View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2986R-Insertion-1 (Length: 961)
Name: NF2986R-Insertion-1
Description: NF2986R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2986R-Insertion-1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 9 - 522
Target Start/End: Original strand, 8358070 - 8358588
Alignment:
| Q |
9 |
agtggctgcaccaagtattgtaggtggtttagttggtttgttcataaagagaataaaaaatagaactaattgggaaagactatgtgaacaacttgatgct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8358070 |
agtggctgcaccaagtattgtaggtggtttagttggtttgttcataaagagaataaaaaatagaactaattgcgaaagactatgtgaacaacttgatgct |
8358169 |
T |
|
| Q |
109 |
gctgcgaaaggggtttttatattgataaatgatttggatactatgagtaggatggtgaagaggttgaatgatgaggtggaacatagaaaaatggttgctc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8358170 |
gctgcgaaaggggtttttatattgataaatgatttggatactatgagtaggatggtgaagaggttgaatgatgaggtggaacatagaaaaatggttgctc |
8358269 |
T |
|
| Q |
209 |
aagtttgtgtgaagaatgttggtagtaaatgtgaaatattgaagaggtttatgagtgaatttagtgatcaagagtctagctttttggatgagttggaaga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
8358270 |
aagtttgtgtgaagaatgttggtagtaaatgtgaaatattgaagaggtttatgagtgaatttagtgatcaagagtcaagatttttggatgagttggaaga |
8358369 |
T |
|
| Q |
309 |
acttgaagaacatgtttacttgtgctttctcaccgttaacaaatctaggagacttgttctgcaacaaattacagagagatcacaacatta-----attat |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8358370 |
acttgaagaacatgtttacttgtgctttctcaccgttaacaaatctaggagacttgttctgcaacaaattacagagagatcacaacattaattatattat |
8358469 |
T |
|
| Q |
404 |
attatattaatttagaaaagaaaatatgagagacatattttaaactcaattatattgcttacgagtaatattatagaggaaataaataattcacgggcgt |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8358470 |
attatattaatttagaaaagaaaatatgagagacatattttaaactcaattatattgcttacaagtaatattatagaggaaataaataattcacggacgt |
8358569 |
T |
|
| Q |
504 |
gattttcacacgttgcttg |
522 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
8358570 |
gattttcacacgttgcttg |
8358588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 593 - 846
Target Start/End: Original strand, 8358669 - 8358922
Alignment:
| Q |
593 |
tctgtaaattcactgattcaccttatctctattattatctgcttgtaatgctttgatagtagatgaataaatcaattttaggtttttgaaacatgtacaa |
692 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8358669 |
tctgtaaattcactcattcaccttatctctattattatctgcttgtaatgctttgatagtagatgaataaatcaattttaggtttttgaaacatgtacaa |
8358768 |
T |
|
| Q |
693 |
gaaaataacttgaaacaattttaggtgcagtgaatatcattttcttttctattatcaccaattctatgctacatcatttgaaaattacaaaactgagaat |
792 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8358769 |
gaaaataacttgaaacaattttagatgcagtgaatatcattttcttttctattatcaccaattctatgctacatcatttgaaaattacaaaactgagaat |
8358868 |
T |
|
| Q |
793 |
ctctttcgcaaatttatgtattccctgatcatcaatcggggtaaaatacagtgc |
846 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8358869 |
ctctttcgcaaatttatgtattccctgatcatcaattggggtaaaatacagtgc |
8358922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 891 - 949
Target Start/End: Original strand, 8358960 - 8359018
Alignment:
| Q |
891 |
agatgataccttattacaaaatttgtcgtcttgttctatgggaatgtttttcagaagag |
949 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
8358960 |
agatgataccttattacaaaatttgtcgtcttgttctatggaaatgttttcaagaagag |
8359018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 9 - 385
Target Start/End: Complemental strand, 28593515 - 28593124
Alignment:
| Q |
9 |
agtggctgcaccaagtattgtaggtggtttagttggtttgttcataaagagaataaaaaatag---------aa---ctaattgggaaagactatgtgaa |
96 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||||| ||| |||| ||| || || |||| ||||||||||||||| |
|
|
| T |
28593515 |
agtggctgcaccaagtattgtaggtagtttggttggtttgttcataaagaaaatcaaaattaggttaagaagaagttcttattgtgaaagactatgtgaa |
28593416 |
T |
|
| Q |
97 |
caacttgatgctgctgcgaaaggggtttttatattgataaatgatttggatactatgagtaggatggtgaagaggttgaatgatgaggtggaacatagaa |
196 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |
|
|
| T |
28593415 |
caacttgatgctgctgcaaaaggggtttttatattgataaatgatttggatactatgagtaggatggtgaagaggttgaatgatgaagtggagcatagga |
28593316 |
T |
|
| Q |
197 |
aaatggttgctcaagtttgtgtgaagaat---gttggtagtaaatgtgaaatattgaagaggtttatgagtgaatttagtgatcaagagtctagcttttt |
293 |
Q |
| |
|
|||| ||||| | ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| | | |||||||||||||||||||| |
|
|
| T |
28593315 |
aaatttttgctgatgtttgtgtgaagaataatgttggtagtaaatgtgaaatattgaagagggttatgagtgaatatcgagatcaagagtctagcttttt |
28593216 |
T |
|
| Q |
294 |
ggatgagttggaagaacttgaagaacatgtttacttgtgctttctcaccgttaacaaatctaggagacttgttctgcaacaaattacagaga |
385 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||| ||| | || |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28593215 |
ggatcagttggaagagcttgaagaacatgtttacttgtgctttcttaccatcaataaatctaggagacttgttatgcaacaaattacagaga |
28593124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 53447714 - 53447805
Alignment:
| Q |
82 |
gaaagactatgtgaacaacttgatgctgctgcgaaaggggtttttatattgataaatgatttggatactatgagtaggatggtgaagaggtt |
173 |
Q |
| |
|
|||| ||||| ||||||| |||||| |||||| |||||||||| |||| ||||||||||||||||||||||||| | ||||| |||||||| |
|
|
| T |
53447714 |
gaaaaactatatgaacaaattgatgttgctgcaaaaggggtttatatagtgataaatgatttggatactatgagccgtatggttaagaggtt |
53447805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University