View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2986-Insertion-8 (Length: 877)
Name: NF2986-Insertion-8
Description: NF2986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2986-Insertion-8 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] chr2 (8 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 749; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 749; E-Value: 0
Query Start/End: Original strand, 8 - 877
Target Start/End: Complemental strand, 34690524 - 34689653
Alignment:
| Q |
8 |
gtcccaattctgacttacaacaatgacctgagctcatcaaatccttaatcctaattctagttggctaccaaattattctccctcatcaataacagcacct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34690524 |
gtcccaattctgacttacaacaatgacctgagctcatcaaatccttaatcctaattctagttggctaccaaattattctccctcatcaataacagcacct |
34690425 |
T |
|
| Q |
108 |
tgctcgagtggtcttggtgaaaaatatgggtcttatgacttgaaatatgaggatatgtcatnnnnnnnnttgtagaacaaacttactcaaacagggtctt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34690424 |
tgctcgagtggtcttggtgaaaaatatgggtcttatgacttgaaatatgaggatatgtcataaaaaaaattgtagaacaaacttactcaaacagggtctt |
34690325 |
T |
|
| Q |
208 |
atgacttcattcatgacttaaaatgtagtgggaactttgtaagtccatagggaattaccgtgttatggattcgatttaaagatttgaacacaagaaccaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34690324 |
atgacttcattcatgacttaaaatgtagtgggaactttgtaagtccatagggaattaccgtgttatggattcgatttaaagatttgaacacaagaaccaa |
34690225 |
T |
|
| Q |
308 |
tttaattcgtaatgccttattgtggtgtacttttataggctcaatgtttatatttacttatggaacttctttgttgcagtgcggttagcatgtacgagga |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34690224 |
tttaattcgtaatgccttattgtggtgtacttttataggctcaatgtttatatttacttatggaacttctttgttgcagtgcggttagcatgtgcgagga |
34690125 |
T |
|
| Q |
408 |
ccgacactaccttgccatccttaaccaaccattcagctgtatgcttatatatcaggaatacttgttgggcgtgatcactgaatcaggaattagcttttaa |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34690124 |
ccgacactaccttgccatccttaaccaaccattcagctgtatgcttatatatcaggaatacttgttgggcatgatcactgaatcaggaattagcttttaa |
34690025 |
T |
|
| Q |
508 |
acaaatatttcaatttgatctaagtcattcaaaaatagcgacatatggcaacaacaactatccaaatctatgttattagtacccccaagataatcaattg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34690024 |
acaaatatttcaatttgatctaagtcattcaaaaatagcgacatatggcaacaacaactatccaaatctatgttattagtacccccaagataatcaattg |
34689925 |
T |
|
| Q |
608 |
aaattttttgtaccttatgtatatagccaaatg--acaccagattccccatccaccttttgtccacaatgtatacaaatgcctccaaatgatccaggatg |
705 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34689924 |
aaattttttgtaccttatgtatatagccaaatgacacaccagattccccatccaccttttgtccacaatgtatacaaatgcctccaaatgatccaggatg |
34689825 |
T |
|
| Q |
706 |
catacatccatctacattcaaagatgatactccaacaattaagtattaatatnnnnnnnnnnnnnnnnnnnnnnnnttacaacatttttaagacagagtg |
805 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34689824 |
catacatccatctacattcacagatgatactccaacaattaagtattaatatagagagagtgagagaaagagagagttacaacatttttaagacagagtg |
34689725 |
T |
|
| Q |
806 |
acaaagttgtatgtgattcataatcatattttcacaaacatttggaagagattttgcgtaatctaggagcct |
877 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34689724 |
acaaagttgtatgtgattcataatcatattttcacaaacatttggaagagattttgcgtaatctaagagcct |
34689653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 339 - 523
Target Start/End: Complemental strand, 16728652 - 16728462
Alignment:
| Q |
339 |
tttataggctcaatgtttatattta----cttatggaacttctttgttgcagtgcggttagcatgtacgaggaccgacactacct--tgccatccttaac |
432 |
Q |
| |
|
||||||| ||| ||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16728652 |
tttatagactcgatgtttatatttaattacttatggaatttctttgttgtcgtgcggttagcatgtacgaggaccgacactacctattgccatccttaac |
16728553 |
T |
|
| Q |
433 |
caaccattcagctgtatgcttatatatcaggaatacttgttgggcgtgatcactgaatcaggaattagcttttaaacaaatatttcaattt |
523 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16728552 |
caaccatttagctgtatgcttatatatcaggaatacttgttgggcatgatcactgaatcaggaattagctcttaaacaaatatttcaattt |
16728462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 225 - 314
Target Start/End: Complemental strand, 16728740 - 16728651
Alignment:
| Q |
225 |
ttaaaatgtagtgggaactttgtaagtccatagggaattaccgtgttatggattcgatttaaagatttgaacacaagaaccaatttaatt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16728740 |
ttaaaatgtagtgggaactttgtaagtccatagggaattaccgtgttatggattcgatttaaagatttgaacacaagaacaaatttaatt |
16728651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 265 - 877
Target Start/End: Complemental strand, 26988214 - 26987604
Alignment:
| Q |
265 |
ccgtgttatggattcgatttaaagatttgaacacaagaaccaatttaattcgtaatgccttattgtggtgtacttttataggctcaatgtttatatttac |
364 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26988214 |
ccgtgttatggattcgattcaaagatttgaacacaagaacaaatttaatttgtaatgccttattgtggtgtacttttataggctcaatgtttatatttac |
26988115 |
T |
|
| Q |
365 |
ttatggaacttctttgttgcagtgcggttagcatgtacgaggaccgacactacc--ttgccatccttaaccaaccattcagctgtatgcttatatatcag |
462 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26988114 |
ttatggaacttctttgttgcaatgcggttagcatgtacgaggaccgacactacctattgccatccttaaccaaccattcagctgtatgcttatatatcag |
26988015 |
T |
|
| Q |
463 |
gaatacttgttgggcgtgatcactgaatcaggaattagcttttaaacaaatatttcaatttgatctaagtcattcaaaaatagcgacatatggcaacaac |
562 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| || | |||||||||||| |||||||||| |
|
|
| T |
26988014 |
gaatacttgttgggcatgatcactgaatcaggaatcagcttttaaacaaatatttcaatttgatc-aatt------gaaatagcgacatgtggcaacaac |
26987922 |
T |
|
| Q |
563 |
aactatccaaatctatgttattagtacccc-caagataatcaattgaaattttttgtaccttatgtatatagccaaatg--acaccagattccccatcca |
659 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| | |||| |||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
26987921 |
aactatccaaatctatgttattagtaccccgcaagataatcattagaaaaaaattgtaccttatgtatatacccaaatgacacaccagattccccatcca |
26987822 |
T |
|
| Q |
660 |
ccttttgtccacaatgtatacaaatgcctccaaatgatccaggatgcatacatccatctacattcaaagatgatactccaacaattaagtattaatatnn |
759 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26987821 |
ccttttgtccacaatgtatacaaatgcctccaaatgatccaggatgcatacatccatctacattcacagatgatactccaacaattaagtattaatatag |
26987722 |
T |
|
| Q |
760 |
nnnnnnnnnnnnnnnnnnnnnnttacaacatttttaagacagagtgacaaagttgtatgtgattcataatcatattttcacaaacatttggaagagattt |
859 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26987721 |
agagagtgagagaaagtgagagttacaacatttttaagacagagtgacaaagttgtatgtgattcataatcatattttcacaaatatttggaagagattt |
26987622 |
T |
|
| Q |
860 |
tgcgtaatctaggagcct |
877 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
26987621 |
tgcgtaatctaagagcct |
26987604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 236
Target Start/End: Complemental strand, 26988448 - 26988220
Alignment:
| Q |
8 |
gtcccaattctgacttacaacaatgacctgagctcatcaaatccttaatcctaattctagttggctaccaaattattctccctcatcaataacagcacct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26988448 |
gtcccaattctgacttacaacaatgacctgagctcatcaaatccttaatcctaattctagttggctaccaaattattctccctcatcaataacagcacct |
26988349 |
T |
|
| Q |
108 |
tgctcgagtggtcttggtgaaaaatatgggtcttatgacttgaaatatgaggatatgtcatnnnnnnnnttgtagaacaaacttactcaaacagggtctt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26988348 |
tgctcgagtggtcttggtgaaaaatatgggtcttatgacttgaaatatgaggatatgtcataaaaaaaattgtagaacaaacttactcaaacagggtctt |
26988249 |
T |
|
| Q |
208 |
atgacttcattcatgacttaaaatgtagt |
236 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
|
|
| T |
26988248 |
atgacttcattcatgacttaaaatttagt |
26988220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 464 - 722
Target Start/End: Complemental strand, 27027493 - 27027235
Alignment:
| Q |
464 |
aatacttgttgggcgtgatcactgaatcaggaattagcttttaaacaaatatttcaatttgatctaa--gtcattcaaaaatagcgacatatggcaacaa |
561 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||||||| | || |||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
27027493 |
aatacttgttgggcacggtcactgaatcaggaattagcttttaaacaaata-----acttaatctaacagtcattcaaaaatagcgacatgtggcaacaa |
27027399 |
T |
|
| Q |
562 |
caactatccaaatctatgttattagtacccc-caagataatcaattgaaattttttgtaccttatgtatatagccaaatgacac--cagattccccatcc |
658 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| | |||| |||||||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
27027398 |
caactatccaaatctatgttattagtaccccgcaagataatcattagaaaaaaattgtaccttatgtatatacccaaatgacacaccagattccgcatcc |
27027299 |
T |
|
| Q |
659 |
accttttgtccacaatgtatacaaatgcctccaaatgatccaggatgcatacatccatctacat |
722 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27027298 |
accttttgcccacaatgtatacaaatgcctccaaatgatccaggatgcatacatccatctacat |
27027235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 464 - 751
Target Start/End: Original strand, 27077260 - 27077556
Alignment:
| Q |
464 |
aatacttgttgggcgtgatcactgaatcaggaattagctttta-aacaaatatttcaatttgatctaa--gtcattcaaaaata---gcgacatatggca |
557 |
Q |
| |
|
|||||||||||||| ||| ||||||| ||||||||||||||| |||||||||||||| ||||||||| ||||||| |||||| ||||||| | ||| |
|
|
| T |
27077260 |
aatacttgttgggcatgaccactgaagcaggaattagcttttttaacaaatatttcaacttgatctaacagtcattcgaaaataatagcgacatgtagca |
27077359 |
T |
|
| Q |
558 |
acaacaactatccaaatctatgttattagtaccccc-aagataatcaattgaaattttttgtaccttatgtatatagccaaatgacac--cagattcccc |
654 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| | |||| |||||||||| | ||||| ||||||||||| |||||||||| |
|
|
| T |
27077360 |
acaacaactatccaaatctatgttattagtaccccgtaagataatcattagaaacaatttgtaccttgcgaatatacccaaatgacacaccagattcccc |
27077459 |
T |
|
| Q |
655 |
atccaccttttgtccacaatgtatacaaatgcctccaaatgatccaggatgcatacatccatctacattcaaagatgatactccaacaattaagtat |
751 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| |||||| ||| |||||||||||||| |
|
|
| T |
27077460 |
atccaccttttgcccacaatgtatacaaatgcctccaaatgatccagggtgcatgcatacatctacattcacagatgacactgcaacaattaagtat |
27077556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 782 - 870
Target Start/End: Complemental strand, 27027201 - 27027114
Alignment:
| Q |
782 |
ttacaacatttttaagacagagtgacaaagttgtatgtgattcataatcatattttcacaaacatttggaagagattttgcgtaatcta |
870 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| ||| ||||||||| ||||||| |
|
|
| T |
27027201 |
ttacaacattttaaagacagagtgacaaagttgtatgttattcatattcatattttcacaaatattt-gaaaagattttgcataatcta |
27027114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 800 - 877
Target Start/End: Original strand, 27077617 - 27077693
Alignment:
| Q |
800 |
agagtgacaaagttgtatgtgattcataatcatattttcacaaacatttggaagagattttgcgtaatctaggagcct |
877 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||| ||| ||||||||| |||| || |||||| |
|
|
| T |
27077617 |
agagtgacaaaattgtatgtgattcataatcatattttcataaacattt-gaaaagattttgcataatgtaagagcct |
27077693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 322 - 390
Target Start/End: Original strand, 27077104 - 27077172
Alignment:
| Q |
322 |
ccttattgtggtgtacttttataggctcaatgtttatatttacttatggaacttctttgttgcagtgcg |
390 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27077104 |
ccttattgtgacatacttctataggctaaatgtttatatttacttatggaacttctttgttacagtgcg |
27077172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 237 - 271
Target Start/End: Original strand, 27076878 - 27076912
Alignment:
| Q |
237 |
gggaactttgtaagtccatagggaattaccgtgtt |
271 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
27076878 |
gggaactttgcaagtccatagggaattaccgtgtt |
27076912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 5e-80; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 481 - 754
Target Start/End: Complemental strand, 30230376 - 30230099
Alignment:
| Q |
481 |
atcactgaatcaggaattagcttttaaacaaatatttcaatttgatctaag--tcattcaaaaatagcgacatatggcaacaacaactatccaaatctat |
578 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| ||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
30230376 |
atcactgaatcaggaattagctttttaacaaatatttcaacttgatctaacattcattcgaaaatagcgacatgcggaaacaacaactatccaaatctat |
30230277 |
T |
|
| Q |
579 |
gttattagtacccccaagataatcaattgaaattttttgtaccttatgtatatagccaaatgacac--cagattccccatccaccttttgtccacaatgt |
676 |
Q |
| |
|
||||||||| |||||||| || || | ||| ||| |||||| |||||||| ||||| ||||| ||||||||||||| |||||||| ||||||||| |
|
|
| T |
30230276 |
attattagtatccccaagaaaaacattacaaacaatttttaccttgtgtatatacccaaacgacacaccagattccccatcaaccttttgcccacaatgt |
30230177 |
T |
|
| Q |
677 |
atacaaatgcctccaaatgatccaggatgcatacatccatctacattcaaagatgatactccaacaattaagtattaa |
754 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
30230176 |
atacaaatgcctccaaatgatccaggatgcgtacatccatctacattcacagatgatactgcaacaattaagtattaa |
30230099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 464 - 757
Target Start/End: Complemental strand, 30233108 - 30232808
Alignment:
| Q |
464 |
aatacttgttgggcgtgatcactgaatcaggaattagcttttaaacaaatatttcaatttgatctaag--tcattcaaaaatagcgacatatggcaacaa |
561 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||| || ||||||||||| ||||| |||| ||||| ||||| ||||||| |||||||| |
|
|
| T |
30233108 |
aatacttgttgggcatgatcactgaatcataaattagctttttaataaatatttcaacttgatttaagagtcattagaaaattgcgacatgcggcaacaa |
30233009 |
T |
|
| Q |
562 |
caactatccaaatctatgttattagtacccccaagataatcaattgaaattttttgtaccttatgtatatagccaaatgacac--cagattccccatcca |
659 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||| | |||| |||||||||| ||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
30233008 |
caactatccaaatctaaattattagtatccccaagataatcattagaaacaatttgtaccttgtgtatatagccaaataacacaccagattccccatcca |
30232909 |
T |
|
| Q |
660 |
ccttttgtccacaatgtatacaaatgcctccaaatgatccaggatg---catacatccatctacattcaaagatgatactccaacaattaagtattaata |
756 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| ||| |||||||| ||||| |
|
|
| T |
30232908 |
ccttttgcccacaatgtatacaaatgcctccaaatgatccaggatgcatcatacatccatctacattcacagttgatactgcaatcattaagtaataata |
30232809 |
T |
|
| Q |
757 |
t |
757 |
Q |
| |
|
| |
|
|
| T |
30232808 |
t |
30232808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 782 - 877
Target Start/End: Complemental strand, 30232785 - 30232691
Alignment:
| Q |
782 |
ttacaacatttttaagacagagtgacaaagttgtatgtgattcataatcatattttcacaaacatttggaagagattttgcgtaatctaggagcct |
877 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||| ||||||| |||||| |
|
|
| T |
30232785 |
ttacaacatttttaagacagagtgacaaagttgtatgtgattcataataatattttcacaaacattt-gaaaagattttgcataatctaagagcct |
30232691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 268 - 362
Target Start/End: Complemental strand, 30230570 - 30230476
Alignment:
| Q |
268 |
tgttatggattcgatttaaagatttgaacacaagaaccaatttaattcgtaatgccttattgtggtgtacttttataggctcaatgtttatattt |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
30230570 |
tgttatggattcgatttaaagatttgaacacaagaccaaatttaatttgtaatgccttattctggtgtacttcaataggctcaatgtttatattt |
30230476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 800 - 876
Target Start/End: Complemental strand, 30230055 - 30229980
Alignment:
| Q |
800 |
agagtgacaaagttgtatgtgattcataatcatattttcacaaacatttggaagagattttgcgtaatctaggagcc |
876 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||| ||||||| ||||| |
|
|
| T |
30230055 |
agagtgacaaagttgtatgtgattcataatcatattttcacaaaaattt-caaaagattttgcataatctaagagcc |
30229980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 354 - 405
Target Start/End: Complemental strand, 30233322 - 30233273
Alignment:
| Q |
354 |
tttatatttacttatggaacttctttgttgcagtgcggttagcatgtacgag |
405 |
Q |
| |
|
|||||||||||||| ||||||| | |||||||||||||||||||||||||| |
|
|
| T |
30233322 |
tttatatttacttaaggaacttgt--gttgcagtgcggttagcatgtacgag |
30233273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 618 - 725
Target Start/End: Original strand, 50174676 - 50174785
Alignment:
| Q |
618 |
taccttatgtatatagccaaatgacac--cagattccccatccaccttttgtccacaatgtatacaaatgcctccaaatgatccaggatgcatacatcca |
715 |
Q |
| |
|
|||||| ||||| || ||||||| ||| ||||||||||||||| |||||| || ||| ||||||| || |||||||||| |||||||| ||||| || |
|
|
| T |
50174676 |
taccttgtgtatgtacccaaatgtcacgccagattccccatccaacttttgcccgcaacgtatacacatctctccaaatgaaccaggatgtgtacataca |
50174775 |
T |
|
| Q |
716 |
tctacattca |
725 |
Q |
| |
|
||||| |||| |
|
|
| T |
50174776 |
tctaccttca |
50174785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3400 times since January 2019
Visitors: 1238