 |
Q |
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| T |
12949522 |
ataaaattctaatttcataagcaattaatgagttggttatgattcaaataagcatataagaatatca |
12949456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 7 - 159
Target Start/End: Complemental strand, 12959081 - 12958929
Alignment:
| Q |
7 |
agaaattttgttcaagacctgaaattaaaatcaagaaggttattattaccattatattttgtagtttgggaattttgaaatgcacaacaagatgattaaa |
106 |
Q |
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| T |
12959081 |
agaaattttgttcaaaacctgaaattaaaatcaagaaggtcattattaccattatattttatagtttgggaattttgaaatgcacaataagatgataaaa |
12958982 |
T |
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| Q |
107 |
ataaaattctaattccataagcaattaatgcgttggttatgatcgaaataaac |
159 |
Q |
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| T |
12958981 |
ataaaattctaattccataaccaattaatgagttagttatgattcaaataaac |
12958929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 12908194 - 12908064
Alignment:
| Q |
7 |
agaaattttgttcaagacc-tgaaattaaaatcaagaaggttattattaccattatattttgtagtttgggaattttgaaatgcacaacaagatgattaa |
105 |
Q |
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| T |
12908194 |
agaaattttgttcaagaccctgaaattaaaatcaagaaggtcattattaccattatattttgtagtttgggaattttgaaatacaaaataagatgataaa |
12908095 |
T |
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| Q |
106 |
aataaaattctaattccataagcaattaatg |
136 |
Q |
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| T |
12908094 |
aataaaactctaattccataagcaattaatg |
12908064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 95; E-Value: 9e-47
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 12933283 - 12933153
Alignment:
| Q |
7 |
agaaattttgttcaagacc-tgaaattaaaatcaagaaggttattattaccattatattttgtagtttgggaattttgaaatgcacaacaagatgattaa |
105 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || |||||||| || |
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| T |
12933283 |
agaaattttgttcaagaccctgaaattaaaatcaagaaggtcattattaccattatattttgtagtttgggaattttgaaatacaaaataagatgataaa |
12933184 |
T |
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| Q |
106 |
aataaaattctaattccataagcaattaatg |
136 |
Q |
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| T |
12933183 |
aataaaactctaattccttaagcaattaatg |
12933153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 12900478 - 12900431
Alignment:
| Q |
81 |
ttgaaatgcacaacaagatgattaaaataaaattctaattccataagc |
128 |
Q |
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| T |
12900478 |
ttgaaatgcacaacaagatgataaaaataaaattctaattccataagc |
12900431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 12900525 - 12900486
Alignment:
| Q |
7 |
agaaattttgttcaagacctgaaattaaaatcaagaaggt |
46 |
Q |
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| T |
12900525 |
agaaattttgttcaagacctgaaattaaaatcaagaaggt |
12900486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 10612718 - 10612583
Alignment:
| Q |
23 |
acctgaaattaaaatcaagaag---gttattattaccattatattttgtagtttgggaattttgaaatgcacaacaagatgattaaaataaaattctaat |
119 |
Q |
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|||||||||| ||||||||||| | |||||||| ||||||||||| ||||| |||| |||||||||||||| |||||||| ||||| ||||| | |
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| T |
10612718 |
acctgaaattcaaatcaagaagaaggccattattactattatattttgaagtttaggaaatttgaaatgcacaataagatgataaaaatcaaatt---ag |
10612622 |
T |
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| Q |
120 |
tccataagcaattaatgcgttggttatgatcgaaataaa |
158 |
Q |
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||||||| |||||| || ||| |||||||| ||||||| |
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| T |
10612621 |
tccataaacaattattgagttagttatgattcaaataaa |
10612583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 10716248 - 10716299
Alignment:
| Q |
82 |
tgaaatgcacaacaagatgattaaaataaaattctaattccataagcaatta |
133 |
Q |
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| T |
10716248 |
tgaaatgcacaataagatgataaagatcaaattataattccataagcaatta |
10716299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 10565983 - 10565883
Alignment:
| Q |
48 |
attattaccattatattttgtagtttgggaattttgaaatgcacaacaagatgattaaaataaaattctaattccataagcaattaatgcgttggttatg |
147 |
Q |
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|||||||||||| ||||||||||||| |||||||| ||||||| || | ||| || ||||| |||| ||| ||||||| ||| ||||| || |||||| |
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| T |
10565983 |
attattaccattgtattttgtagtttaggaatttt-aaatgcaaaatatgataataaaaatcaaatgataactccataaccaaataatgatttagttatg |
10565885 |
T |
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| Q |
148 |
at |
149 |
Q |
| |
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|| |
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| T |
10565884 |
at |
10565883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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