View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2986R-Insertion-10 (Length: 75)

Name: NF2986R-Insertion-10
Description: NF2986R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2986R-Insertion-10
NF2986R-Insertion-10
[»] chr2 (3 HSPs)
chr2 (8-75)||(44225229-44225296)
chr2 (8-75)||(44236043-44236110)
chr2 (8-75)||(44213068-44213135)
[»] chr4 (2 HSPs)
chr4 (10-75)||(2884634-2884699)
chr4 (10-75)||(2899861-2899926)


Alignment Details
Target: chr2 (Bit Score: 64; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 44225229 - 44225296
Alignment:
Q  8 agtttcctaccaatatggaaggattgaaatgcctcagcgaattgagtaacagttacaaatctgtatgg 75  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44225229 agtttcctaccaatatggaaggattgaaacgcctcagcgaattgagtaacagttacaaatctgtatgg 44225296  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 44236043 - 44236110
Alignment:
Q  8 agtttcctaccaatatggaaggattgaaatgcctcagcgaattgagtaacagttacaaatctgtatgg 75  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44236043 agtttcctaccaatatggaaggattgaaacgcctcagcgaattgagtaacagttacaaatctgtatgg 44236110  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-17
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 44213068 - 44213135
Alignment:
Q  8 agtttcctaccaatatggaaggattgaaatgcctcagcgaattgagtaacagttacaaatctgtatgg 75  Q
    ||||||| |||||||||||| |||||||||||||| || |||||||||||||||||| ||| ||||||    
T  44213068 agtttcccaccaatatggaatgattgaaatgcctcggcaaattgagtaacagttacatatcggtatgg 44213135  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 2884699 - 2884634
Alignment:
Q  10 tttcctaccaatatggaaggattgaaatgcctcagcgaattgagtaacagttacaaatctgtatgg 75  Q
    |||||| |||| |||| | ||||||||||||||||| |||||||||||||||||||| ||||||||    
T  2884699 tttccttccaacatggtatgattgaaatgcctcagcaaattgagtaacagttacaaacctgtatgg 2884634  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 2899861 - 2899926
Alignment:
Q  10 tttcctaccaatatggaaggattgaaatgcctcagcgaattgagtaacagttacaaatctgtatgg 75  Q
    |||||| |||| |||| | ||||||||||||||||| |||||||||||||||| ||| ||||||||    
T  2899861 tttccttccaacatggtatgattgaaatgcctcagcaaattgagtaacagttaaaaacctgtatgg 2899926  T

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