View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2986-Insertion-3 (Length: 968)
Name: NF2986-Insertion-3
Description: NF2986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2986-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 723; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 723; E-Value: 0
Query Start/End: Original strand, 7 - 966
Target Start/End: Original strand, 2525656 - 2526612
Alignment:
| Q |
7 |
attaagaatgtaaataaataaattaatgtctgtacagaaacataaatgagatattacttaatatcaagaaactaaggtattcagcaaattgaattaacaa |
106 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
2525656 |
attaagaatgtaaataaatagattaatgtccgtacagaaacttaaatgagatattacttaatatcaagaaactaaggtattcagaaaattgaatcaacaa |
2525755 |
T |
|
| Q |
107 |
gaacattttcagaggatccaaactataacttataagcaaaatctaaccttctctttcctcagcttttcattttcctcttccagacgcgagactttgatct |
206 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
2525756 |
aaacattttcat-ggatccaaactataacttttaagcaaaatccaaccttctctttcctcagcttatcattttcctcttccagtcgcgagactttgatct |
2525854 |
T |
|
| Q |
207 |
ccaactcagttgtgtatgcctaattacagttataatccatggaaaacgttgtttacttgggagaaatgggtaatnnnnnnnttagaacttcaataacatg |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| |||||| ||||| ||||||||||||| |
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| T |
2525855 |
ccaactcagttgtgtatgcctaattacagttaaaatccatggtaaaagttgtttacttgggagaaatcggtaataaaaaa-ttagatcttcaataacatg |
2525953 |
T |
|
| Q |
307 |
gcattcnnnnnnnnnnnnnnnnnnnnntcacctgtttccttgctcttgagcgcgcagcagattcccgattcttaatcatcctcttctgcttcctctcaac |
406 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2525954 |
gcattcaaaagagaaagaaaaaaaa--tcacctgtttccttgctcttgagcgcgcagcagattcccgattcttaatcatcctcttctgcttcctctcaac |
2526051 |
T |
|
| Q |
407 |
agtcctctcaatcatgtcctccggtccccgttttctcgcagatttctgtgtatcagataagtttcctatcactggtgaagccaacgccacctgaccatct |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
2526052 |
agtcctctcaatcatgtcctccggtccccgttttctcgcagatttctgtgtatcagataagtttcctattactggtgaagccaatgccacctgaccatct |
2526151 |
T |
|
| Q |
507 |
gtatatggaacaccgtccgatggagcaccggctgccatgtgcagtgactgcgctatgatctggcttggaacataagtcgtcatcacactttgttgtggat |
606 |
Q |
| |
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||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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|
| T |
2526152 |
gtatatggaacactgtccgacggagcaccggctgccatgtgcaatgactgcgctatgatctggctcggaacataagtcgccatcacactttgttgtggat |
2526251 |
T |
|
| Q |
607 |
gctgatagtgtggttgtgcatactgtatccacggaccatgtggagaaaattgtggcaatgctacattcgattcaacaacactgactttaggagtaggacc |
706 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2526252 |
gctgatagtgtggttgtgcatactgtatccacggaccatgtggagaaaactgtggcaacgctacattcgattcaacaacactgactttaggagtaggacc |
2526351 |
T |
|
| Q |
707 |
attagtattctttttatttgaagatgcagccgaaacaacgcctgctttcaccaaaaaatcctctaatgtcatctcacccaaagtagattgtatctcttga |
806 |
Q |
| |
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||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2526352 |
attagtattttttctatttgaagatgcagctgaaacaacgcctgctttcaccaaaaaatcctctaatgtcatctcacccaaagtagattgtatctcttga |
2526451 |
T |
|
| Q |
807 |
gacttcacctcctcatgatcgttgctttgttggatatctctccaaacttcatcaactgtcttcttgcttaacggaccggttaatgacagatta-gttgac |
905 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
2526452 |
gacttcacctcctcatgatcgttgctttgttggatatctctccaaacttcatcaactgtcttcttgcttaacggaccggttaacgacagattaggttgac |
2526551 |
T |
|
| Q |
906 |
gttgaaaaacaacttgtccagcttgagctgtgttctcgttttccatgcgaattgatcggtt |
966 |
Q |
| |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
2526552 |
gttgaaaaacaacttctccggcttgagctgtgttctcgttttccatgcgaattgattggtt |
2526612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 7e-21; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 334 - 430
Target Start/End: Complemental strand, 16811660 - 16811564
Alignment:
| Q |
334 |
tcacctgtttccttgctcttgagcgcgcagcagattcccgattcttaatcatcctcttctgcttcctctcaacagtcctctcaatcatgtcctccgg |
430 |
Q |
| |
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|||||||||||| ||||||||| || |||||||||||||||||||| |||||||| |||||| | |||||||||||| |||| | ||| |||||||| |
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| T |
16811660 |
tcacctgtttccgtgctcttgaacgggcagcagattcccgattcttgatcatccttttctgccttctctcaacagtcttctccaccatatcctccgg |
16811564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 711 - 874
Target Start/End: Complemental strand, 16811322 - 16811159
Alignment:
| Q |
711 |
gtattctttttatttgaagatgcagccgaaacaacgcctgctttcaccaaaaaatcctctaatgtcatctcacccaaagtagattgtatctcttgagact |
810 |
Q |
| |
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|||||| ||||||| |||||||| | | ||||| |||||||||||||| |||||||| ||||||||||| || ||||||| |||| ||||| | |||| |
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| T |
16811322 |
gtattcgttttattagaagatgcttctgcaacaatacctgctttcaccaagaaatcctccaatgtcatctctcctaaagtagtttgtctctctcgtgact |
16811223 |
T |
|
| Q |
811 |
tcacctcctcatgatcgttgctttgttggatatctctccaaacttcatcaactgtcttcttgct |
874 |
Q |
| |
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|| ||||| || || |||||||||||||||||||||| ||||| || ||||||||||| |
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| T |
16811222 |
tcttttcctcgctgtctttcttttgttggatatctctccaaacctcatccacagtcttcttgct |
16811159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 16811833 - 16811766
Alignment:
| Q |
160 |
tttcctcagcttttcattttcctcttccagacgcgagactttgatctccaactcagttgtgtatgcct |
227 |
Q |
| |
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|||||||||| ||||||||||||||||||| || || ||||| |||||||| ||| ||||||| |||| |
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| T |
16811833 |
tttcctcagcatttcattttcctcttccaggcgtgaaactttaatctccaattcatttgtgtaagcct |
16811766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 593 - 637
Target Start/End: Complemental strand, 16811428 - 16811384
Alignment:
| Q |
593 |
actttgttgtggatgctgatagtgtggttgtgcatactgtatcca |
637 |
Q |
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| T |
16811428 |
actttgttgtagatgctgatattgtggttgtggatactgtatcca |
16811384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 5041673 - 5041727
Alignment:
| Q |
337 |
cctgtttccttgctcttgagcgcgcagcagattcccgattcttaatcatcctctt |
391 |
Q |
| |
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||||||| || |||| ||| || |||||||||||||||||||| ||||||||||| |
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| T |
5041673 |
cctgttttctagctcgtgaacgtgcagcagattcccgattcttgatcatcctctt |
5041727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 34279345 - 34279391
Alignment:
| Q |
363 |
gcagattcccgattcttaatcatcctcttctgcttcctctcaacagt |
409 |
Q |
| |
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| T |
34279345 |
gcagattccctatttttaatcatcctcttctgcctcctctccacagt |
34279391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 9016230 - 9016284
Alignment:
| Q |
337 |
cctgtttccttgctcttgagcgcgcagcagattcccgattcttaatcatcctctt |
391 |
Q |
| |
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||||||| || |||| ||| || |||||||||||||||||||| ||||||||||| |
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|
| T |
9016230 |
cctgttttctagctcgtgaccgtgcagcagattcccgattcttgatcatcctctt |
9016284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 336 - 409
Target Start/End: Original strand, 9041146 - 9041219
Alignment:
| Q |
336 |
acctgtttccttgctcttgagcgcgcagcagattcccgattcttaatcatcctcttctgcttcctctcaacagt |
409 |
Q |
| |
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|||||| | ||||||| ||| || ||||||||||||| ||| || ||||||||||| ||| ||||||| ||||| |
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| T |
9041146 |
acctgtcttcttgctcgtgaccgagcagcagattccctattttttatcatcctcttttgcctcctctcgacagt |
9041219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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