View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2986R-Insertion-2 (Length: 934)

Name: NF2986R-Insertion-2
Description: NF2986R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2986R-Insertion-2
NF2986R-Insertion-2
[»] chr3 (15 HSPs)
chr3 (9-921)||(30718785-30719686)
chr3 (345-569)||(30706152-30706376)
chr3 (345-569)||(30699317-30699541)
chr3 (14-203)||(30707126-30707315)
chr3 (23-201)||(30701943-30702121)
chr3 (364-554)||(30708804-30708997)
chr3 (650-777)||(30705936-30706063)
chr3 (647-752)||(30699120-30699225)
chr3 (445-517)||(30790307-30790379)
chr3 (654-770)||(30790525-30790641)
chr3 (219-260)||(1502590-1502631)
chr3 (433-513)||(30798652-30798732)
chr3 (217-260)||(4946206-4946249)
chr3 (436-513)||(30868436-30868512)
chr3 (215-252)||(30367629-30367666)
[»] chr7 (9 HSPs)
chr7 (215-261)||(10893870-10893916)
chr7 (215-252)||(18750888-18750925)
chr7 (215-260)||(44172892-44172937)
chr7 (221-261)||(30013213-30013253)
chr7 (215-254)||(650531-650570)
chr7 (215-254)||(43160496-43160535)
chr7 (466-512)||(23081116-23081162)
chr7 (215-260)||(21238829-21238874)
chr7 (469-518)||(23057856-23057905)
[»] chr8 (3 HSPs)
chr8 (215-254)||(32691755-32691794)
chr8 (215-254)||(31681838-31681877)
chr8 (216-254)||(8917544-8917582)
[»] chr5 (2 HSPs)
chr5 (215-251)||(645344-645380)
chr5 (215-260)||(28322253-28322298)
[»] chr4 (5 HSPs)
chr4 (214-254)||(683063-683103)
chr4 (215-254)||(45615423-45615462)
chr4 (216-254)||(9988707-9988745)
chr4 (215-261)||(41989576-41989622)
chr4 (232-261)||(51939141-51939170)
[»] chr6 (2 HSPs)
chr6 (217-260)||(32125175-32125218)
chr6 (215-260)||(6284663-6284708)
[»] chr1 (1 HSPs)
chr1 (215-254)||(26462653-26462692)
[»] chr2 (1 HSPs)
chr2 (215-253)||(35198240-35198278)


Alignment Details
Target: chr3 (Bit Score: 792; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 792; E-Value: 0
Query Start/End: Original strand, 9 - 921
Target Start/End: Complemental strand, 30719686 - 30718785
Alignment:
Q  9 gaaccaagaggagctgaataaacgcttaaatgagtggaaagagaaaggtttttctgtttatggatctgtttgtgatgcatcttcttcttctcaaagagag 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30719686 gaaccaagaggagctgaataaacgcttaaatgagtggaaagagaaaggtttttctgtttatggatctgtttgtgatgcatcttcttcttctcaaagagag 30719587  T
Q  109 gagcttattcgaaatgtggcttcttctttcaatggcaaactcaacatatttgtgagtttttccttttctatatattttcttttgcatttctatataattg 208  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30719586 gagcttattcaaaatgtggcttcttctttcaatggcaaactcaacatatttgtgagtttttccttttctatatattttgttttgcatttctatataattg 30719487  T
Q  209 atgctgaatttaagaaaatgacgtaattgaatgtaatcacatgtgtttgtgtcctacattggatgtctcttcgatcagaagtgtcggtgttatgttatga 308  Q
    |||||||||||||||||||||         |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  30719486 atgctgaatttaagaaaatga---------atgtaatcacatgtgtctgtgtcctacattggatatctcttcgatcagaagtgtcggtgctatgttatga 30719396  T
Q  309 cttcagctcatatgttgatatgatgttcttgtgagtttaggtgaacaatgctggaacaaatgtgaggaagccaacaatcgagtatacggccgaagattat 408  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30719395 cttcatctcatatgttgatatgatgttcttgtgagtttaggtgaacaatgctggaacaaatgtgaggaagccaacaatcgagtatacggccgaagattat 30719296  T
Q  409 tcgaaagtgatgactactaacttggattctgcatatcatctatgccaactgacatatcctcttcttaaagaatctggaaatggaagcattgtgttcattt 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30719295 tcgaaagtgatgactactaacttggattctgcatatcatctatgccaactgacatatcctcttcttaaagaatctggaaatggaagcattgttttcattt 30719196  T
Q  509 cctctgttgggtctctgacaagcgtaggtactggaagcatctatgcagcaagtaaaggtaatttggaaatggaagcattatgttatctttaaccttttgt 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30719195 cctctgttgggtctctgacaagcgtaggtactggaagcatctatgcagcgagtaaaggtaatttggaaatggaagcattatgttatctttaaccttttgt 30719096  T
Q  609 tgaaatataatggatacaaactaaaagatttattgtgttgttttcttcagctgcaatcaatcagctgacaaaaagtcttgcttgtgaatgggcgaaagac 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30719095 tgaaatataatggatacaaactaaaagatttattgtgttgttttcttcagctgcaatcaatcagctgacaaaaagtcttgcttgtgaatgggcgaaagac 30718996  T
Q  709 aacatcaggagcaactgtgtcgcaccctggtatacaaaaacaccacttgtggaacatgtaatgctctttcacaccttcaattattcattctgtggctttg 808  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30718995 aacataaggagcaactgtgtcgcaccctggtatacaaaaacaccacttgtggaacatgtaatgctctttcacaccttcaattattcattctgtggctttg 30718896  T
Q  809 tcannnnnnnnnnnnatgaagattgtttgaatttgtaatgttcatttgatttggatgaaatgactgattggtcgttgtttaatcggaggtgtatggtatg 908  Q
    |||            ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  30718895 tca--ttttttttttatgaagattgtttgaatttgtaatgatcatttgatttgtatgaaatgactgattggtcattgtttaatcggaggtgtatggtatg 30718798  T
Q  909 gtattcttctatt 921  Q
    |||||||||||||    
T  30718797 gtattcttctatt 30718785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 345 - 569
Target Start/End: Complemental strand, 30706376 - 30706152
Alignment:
Q  345 ttaggtgaacaatgctggaacaaatgtgaggaagccaacaatcgagtatacggccgaagattattcgaaagtgatgactactaacttggattctgcatat 444  Q
    |||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||     
T  30706376 ttaggtaaacaatgctggtacaaatgtgaggaagccaacaattgagtatacagccgaagattattcaaaagtgatgactactaacttggattctgcatac 30706277  T
Q  445 catctatgccaactgacatatcctcttcttaaagaatctggaaatggaagcattgtgttcatttcctctgttgggtctctgacaagcgtaggtactggaa 544  Q
    |||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| | ||| |||||||||||||    
T  30706276 catctatgtcaactagcatatcctcttcttaaagaatctggaaatggaagcattgtgttcatttcctctgttgcatctctaataagtgtaggtactggaa 30706177  T
Q  545 gcatctatgcagcaagtaaaggtaa 569  Q
    ||||||||||||  |||||||||||    
T  30706176 gcatctatgcagtgagtaaaggtaa 30706152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 345 - 569
Target Start/End: Complemental strand, 30699541 - 30699317
Alignment:
Q  345 ttaggtgaacaatgctggaacaaatgtgaggaagccaacaatcgagtatacggccgaagattattcgaaagtgatgactactaacttggattctgcatat 444  Q
    |||||| ||||||| |||||||||||||||||| |||||||| ||||||||  | ||||||||||| ||| ||||||||| ||||||||||||||||||     
T  30699541 ttaggtaaacaatgttggaacaaatgtgaggaaaccaacaattgagtatacaacagaagattattcaaaattgatgactattaacttggattctgcatac 30699442  T
Q  445 catctatgccaactgacatatcctcttcttaaagaatctggaaatggaagcattgtgttcatttcctctgttgggtctctgacaagcgtaggtactggaa 544  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||  |||||||||  ||||||| ||||||    
T  30699441 catctatgccaactgacatatcctcttcttaaagaatctggaaatggaagcattgtattcaattcctctgttgcatctctgacacacgtaggttctggaa 30699342  T
Q  545 gcatctatgcagcaagtaaaggtaa 569  Q
      || || |||||| ||||||||||    
T  30699341 cgatatacgcagcatgtaaaggtaa 30699317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 30707315 - 30707126
Alignment:
Q  14 aagaggagctgaataaacgcttaaatgagtggaaagagaaaggtttttctgtttatggatctgtttgtgatgcatcttcttcttctcaaagagaggagct 113  Q
    |||| |||||||||||| |||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||| |||||||||||||||||||    
T  30707315 aagaagagctgaataaatgcttaaatgagtggaaagagaagggtttttctgtctatggatcggtttgtgatgcttcttctccttctcaaagagaggagct 30707216  T
Q  114 tattcgaaatgtggcttcttctttcaatggcaaactcaacatatttgtgagtttttccttttctatatattttcttttgcatttctatat 203  Q
    ||||||| | || |||||| ||||||| ||||| ||||||||| ||||||||||||| ||||||||||||||| |||||||||| |||||    
T  30707215 tattcgacaagttgcttctgctttcaacggcaagctcaacatacttgtgagtttttctttttctatatattttgttttgcatttgtatat 30707126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 23 - 201
Target Start/End: Complemental strand, 30702121 - 30701943
Alignment:
Q  23 tgaataaacgcttaaatgagtggaaagagaaaggtttttctgtttatggatctgtttgtgatgcatcttcttcttctcaaagagaggagcttattcgaaa 122  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||   ||||||||||||||||||| |||||| || ||||    
T  30702121 tgaataaatgcttaaatgagtggaaggagaaaggtttttctgtttatggatcagtttgtgatgtgacttcttcttctcaaagagaagagcttgttagaaa 30702022  T
Q  123 tgtggcttcttctttcaatggcaaactcaacatatttgtgagtttttccttttctatatattttcttttgcatttctat 201  Q
     ||||||||| ||||||| ||||| ||||||||  |||||||||||| |||||||||||||||| ||||||||||||||    
T  30702021 agtggcttctgctttcaacggcaagctcaacattcttgtgagttttttcttttctatatattttgttttgcatttctat 30701943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 364 - 554
Target Start/End: Complemental strand, 30708997 - 30708804
Alignment:
Q  364 acaaatgtgaggaagccaacaatcgagtatacggccgaagattattcgaaagtgatgactactaacttggattctgcatatcatctatgccaactgacat 463  Q
    ||||||||||||||||||||||  ||||| |   |||||||||| || |||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  30708997 acaaatgtgaggaagccaacaagtgagtaaagaaccgaagattactcaaaagtgatgattactaacttggattctgcataccatctatgccaactgacat 30708898  T
Q  464 atcctcttcttaaagaatctggaaatg---gaagcattgtgttcatttcctctgttgggtctctgacaagcgtaggtactggaagcatctatgc 554  Q
    |||||||||||||||||||||||||||   |||||||||| |||| |||||| ||||  ||||| |||||| ||||| |||||| ||| |||||    
T  30708897 atcctcttcttaaagaatctggaaatgcaagaagcattgtattcaattcctccgttgcatctctaacaagcataggttctggaaccatatatgc 30708804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 650 - 777
Target Start/End: Complemental strand, 30706063 - 30705936
Alignment:
Q  650 tttcttcagctgcaatcaatcagctgacaaaaagtcttgcttgtgaatgggcgaaagacaacatcaggagcaactgtgtcgcaccctggtatacaaaaac 749  Q
    |||||||||| || ||||||||||| ||||| | |||||||||||||||||| |||||||| || |||||||||||||| ||||| ||||||||||||||    
T  30706063 tttcttcagccgcgatcaatcagctaacaaagaatcttgcttgtgaatgggcaaaagacaatataaggagcaactgtgttgcaccgtggtatacaaaaac 30705964  T
Q  750 accacttgtggaacatgtaatgctcttt 777  Q
    | | ||||||||||| ||||||||||||    
T  30705963 atcgcttgtggaacaggtaatgctcttt 30705936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 647 - 752
Target Start/End: Complemental strand, 30699225 - 30699120
Alignment:
Q  647 tgttttcttcagctgcaatcaatcagctgacaaaaagtcttgcttgtgaatgggcgaaagacaacatcaggagcaactgtgtcgcaccctggtatacaaa 746  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||||||||||| |||||||| || |||| ||| || ||||| || |||||||||||    
T  30699225 tgttttcttcagctgcaatcaatcagctgaacaaaggtcttgcttgtgaatgggcaaaagacaatataaggatcaattgcgtcgcgccttggtatacaaa 30699126  T
Q  747 aacacc 752  Q
    ||||||    
T  30699125 aacacc 30699120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 445 - 517
Target Start/End: Original strand, 30790307 - 30790379
Alignment:
Q  445 catctatgccaactgacatatcctcttcttaaagaatctggaaatggaagcattgtgttcatttcctctgttg 517  Q
    ||||| ||||||||  || |||||||||| ||||||||||||||||| ||||||||||||||||| |||||||    
T  30790307 catctgtgccaactttcacatcctcttctaaaagaatctggaaatggtagcattgtgttcatttcatctgttg 30790379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 654 - 770
Target Start/End: Original strand, 30790525 - 30790641
Alignment:
Q  654 ttcagctgcaatcaatcagctgacaaaaagtcttgcttgtgaatgggcgaaagacaacatcaggagcaactgtgtcgcaccctggtatacaaaaacacca 753  Q
    |||||||||||| |||||||| ||||||| ||| || ||||||||||| | ||||||||| |||||||| ||||| | ||| |||   || | ||| |||    
T  30790525 ttcagctgcaattaatcagcttacaaaaaatctggcctgtgaatgggcaatagacaacataaggagcaattgtgttgtaccatgggcaaccagaacccca 30790624  T
Q  754 cttgtggaacatgtaat 770  Q
    ||||| |||||||||||    
T  30790625 cttgtagaacatgtaat 30790641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 219 - 260
Target Start/End: Original strand, 1502590 - 1502631
Alignment:
Q  219 taagaaaatgacgtaattgaatgtaatcacatgtgtttgtgt 260  Q
    |||||||||||| ||||||||||||||||||||||| |||||    
T  1502590 taagaaaatgacataattgaatgtaatcacatgtgtctgtgt 1502631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 433 - 513
Target Start/End: Original strand, 30798652 - 30798732
Alignment:
Q  433 gattctgcatatcatctatgccaactgacatatcctcttcttaaagaatctggaaatggaagcattgtgttcatttcctct 513  Q
    ||||||||||||||| | || ||||| ||| |||||||||| || | || |||||  ||||||||||| ||||||||||||    
T  30798652 gattctgcatatcatttgtgtcaacttacacatcctcttctaaaggcatatggaatgggaagcattgtattcatttcctct 30798732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 4946249 - 4946206
Alignment:
Q  217 tttaagaaaatgacgtaattgaatgtaatcacatgtgtttgtgt 260  Q
    |||||||||||||  ||||||||||||||||||||||| |||||    
T  4946249 tttaagaaaatgatataattgaatgtaatcacatgtgtctgtgt 4946206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 436 - 513
Target Start/End: Complemental strand, 30868512 - 30868436
Alignment:
Q  436 tctgcatatcatctatgccaactgacatatcctcttcttaaaga-atctggaaatggaagcattgtgttcatttcctct 513  Q
    |||||||||||| | |||||||| ||| |||||||||| ||||| ||||||||  ||||||||||| ||||||||||||    
T  30868512 tctgcatatcatttgtgccaacttaca-atcctcttct-aaagacatctggaatgggaagcattgtattcatttcctct 30868436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 30367666 - 30367629
Alignment:
Q  215 aatttaagaaaatgacgtaattgaatgtaatcacatgt 252  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  30367666 aatttaagaaaatgacataattgaatgtaatcaaatgt 30367629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 10893916 - 10893870
Alignment:
Q  215 aatttaagaaaatgacgtaattgaatgtaatcacatgtgtttgtgtc 261  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||    
T  10893916 aatttaagaaaatgacataattgaatgtaatcacatgtgttggtgtc 10893870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 18750888 - 18750925
Alignment:
Q  215 aatttaagaaaatgacgtaattgaatgtaatcacatgt 252  Q
    |||||||||||||||| |||||||||||||||||||||    
T  18750888 aatttaagaaaatgacataattgaatgtaatcacatgt 18750925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 44172937 - 44172892
Alignment:
Q  215 aatttaagaaaatgacgtaattgaatgtaatcacatgtgtttgtgt 260  Q
    ||||| |||||||||| ||||| |||||||||||||||||||||||    
T  44172937 aatttgagaaaatgacataattcaatgtaatcacatgtgtttgtgt 44172892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 30013213 - 30013253
Alignment:
Q  221 agaaaatgacgtaattgaatgtaatcacatgtgtttgtgtc 261  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  30013213 agaaaatgacgtaattcaatataatcacatgtgtttgtgtc 30013253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 650531 - 650570
Alignment:
Q  215 aatttaagaaaatgacgtaattgaatgtaatcacatgtgt 254  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  650531 aatttaagaaaatgacataattgaatgcaatcacatgtgt 650570  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 43160496 - 43160535
Alignment:
Q  215 aatttaagaaaatgacgtaattgaatgtaatcacatgtgt 254  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  43160496 aatttaagaaaataacataattgaatgtaatcacatgtgt 43160535  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 466 - 512
Target Start/End: Original strand, 23081116 - 23081162
Alignment:
Q  466 cctcttcttaaagaatctggaaatggaagcattgtgttcatttcctc 512  Q
    |||||||| ||| |||||||||||||||||||||| ||||| |||||    
T  23081116 cctcttctaaaacaatctggaaatggaagcattgtattcatatcctc 23081162  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 21238829 - 21238874
Alignment:
Q  215 aatttaagaaaatgacgtaattgaatgtaatcacatgtgtttgtgt 260  Q
    |||||||||||||| |  ||||||||||||||||||||||| ||||    
T  21238829 aatttaagaaaatgtcaaaattgaatgtaatcacatgtgttagtgt 21238874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 469 - 518
Target Start/End: Original strand, 23057856 - 23057905
Alignment:
Q  469 cttcttaaagaatctggaaatggaagcattgtgttcatttcctctgttgg 518  Q
    ||||| |||||||||||| |||||||||| |||||||| || ||||||||    
T  23057856 cttctaaaagaatctggatatggaagcatagtgttcatatcttctgttgg 23057905  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 32691755 - 32691794
Alignment:
Q  215 aatttaagaaaatgacgtaattgaatgtaatcacatgtgt 254  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  32691755 aatttaagaaaatgacataattgaatgtaatcacatgtgt 32691794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 31681877 - 31681838
Alignment:
Q  215 aatttaagaaaatgacgtaattgaatgtaatcacatgtgt 254  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  31681877 aatttaagaaaatgacataattgaatgaaatcacatgtgt 31681838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 8917582 - 8917544
Alignment:
Q  216 atttaagaaaatgacgtaattgaatgtaatcacatgtgt 254  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  8917582 atttaagaaaatgacataattgaatgtaatcagatgtgt 8917544  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 645344 - 645380
Alignment:
Q  215 aatttaagaaaatgacgtaattgaatgtaatcacatg 251  Q
    |||||||||||||||| ||||||||||||||||||||    
T  645344 aatttaagaaaatgacataattgaatgtaatcacatg 645380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 28322253 - 28322298
Alignment:
Q  215 aatttaagaaaatgacgtaattgaatgtaatcacatgtgtttgtgt 260  Q
    ||||| |||||||||  |||||||||||||||||||||||| ||||    
T  28322253 aatttgagaaaatgaattaattgaatgtaatcacatgtgttggtgt 28322298  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 683063 - 683103
Alignment:
Q  214 gaatttaagaaaatgacgtaattgaatgtaatcacatgtgt 254  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  683063 gaatttgagaaaatgacataattgaatgtaatcacatgtgt 683103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 45615462 - 45615423
Alignment:
Q  215 aatttaagaaaatgacgtaattgaatgtaatcacatgtgt 254  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  45615462 aatttaagaaaatgacataattgaacgtaatcacatgtgt 45615423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 9988745 - 9988707
Alignment:
Q  216 atttaagaaaatgacgtaattgaatgtaatcacatgtgt 254  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  9988745 atttgagaaaatgacataattgaatgtaatcacatgtgt 9988707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 41989576 - 41989622
Alignment:
Q  215 aatttaagaaaatgacgtaattgaatgtaatcacatgtgtttgtgtc 261  Q
    |||||||||||||||| |||||||||||||| |  ||||||||||||    
T  41989576 aatttaagaaaatgacataattgaatgtaattaactgtgtttgtgtc 41989622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 232 - 261
Target Start/End: Original strand, 51939141 - 51939170
Alignment:
Q  232 taattgaatgtaatcacatgtgtttgtgtc 261  Q
    ||||||||||||||||||||||||||||||    
T  51939141 taattgaatgtaatcacatgtgtttgtgtc 51939170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 32125175 - 32125218
Alignment:
Q  217 tttaagaaaatgacgtaattgaatgtaatcacatgtgtttgtgt 260  Q
    ||||||||||| || ||||||||||||||||||||||| |||||    
T  32125175 tttaagaaaatcacttaattgaatgtaatcacatgtgtatgtgt 32125218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 6284708 - 6284663
Alignment:
Q  215 aatttaagaaaatgacgtaattgaatgtaatcacatgtgtttgtgt 260  Q
    ||||| |||||||||| ||||||||| |||||||||||||| ||||    
T  6284708 aatttgagaaaatgacataattgaatttaatcacatgtgttagtgt 6284663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 26462692 - 26462653
Alignment:
Q  215 aatttaagaaaatgacgtaattgaatgtaatcacatgtgt 254  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  26462692 aatttaagaaaatgaaataattgaatgtaatcacatgtgt 26462653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 35198278 - 35198240
Alignment:
Q  215 aatttaagaaaatgacgtaattgaatgtaatcacatgtg 253  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  35198278 aatttaagaaaatgaattaattgaatgtaatcacatgtg 35198240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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