View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2986-Insertion-7 (Length: 865)

Name: NF2986-Insertion-7
Description: NF2986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2986-Insertion-7
NF2986-Insertion-7
[»] chr4 (6 HSPs)
chr4 (660-865)||(11567721-11567916)
chr4 (659-848)||(11566991-11567176)
chr4 (389-489)||(6054370-6054470)
chr4 (661-735)||(35298660-35298734)
chr4 (327-435)||(18440516-18440624)
chr4 (394-490)||(49683363-49683459)
[»] chr3 (4 HSPs)
chr3 (671-865)||(7959220-7959414)
chr3 (658-848)||(7959953-7960144)
chr3 (328-490)||(22241083-22241245)
chr3 (401-490)||(3092715-3092803)
[»] chr5 (4 HSPs)
chr5 (661-865)||(5301858-5302056)
chr5 (763-848)||(5289417-5289503)
chr5 (661-735)||(28991647-28991721)
chr5 (695-741)||(24894558-24894604)
[»] chr1 (6 HSPs)
chr1 (659-735)||(37581053-37581129)
chr1 (659-735)||(37581604-37581680)
chr1 (661-727)||(32367294-32367360)
chr1 (671-727)||(32369591-32369648)
chr1 (385-448)||(33028221-33028284)
chr1 (148-212)||(26809638-26809702)
[»] chr2 (2 HSPs)
chr2 (660-728)||(17252911-17252979)
chr2 (286-470)||(28217303-28217481)
[»] chr7 (2 HSPs)
chr7 (329-448)||(26930-27049)
chr7 (394-447)||(24695311-24695364)
[»] chr8 (1 HSPs)
chr8 (378-432)||(34120566-34120620)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 6e-58; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 660 - 865
Target Start/End: Complemental strand, 11567916 - 11567721
Alignment:
Q  660 agagaaattcttgcatgcaaacgcacctaacacacaaggttttacaaacaaccactaataacttgacacgtcatttatttatgttnnnnnnnnnnnnnnn 759  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||||                   
T  11567916 agagaaattcttgcatgcaaacacacctaacacataaggttttacaaacaactactaataacttaacacctcatttatttatgttaaaatttt------- 11567824  T
Q  760 nnntttttggaaataatgaagctgtcgtgcagcatttctctctcgtgtagtggcacttccaaaccgtttcttcttcttttgttttctctatgaacttttt 859  Q
       |||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11567823 ---tttttggaaatattgaagttgtcgtgcagtatttctctctcgtgtagtggcacttccaaaccgtttcttcttcttttgttttctctatgaacttttt 11567727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 659 - 848
Target Start/End: Original strand, 11566991 - 11567176
Alignment:
Q  659 aagagaaattcttgcatgcaaacgcacctaacacacaaggttttacaaacaaccactaataacttgacacgtcatttatttatgttnnnnnnnnnnnnnn 758  Q
    |||||||||| ||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||                  
T  11566991 aagagaaatttttgcatgcaaacgtacctaacacataaggtttaacaaacaaccactaataacttgacacctcatttatttatgttaaaaaaaaaaaaaa 11567090  T
Q  759 nnnntttttggaaataatgaagctgtc-gtgcagcatttctctctcgtgtagtggcacttccaaacc-gtttcttcttcttttgttttctct 848  Q
           ||||||||| ||||| |||| |||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  11567091 a------ttggaaatattgaagttgtcagtgcagcatttccctctcgtgtagtggcacttccaaaccatttttttcttcttttgttttctct 11567176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 389 - 489
Target Start/End: Complemental strand, 6054470 - 6054370
Alignment:
Q  389 atttatttacaaaactcgactaaaatacatataaactaactactttaactctaagatgaccctcaaagtggactgaaaacccgatatgatttcttgtcat 488  Q
    |||| |||||||||| ||||||||||||| ||||| | |||||||||||||||| |||||  | ||||| ||||||||| || |||||||||||||||||    
T  6054470 atttctttacaaaacacgactaaaatacacataaattgactactttaactctaaaatgacgttaaaagtagactgaaaatcctatatgatttcttgtcat 6054371  T
Q  489 c 489  Q
    |    
T  6054370 c 6054370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 661 - 735
Target Start/End: Original strand, 35298660 - 35298734
Alignment:
Q  661 gagaaattcttgcatgcaaacgcacctaacacacaaggttttacaaacaaccactaataacttgacacgtcattt 735  Q
    |||||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||| || |||| ||||||    
T  35298660 gagaaattattgcatgcaaacacacctaacacataagattttacaaacaaccactaataatttaacacctcattt 35298734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 327 - 435
Target Start/End: Complemental strand, 18440624 - 18440516
Alignment:
Q  327 gggtggatttccatggttttaaggctatttccctacttttgtcgccatataacttttgaacaatttatttacaaaactcgactaaaatacatataaacta 426  Q
    ||||||||||||||||||| |||| | |||| || ||||| ||    ||| | |||||||  |||| |||||||||||||||||||||||||||||  ||    
T  18440624 gggtggatttccatggtttcaaggatttttctcttcttttatctttctatgatttttgaatgatttctttacaaaactcgactaaaatacatataagtta 18440525  T
Q  427 actacttta 435  Q
    |||| ||||    
T  18440524 actaattta 18440516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 394 - 490
Target Start/End: Complemental strand, 49683459 - 49683363
Alignment:
Q  394 tttacaaaactcgactaaaatacatataaactaactactttaactctaagatgaccctcaaagtggactgaaaacccgatatgatttcttgtcatca 490  Q
    |||||||||||| ||||||||||| |||||||  |||||| |||||||| |||||  | |||| ||||| ||||||  ||| |||||| ||||||||    
T  49683459 tttacaaaactctactaaaatacaaataaacttgctacttgaactctaaaatgactttaaaaggggactaaaaaccatataagatttcctgtcatca 49683363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 9e-57; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 671 - 865
Target Start/End: Original strand, 7959220 - 7959414
Alignment:
Q  671 tgcatgcaaacgcacctaacacacaaggttttacaaacaaccactaataacttgacacgtcatttatttatgttnnnnnnnnnnnnnnnnnntttttgga 770  Q
    ||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| |||||||||| ||||                   |||||||    
T  7959220 tgcatgcaaacgcacctaacacatacggttttacaaacaactactaataacttgacacctcatttatttttgttaaaaaaatagaaaaaaaaattttgga 7959319  T
Q  771 aataatgaagctgtcgtgcagcatttctctctcgtgtagtggcacttccaaaccgtttcttcttcttttgttttctctatgaactttttctacat 865  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7959320 aatattgaagctgtcgtgcagcatttctctctcgtgtagtggcacttccaaaccgtttcttcttcttttgttttctctatgaactttttctacat 7959414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 658 - 848
Target Start/End: Complemental strand, 7960144 - 7959953
Alignment:
Q  658 gaagagaaattcttgcatgcaaacgcacctaacacacaaggttttacaaacaaccactaataacttgacacgtcatttatttatgttnnnnnnnnnnnnn 757  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||                 
T  7960144 gaagagaaattcttgtatgcaaacgcacctaacacataaggttttacaaacaaccactaataacttgacacctcatttatttattttaaaaaaataaaat 7960045  T
Q  758 nnnnntttttggaaataatgaagctgtcgtgcagcatttctctctcgtgtagtggcacttccaaacc-gtttcttcttcttttgttttctct 848  Q
           |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  7960044 aaaaaaatttgaaaatattgaagctgtcgtgcagcatttctctctcgtgtagtggcacttccaaaccatttttttcttcttttgttttctct 7959953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 328 - 490
Target Start/End: Complemental strand, 22241245 - 22241083
Alignment:
Q  328 ggtggatttccatggttttaaggctatttccctacttttgtcgccatataacttttgaacaatttatttacaaaactcgactaaaatacatataaactaa 427  Q
    |||||||||||||||||| ||||||||||| ||  |||||||    | | |||||||||  |||||||||||||||| |||||||||||| ||||||||     
T  22241245 ggtggatttccatggtttcaaggctatttcacttgttttgtcattttttgacttttgaatgatttatttacaaaacttgactaaaatacagataaactac 22241146  T
Q  428 ctactttaactctaagatgaccctcaaagtggactgaaaacccgatatgatttcttgtcatca 490  Q
    ||||||||||||||  ||||| || |||||||| ||||||||| |||| ||||  ||||||||    
T  22241145 ctactttaactctacaatgactctaaaagtggaatgaaaacccaatatcattttatgtcatca 22241083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 401 - 490
Target Start/End: Original strand, 3092715 - 3092803
Alignment:
Q  401 aactcgactaaaatacatataaactaactactttaactctaagatgaccctcaaagtggactgaaaacccgatatgatttcttgtcatca 490  Q
    ||||||||||||| |||| |||||||| ||||||| |||||| | ||| || |||||| || ||||| || |||||||||||||||||||    
T  3092715 aactcgactaaaacacatgtaaactaattactttatctctaaaacgactctaaaagtgcac-gaaaaacctatatgatttcttgtcatca 3092803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 2e-54; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 661 - 865
Target Start/End: Complemental strand, 5302056 - 5301858
Alignment:
Q  661 gagaaattcttgcatgcaaacgcacctaacacacaaggttttacaaacaaccactaataacttgacacgtcatttatttatgttnnnnnnnnnnnnnnnn 760  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||                    
T  5302056 gagaaattcttgcatgcaaacacacctaacacataaggttttacaaacaaccactaataacttgacacctcatttatttatgttaaaaaaaataaaaaa- 5301958  T
Q  761 nntttttggaaataatgaagctgtcgtgcagcatttctctctcgtgtagtggcacttccaaaccgtttcttcttcttttgttttctctatgaactttttc 860  Q
         ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  5301957 -----ttggaaatattgaagctgtggtgcagcatttctctctcgtgtagtggcacttccaaaccgtttcttcttcttttgttttctctatgatttttttc 5301863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 763 - 848
Target Start/End: Original strand, 5289417 - 5289503
Alignment:
Q  763 tttttggaaataatgaagctgtcgtgcagcatttctctctcgtgtagtggcacttccaaacc-gtttcttcttcttttgttttctct 848  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||  ||| |||||||||||||||||||    
T  5289417 tttttagaaatattgaagctgtcgtgcagcatttctctctcgtgtagtgccactttcaaaccatttttttcttcttttgttttctct 5289503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 661 - 735
Target Start/End: Complemental strand, 28991721 - 28991647
Alignment:
Q  661 gagaaattcttgcatgcaaacgcacctaacacacaaggttttacaaacaaccactaataacttgacacgtcattt 735  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| || |||| ||||||    
T  28991721 gagaaattcttgcatgcaaacgcaccgaacacataaggttttacaaacaaccactaataagttaacacctcattt 28991647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 695 - 741
Target Start/End: Complemental strand, 24894604 - 24894558
Alignment:
Q  695 aaggttttacaaacaaccactaataacttgacacgtcatttatttat 741  Q
    |||||||||||||||| |||| | |||||||||| ||||||||||||    
T  24894604 aaggttttacaaacaagcactgacaacttgacacctcatttatttat 24894558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 4e-28; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 659 - 735
Target Start/End: Original strand, 37581053 - 37581129
Alignment:
Q  659 aagagaaattcttgcatgcaaacgcacctaacacacaaggttttacaaacaaccactaataacttgacacgtcattt 735  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||    
T  37581053 aagagaaattcttgcatgcaaacgcacctaacacataagattttacaaacaaccactaataacttgacacctcattt 37581129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 659 - 735
Target Start/End: Complemental strand, 37581680 - 37581604
Alignment:
Q  659 aagagaaattcttgcatgcaaacgcacctaacacacaaggttttacaaacaaccactaataacttgacacgtcattt 735  Q
    ||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||| ||||||    
T  37581680 aagagaaattcttgcatgcaaacacacctaacacataagattttacaaacaaccactaataacttgacacctcattt 37581604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 661 - 727
Target Start/End: Original strand, 32367294 - 32367360
Alignment:
Q  661 gagaaattcttgcatgcaaacgcacctaacacacaaggttttacaaacaaccactaataacttgaca 727  Q
    |||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  32367294 gagaaattattgcatgcaaacgcacctaacatataaggttttacaaacaaccactaataacttgaca 32367360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 671 - 727
Target Start/End: Complemental strand, 32369648 - 32369591
Alignment:
Q  671 tgcatgcaaacgcacctaacacacaa-ggttttacaaacaaccactaataacttgaca 727  Q
    ||||||||||||||||||||||| || ||||||| ||||||| |||||||||||||||    
T  32369648 tgcatgcaaacgcacctaacacataagggttttataaacaacaactaataacttgaca 32369591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 385 - 448
Target Start/End: Original strand, 33028221 - 33028284
Alignment:
Q  385 aacaatttatttacaaaactcgactaaaatacatataaactaactactttaactctaagatgac 448  Q
    ||||||| ||||||||||||| ||||| |||||| ||||||| ||||||||| ||||| |||||    
T  33028221 aacaattcatttacaaaactcaactaacatacatttaaactacctactttaattctaaaatgac 33028284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 26809638 - 26809702
Alignment:
Q  148 acattctctaccttcccatatggcttgattggttctccatttgcaaggccagctagcattgatgt 212  Q
    ||||| || ||||||||||  |||||||||| | ||||||| ||||||||| |||||||||||||    
T  26809638 acattttccaccttcccatgaggcttgattgatgctccattggcaaggccaactagcattgatgt 26809702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 660 - 728
Target Start/End: Original strand, 17252911 - 17252979
Alignment:
Q  660 agagaaattcttgcatgcaaacgcacctaacacacaaggttttacaaacaaccactaataacttgacac 728  Q
    ||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  17252911 agagaaatttttgcatgcaaacgcacctaacacataaggttttacgaacaaccactaataacttgacac 17252979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 286 - 470
Target Start/End: Complemental strand, 28217481 - 28217303
Alignment:
Q  286 cttgtgaaaagaatagcatagtcacaaagttgtctagttcagggtggatttccatggttttaaggctatttccctacttttgtcgccatataacttttga 385  Q
    ||||| ||||| ||| || | ||||| |||||||| ||||| | |||||||||| ||||| || ||||||||||||||||||||    ||| ||||||||    
T  28217481 cttgtaaaaagcataacacaatcacatagttgtcttgttcaag-tggatttccaaggtttcaaagctatttccctacttttgtcattttattacttttga 28217383  T
Q  386 acaatttatttacaaaactcgactaaaatacatataaactaactactttaactctaagatgaccctcaaagtggactgaaaaccc 470  Q
    || |||| ||||||| | || ||||||||| | || ||||||| |||||||||||    ||||  | ||||||||||||||||||    
T  28217382 actatttctttacaataatcaactaaaataaacat-aactaaccactttaactct----tgactttaaaagtggactgaaaaccc 28217303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 329 - 448
Target Start/End: Original strand, 26930 - 27049
Alignment:
Q  329 gtggatttccatggttttaaggctatttccctacttttgtcgccatataacttttgaacaatttatttacaaaactcgactaaaatacatataaactaac 428  Q
    |||||||||||| |||| ||| |||||||  | ||||||||     || |||||||||| |||| |||| ||||||| ||||||||||| ||||||||      
T  26930 gtggatttccattgtttcaagactatttcttttcttttgtcctttcatgacttttgaacgatttctttataaaactcaactaaaatacacataaactaca 27029  T
Q  429 tactttaactctaagatgac 448  Q
    |||||| ||||||| |||||    
T  27030 tactttcactctaaaatgac 27049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 394 - 447
Target Start/End: Complemental strand, 24695364 - 24695311
Alignment:
Q  394 tttacaaaactcgactaaaatacatataaactaactactttaactctaagatga 447  Q
    |||||||||||||| ||||||||  |||||||||||| ||| ||||||| ||||    
T  24695364 tttacaaaactcgattaaaatacgcataaactaactaattttactctaaaatga 24695311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 378 - 432
Target Start/End: Original strand, 34120566 - 34120620
Alignment:
Q  378 acttttgaacaatttatttacaaaactcgactaaaatacatataaactaactact 432  Q
    |||||||||| |||| |||||||||||| ||||||| ||| ||||| ||||||||    
T  34120566 acttttgaactatttctttacaaaactcaactaaaacacacataaattaactact 34120620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University