View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2986-Insertion-6 (Length: 890)
Name: NF2986-Insertion-6
Description: NF2986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2986-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 747; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 747; E-Value: 0
Query Start/End: Original strand, 7 - 883
Target Start/End: Original strand, 41936440 - 41937318
Alignment:
| Q |
7 |
acctttttggcatcccaattggtggatcacctgaatgtgagcaatagtaagatattaattgactgatgggatgggtggaacagtgaatataaacgagttc |
106 |
Q |
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| T |
41936440 |
acctttttggcatcccaattggtggatcacctgaatgtgagcaatagtaagatattaattgattgatgggatgggtggaacagtgaatataaacgagttc |
41936539 |
T |
|
| Q |
107 |
aggtttgattatattagggctatgtccaatcaaggatataaaggagtatatgtcctaccattaccaacaagttctttatacctggtcccattaatggtgt |
206 |
Q |
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| T |
41936540 |
aggtttgattatattagggctatgtccaatcaaggatataaaggagtatatgtcctaccattaccaacaagttctttatacctggtcctattaatggtgt |
41936639 |
T |
|
| Q |
207 |
ctcccttctctcnnnnnnngcccaaggtgaaaagtgccacagccttcatgtgctgcttcaattcctgattagctgggtaacataacacaacacaaaaatg |
306 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41936640 |
ctcccttctctctttttttgcccaaggtgaaaagtgccacagccttcatgtgctgcttcaattcctgattagctgggtaacataacacaacacaaaaatg |
41936739 |
T |
|
| Q |
307 |
gtttcatttttctcccactttttctcccgacattcagaatttcaccatttatatatgccatctagctaatcatgcaaaagtttccactcatttcaatttg |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41936740 |
gtttcatttttctcccactttttctcccgacattcagaatttcaccatttatatatgccatctagctaatcatgcaaaagtttccactcatttcaatttg |
41936839 |
T |
|
| Q |
407 |
aagacttaagtaggtggttatcgagcttcacagcttcaccaatcgtttaggagaatacaaattttaatttcgatgagaataattattaataaattttgat |
506 |
Q |
| |
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| T |
41936840 |
aagacttaagtaggtggttatcgagcttcactgcttcaccaatcgtttaggagaatacaaattttaatttcaatgagaataattattgataaattttgat |
41936939 |
T |
|
| Q |
507 |
tacctctcgatcaaacttcaggtgacaattaaagctcagttagcgtaagaattgaagataaaatctaagaaagagttttgaatgaatatag--nnnnnnn |
604 |
Q |
| |
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||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
41936940 |
tacctctcgattaaatttcaggtgacaattaaagctcagttagcgtaagaattgaagataaaatttaagaaagagttttgaatgagtatagttttttttt |
41937039 |
T |
|
| Q |
605 |
nnnnnnnnnaaataatcttcccaatataagtgtagagataatctatttgaggatttataatgtatatttaagggccatctctttcaaatagtgaattttc |
704 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41937040 |
tttttttttaaataatcttcccaatataagtgtagagataatctatttgaggattaataatgtatatttaacggccatctctttcaaatagtgaattttc |
41937139 |
T |
|
| Q |
705 |
ctatgtacaagtcaatgatcaaatttatgatcacatgctaattaaggaatatgagttccttctttgaataaaataaaaagttgagacctaggttgtcttg |
804 |
Q |
| |
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| T |
41937140 |
ctatgtacaagtcaatgatcaaatttatgatcacatgctaattaaggaatatgagttccttcgttgaataaaataaaaagttgagacctaggttgtcttg |
41937239 |
T |
|
| Q |
805 |
gaaaatttgtaagtaatttatgcaacatccaataaaaattagttacatgaataaatttataagttgtatccaaaaacta |
883 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41937240 |
gaaaatttgtaagtaatttatgcaacatccaataaaaattagttacatgaataaatttacaagttgtatccaaaaacta |
41937318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 793 - 844
Target Start/End: Complemental strand, 34286822 - 34286771
Alignment:
| Q |
793 |
taggttgtcttggaaaatttgtaagtaatttatgcaacatccaataaaaatt |
844 |
Q |
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||||||||||| ||||| ||||||||||||||| ||||| | |||||||||| |
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| T |
34286822 |
taggttgtctttgaaaaattgtaagtaatttatccaacaactaataaaaatt |
34286771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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