View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2986-Insertion-4 (Length: 855)
Name: NF2986-Insertion-4
Description: NF2986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2986-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 8 - 573
Target Start/End: Original strand, 52824075 - 52824640
Alignment:
| Q |
8 |
caaagagtgtgatttgaaggttcatggtgtcaacgaacacaccaagaagcataataggtttcttctaagtgggatcaagctgcactctcctgctcctcct |
107 |
Q |
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| T |
52824075 |
caaagagtgtgatttgaaggttcacggtgtcaacgaacacaccaagaagcataataggtttcttctaagtgggatcaagctgcactctcctgctcctcct |
52824174 |
T |
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| Q |
108 |
cccactcttcatgaagaaactggtaattttactatatctgagtacttgataaacactatcccaggttggaagtttgaagatttccttgattccccttctt |
207 |
Q |
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| T |
52824175 |
cccactcttcatgaagaaactggtaattttactatatctgagtacttgataaacactatcccaggttggaagtttgaagatttccttgattccccttctt |
52824274 |
T |
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| Q |
208 |
cttctgttccctctcatgaactacaacaccagaatcatatagtgcatgatgatgctaattatcatattcatgaggaaaatattctggtttctttctctag |
307 |
Q |
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| T |
52824275 |
cttctgttccctctcatgaactacaacaccagaatcatatagtgcatgatgatgctaattatcatattcatgaggaaaatattctggtttctttctctag |
52824374 |
T |
|
| Q |
308 |
cgagagcatgcgtaggatctgtgttcctcaagcaccactgtattattctgaaaaaatggataacagatcaaacaccgtcaatttcagcagcagtttgggg |
407 |
Q |
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| T |
52824375 |
cgagagcatgcgtaggatctgtgttcctcaagcaccactgtattattctgaaaaaatggataacagatcaaacaccgtcaatttcagcagcagtttgggg |
52824474 |
T |
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| Q |
408 |
gatttcacagttccacagataacaatccctcccaattaacattgtcacatcttatnnnnnnnnnnnnncaacaatgatatagacatatctttagatttca |
507 |
Q |
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| T |
52824475 |
gatttcacagttccacagataacaatccctcccaattaacattgtcacatcttattatatatatatatcaacaatgatatagacatatctttagatttca |
52824574 |
T |
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| Q |
508 |
tacattcattcaacatctgattttctctctagcactcttcttttcacatcatcaaactatcatatc |
573 |
Q |
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| T |
52824575 |
tacattcattcaacatctgattttctctctagcactcttcttttcacatcatcaaactgtcatatc |
52824640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 620 - 855
Target Start/End: Original strand, 52824696 - 52824932
Alignment:
| Q |
620 |
agatgtatacactacaggg-tgtacacaaaacgttgatgtagctctagtatgaatattttgtttgtttttgtgctcctctcaaccgggttgcgtacgttc |
718 |
Q |
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| T |
52824696 |
agatgtatacactacaggggtgtacacaaaacgttgatgtagctctagtatgaatattttgtttgtttttgtgctcctctcaaccgggttgtgtacgttc |
52824795 |
T |
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| Q |
719 |
ttcataaatcagtgtaaaatattaaatatttctttcacattttgtaaataagatctttaattgaattaaataactcaacttgattgattaatttttgttt |
818 |
Q |
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| T |
52824796 |
ttcataaatcagtgtaaaatattaaatatgtctttcacattttgtaaataagatctttaattgaattaaataactcaacttgattgattaatttttgttt |
52824895 |
T |
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| Q |
819 |
gcaacttgttaaaaggggtagtacgtcttgttaaatg |
855 |
Q |
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| T |
52824896 |
gcaacttgttaaaaggggtagtacatcttgttaaatg |
52824932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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