View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2986R-Insertion-3 (Length: 900)

Name: NF2986R-Insertion-3
Description: NF2986R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2986R-Insertion-3
NF2986R-Insertion-3
[»] chr2 (19 HSPs)
chr2 (311-900)||(30836437-30837007)
chr2 (323-613)||(30831023-30831313)
chr2 (9-199)||(30836055-30836245)
chr2 (368-623)||(30854244-30854496)
chr2 (357-624)||(30841719-30841984)
chr2 (206-310)||(30836283-30836387)
chr2 (225-286)||(7350543-7350604)
chr2 (222-262)||(18693662-18693702)
chr2 (206-286)||(20565059-20565139)
chr2 (206-261)||(24579652-24579707)
chr2 (206-261)||(25186226-25186281)
chr2 (206-272)||(4897554-4897620)
chr2 (206-272)||(4944948-4945014)
chr2 (222-272)||(23250320-23250370)
chr2 (206-256)||(37852037-37852087)
chr2 (206-259)||(20200729-20200782)
chr2 (206-259)||(35728923-35728976)
chr2 (206-275)||(37830721-37830790)
chr2 (206-259)||(38904085-38904138)
[»] chr4 (21 HSPs)
chr4 (214-290)||(38453258-38453334)
chr4 (206-290)||(50362123-50362207)
chr4 (206-291)||(7230272-7230357)
chr4 (206-291)||(2649717-2649802)
chr4 (223-292)||(10303512-10303581)
chr4 (206-259)||(30893413-30893466)
chr4 (221-289)||(20799393-20799461)
chr4 (206-290)||(49473638-49473722)
chr4 (214-289)||(12322667-12322742)
chr4 (222-289)||(14577507-14577574)
chr4 (206-289)||(19588148-19588231)
chr4 (206-292)||(8494978-8495064)
chr4 (222-292)||(16470295-16470365)
chr4 (206-256)||(18094432-18094482)
chr4 (206-272)||(20383499-20383565)
chr4 (206-272)||(44909835-44909901)
chr4 (206-272)||(48283311-48283377)
chr4 (206-272)||(56551576-56551642)
chr4 (221-290)||(8415494-8415563)
chr4 (206-271)||(23775530-23775595)
chr4 (240-289)||(49308814-49308863)
[»] chr1 (14 HSPs)
chr1 (222-290)||(5907792-5907860)
chr1 (206-291)||(24740824-24740909)
chr1 (222-289)||(25532967-25533034)
chr1 (206-272)||(17283962-17284028)
chr1 (206-276)||(45190253-45190323)
chr1 (240-293)||(15803255-15803308)
chr1 (223-291)||(1794588-1794656)
chr1 (206-289)||(25086477-25086560)
chr1 (222-289)||(26803451-26803518)
chr1 (224-291)||(35308177-35308244)
chr1 (206-276)||(8210369-8210439)
chr1 (223-289)||(29739331-29739397)
chr1 (206-291)||(45139990-45140075)
chr1 (228-281)||(50638922-50638975)
[»] chr7 (9 HSPs)
chr7 (206-292)||(27462420-27462506)
chr7 (222-292)||(27833401-27833471)
chr7 (214-290)||(33473513-33473589)
chr7 (206-261)||(3830090-3830145)
chr7 (222-291)||(8237632-8237701)
chr7 (222-289)||(10244721-10244788)
chr7 (221-292)||(44410589-44410660)
chr7 (222-272)||(18714459-18714509)
chr7 (222-291)||(19416506-19416575)
[»] chr5 (12 HSPs)
chr5 (206-292)||(37932321-37932407)
chr5 (206-285)||(27086076-27086155)
chr5 (206-276)||(16752486-16752556)
chr5 (240-289)||(16089444-16089493)
chr5 (222-290)||(6624769-6624837)
chr5 (206-290)||(27219281-27219365)
chr5 (206-289)||(5485180-5485263)
chr5 (222-289)||(15889405-15889472)
chr5 (240-291)||(42505864-42505915)
chr5 (222-272)||(5846040-5846090)
chr5 (222-292)||(22522801-22522871)
chr5 (240-289)||(36321512-36321561)
[»] chr3 (16 HSPs)
chr3 (206-272)||(51882184-51882250)
chr3 (206-290)||(1149053-1149137)
chr3 (240-292)||(10926460-10926512)
chr3 (206-289)||(45431942-45432025)
chr3 (223-276)||(759595-759648)
chr3 (209-270)||(10102812-10102873)
chr3 (209-270)||(10213735-10213796)
chr3 (232-272)||(23525131-23525171)
chr3 (206-293)||(14827515-14827602)
chr3 (206-289)||(35863797-35863880)
chr3 (214-261)||(41817521-41817568)
chr3 (229-295)||(3100209-3100275)
chr3 (222-272)||(10922308-10922358)
chr3 (240-290)||(16980372-16980422)
chr3 (222-292)||(52904143-52904213)
chr3 (222-291)||(16792974-16793043)
[»] chr8 (10 HSPs)
chr8 (206-290)||(13286124-13286207)
chr8 (214-290)||(15020754-15020830)
chr8 (207-289)||(18533663-18533745)
chr8 (206-290)||(36781401-36781485)
chr8 (206-273)||(7968925-7968991)
chr8 (204-290)||(8999873-8999960)
chr8 (222-289)||(27587215-27587282)
chr8 (206-292)||(444405-444490)
chr8 (208-261)||(8881297-8881350)
chr8 (240-293)||(23816780-23816833)
[»] chr6 (8 HSPs)
chr6 (221-292)||(31971520-31971591)
chr6 (214-289)||(7082984-7083059)
chr6 (222-261)||(32524420-32524459)
chr6 (223-298)||(33824866-33824941)
chr6 (222-291)||(9111039-9111108)
chr6 (246-291)||(13044638-13044683)
chr6 (206-259)||(18253323-18253376)
chr6 (207-276)||(26181700-26181769)
[»] scaffold0011 (1 HSPs)
scaffold0011 (222-291)||(185255-185324)
[»] scaffold0005 (1 HSPs)
scaffold0005 (222-289)||(239801-239868)
[»] scaffold0238 (1 HSPs)
scaffold0238 (222-272)||(25400-25450)
[»] scaffold0040 (1 HSPs)
scaffold0040 (206-292)||(56775-56860)


Alignment Details
Target: chr2 (Bit Score: 507; Significance: 0; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 311 - 900
Target Start/End: Original strand, 30836437 - 30837007
Alignment:
Q  311 aaacccaaaatcatcatatgtcttatatttgagatattgaagcttgaagagagaaaaagacctgaaagaaaccccaatctttgcaagcaaggtgaagctt 410  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30836437 aaacccaaaatcatcagatgtcttatatttgagatattgaagcttgaagagagaaaaagacctgaaagaaaccccaatctttgcaagcaaggtgaagctt 30836536  T
Q  411 aaccaattctgaactcccaaattcttctgaatgcaacttatacatatcaataactggaatttcaaggttagtatcaacttcagagagaatcaagtcttga 510  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30836537 aaccaattctgaactcccaagttcttctgaatgcaacttatacatatcaataactggaatttgaaggttagtatcaacttcagagagaatcaagtcttga 30836636  T
Q  511 tgattaggctgaatgtatcttggtggaacggttgaaatatttccatctttagataactcttgaactgatggtaccaaaagagaagtacctgatgggttct 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30836637 tgattaggctgaatgtatcttggtggaacggttgaaatatttccatctttagataactcttgaactgatggtaccaaaagagaagtacctgatgggttct 30836736  T
Q  611 tgattccttccattttctttgttattaattcgcaatgtatataacaagcaaaataagatatggcctcttttctcctaattaaacctatttatagaatgca 710  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30836737 tgattccttccattttctttgttattaattcgcaatgtatataacaagcaaaataagatatggcctcttttctcctaattaaacctatttatagaatgca 30836836  T
Q  711 aaccgcatgaaatttgtttggatcgatcaagtcccaccgcatcaattgttttaaacatagaaaatattttgtttgaatcttgatcgatttgacatatgta 810  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||| |||||||||||||||    
T  30836837 aaccgcatgaaatttgtttggatcgatcaagtcccaccgcatcaattg------------------ttttgtttgaatcttgatagatttgacatatgta 30836918  T
Q  811 atatggaggactagaggtcatcaatcatcctctccctacttcgaattttgtctgttttaacattttgtttccattcatttttctccctat 900  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30836919 atatggaggactagaggtcatcaatcatcctctccctacttcgaattttgtctgttttaacattttgtttccattca-ttttctccctat 30837007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 323 - 613
Target Start/End: Original strand, 30831023 - 30831313
Alignment:
Q  323 atcatatgtcttatatttgagatattgaagcttgaagagagaaaaagacctgaaagaaaccccaatctttgcaagcaaggtgaagcttaaccaattctga 422  Q
    |||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||    
T  30831023 atcatatgtcatatatttaagatatttaagcttgaagagagaaaaagacctgaaagaatccccaatctttgcaagcaaggtgaaacttaagcaattctga 30831122  T
Q  423 actcccaaattcttctgaatgcaacttatacatatcaataactggaatttcaaggttagtatcaacttcagagagaatcaagtcttgatgattaggctga 522  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30831123 acttccaaattcttctgaatgcaacttatacatatcaataactggaatttgaaggttagtatcaacttcagatagaatcaagtcttgatgattaggctga 30831222  T
Q  523 atgtatcttggtggaacggttgaaatatttccatctttagataactcttgaactgatggtaccaaaagagaagtacctgatgggttcttga 613  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  30831223 atgtatcttggtggaacggttgaaatctttccatctttagctaactcttgaactgatggtaccaaaagagaagttcctgatggattcttga 30831313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 30836055 - 30836245
Alignment:
Q  9 atagtatattaagaatatacaaaaattaaattaataatactaaacagttgaatttatgacagaaaagcatcaaatttatcaattgaatatcaatttcaat 108  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30836055 atagtatattaagaatatacaaaaattaaattaataataccaaatagttgaatttatgacagaaaagcatcaaatttatcaattgaatatcaatttcaat 30836154  T
Q  109 tttttcaatctctaatttaatcttcgatattattttgggtttgacatatcatatataatgttttaaaagacaatttatatatcaaatcaca 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30836155 tttttcaatctctaatttaatcttcgatattattttgggtttgacatatcatatataatgttttaaaagacaatttatatatcaaatcaca 30836245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 368 - 623
Target Start/End: Original strand, 30854244 - 30854496
Alignment:
Q  368 agacctgaaagaaaccccaatctttgcaagcaaggtgaagcttaaccaattctgaactcccaaattcttctgaatgcaacttatacatatcaataactgg 467  Q
    ||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||||| |||||   ||| |||| || | |||||||||||||||    
T  30854244 agacctgaaagaatccccaatctttgcaagcaaggtgaagcttagacaattctaaactcccatattctaaagaaagcaatttcttcatatcaataactgg 30854343  T
Q  468 aatttcaaggttagtatcaacttcagagagaatcaagtcttgatgattaggctgaatgtatcttggtggaacggttgaaatatttccatctttagataac 567  Q
    |||||||||  || ||| | |||||  ||  | ||| || |  || | || |||||| |||||||||||||| |||||||| |||   || ||||  |||    
T  30854344 aatttcaagtatactattagcttcattgatgaccaattcatcgtgttgagactgaatatatcttggtggaactgttgaaattttt---tccttagccaac 30854440  T
Q  568 tcttgaactgatggtaccaaaagagaagtacctgatgggttcttgattccttccat 623  Q
    ||||||||||||||||||| ||||||||| || || |||||||||||  |||||||    
T  30854441 tcttgaactgatggtaccagaagagaagttccagaggggttcttgatctcttccat 30854496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 357 - 624
Target Start/End: Original strand, 30841719 - 30841984
Alignment:
Q  357 aagagagaaaa-agacctgaaagaaaccccaatctttgcaagcaaggtgaagcttaaccaattctgaactcccaaattcttctgaatgcaacttatacat 455  Q
    ||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||  ||||||| |||||||| |||||   ||| |||| || | |||    
T  30841719 aagagagaaaagagacctggaagaatccccaatctttgcaagcaaggtgaagcttagacaattctaaactcccatattctaaagaaagcaatttcttcat 30841818  T
Q  456 atcaataactggaatttcaaggttagtatcaacttcagagagaatcaagtcttgatgattaggctgaatgtatcttggtggaacggttgaaatatttcca 555  Q
    |||||||||||||||||||||  || ||| | |||||  ||  | ||| |||| ||| | || |||||| ||||||| |||||| |||||||| |||       
T  30841819 atcaataactggaatttcaagtatactattagcttcattgatgaccaattcttcatgttgagactgaatatatcttgctggaactgttgaaatcttt--- 30841915  T
Q  556 tctttagataactcttgaactgatggtaccaaaagagaagtacctgatgggttcttgattccttccatt 624  Q
    || ||||  || ||||| ||||||||||||| ||||||||| || || |||||||||||  ||||||||    
T  30841916 tccttagccaattcttggactgatggtaccagaagagaagttccagaggggttcttgatctcttccatt 30841984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 206 - 310
Target Start/End: Original strand, 30836283 - 30836387
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaaatcagaaggctaaa 305  Q
    |||||||||||||  ||||||||||||||| |||||| | |||||||||||||||  |||||||||| ||| ||||||||||||||||||||||||||||    
T  30836283 ttttttgcggtggtcagggtttgaaccctgaattttgtaaatattatgcattgtctctgccaactgagctaagcttacgaggacaaatcagaaggctaaa 30836382  T
Q  306 aatgt 310  Q
    |||||    
T  30836383 aatgt 30836387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 7350604 - 7350543
Alignment:
Q  225 tttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgag 286  Q
    |||||||||| || |||||| |||||||||||||||| | |||||||| ||| |||||||||    
T  7350604 tttgaaccctagactttgcatatattatgcattgtccataccaactgagctaagcttacgag 7350543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 18693662 - 18693702
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtcct 262  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  18693662 gggtttgaaccctggatcttgcatatattatgcattgtcct 18693702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 20565059 - 20565139
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgag 286  Q
    ||||||| ||||| | |||||||||||| |||  ||||| |||||||||||||||| | |||||||| ||| ||| |||||    
T  20565059 ttttttgtggtggttggggtttgaaccccggaccttgcatatattatgcattgtccctaccaactgagctaagctcacgag 20565139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 24579652 - 24579707
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtcc 261  Q
    ||||||| |||||| || ||||||||||||||  ||||| ||||||||||||||||    
T  24579652 ttttttgtggtggccagagtttgaaccctggaccttgcatatattatgcattgtcc 24579707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 25186226 - 25186281
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtcc 261  Q
    ||||||| ||||||| |||||||||||| |||  ||||| ||||||||||||||||    
T  25186226 ttttttgtggtggctggggtttgaaccccggaccttgcatatattatgcattgtcc 25186281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 4897620 - 4897554
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactga 272  Q
    ||||||| |||||| |||||||||||| |  |  ||||| |||||||||||||||||| ||||||||    
T  4897620 ttttttgtggtggccagggtttgaaccataaaccttgcatatattatgcattgtccttaccaactga 4897554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 4945014 - 4944948
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactga 272  Q
    ||||||| |||||| |||||||||||| |  |  ||||| |||||||||||||||||| ||||||||    
T  4945014 ttttttgtggtggccagggtttgaaccataaaccttgcatatattatgcattgtccttaccaactga 4944948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 23250320 - 23250370
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactga 272  Q
    ||||||||||||||||  ||||| |||||||||||||| ||| ||||||||    
T  23250320 gggtttgaaccctggaccttgcatatattatgcattgttcttaccaactga 23250370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 256
Target Start/End: Complemental strand, 37852087 - 37852037
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcat 256  Q
    ||||||| ||||| ||||||||||||||||||  ||||| |||||||||||    
T  37852087 ttttttgtggtggttagggtttgaaccctggaccttgcatatattatgcat 37852037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 20200782 - 20200729
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgt 259  Q
    ||||||| ||||||  ||||||||||||||||  ||||| ||||||||||||||    
T  20200782 ttttttgtggtggccggggtttgaaccctggaccttgcatatattatgcattgt 20200729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 35728976 - 35728923
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgt 259  Q
    ||||||| ||||| |||| ||||||||||||| ||| || ||||||||||||||    
T  35728976 ttttttgtggtggttaggatttgaaccctggactttacatatattatgcattgt 35728923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 37830790 - 37830721
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaact 275  Q
    ||||||||||||||  ||||||||| | ||||| ||| | |||||||| ||||||| | |||||||||||    
T  37830790 ttttttgcggtggccggggtttgaatcttggatcttgtatatattatgtattgtccctaccaactgaact 37830721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 38904138 - 38904085
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgt 259  Q
    ||||||| ||||| |||||||||||||||| |  ||||| ||||||||||||||    
T  38904138 ttttttgtggtggttagggtttgaaccctgaaccttgcatatattatgcattgt 38904085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 38453334 - 38453258
Alignment:
Q  214 ggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggaca 290  Q
    ||||||| ||||| ||||||||||  ||||| |||||||||||||||| |||||||||| ||| ||| |||||||||    
T  38453334 ggtggctggggttcgaaccctggaccttgcatatattatgcattgtccatgccaactgagctaagctcacgaggaca 38453258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 50362123 - 50362207
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggaca 290  Q
    ||||||| |||||| | |||||||||||||||  ||||| |||||||||||||||| | |||||||| ||| ||| |||||||||    
T  50362123 ttttttgtggtggccaaggtttgaaccctggaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggaca 50362207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 206 - 291
Target Start/End: Complemental strand, 7230357 - 7230272
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaa 291  Q
    ||||||| ||||||   ||||||||||| |||  ||||| |||||||||||||||||| |||||||| ||| ||| ||||||||||    
T  7230357 ttttttgtggtggccgaggtttgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctcacgaggacaa 7230272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 2649717 - 2649802
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaa 291  Q
    ||||||| ||||||||||||| |||| | |||  ||||| |||||||||||||||| | |||||||| |||  |||||| ||||||    
T  2649717 ttttttgtggtggctagggttcgaactccggaccttgcatatattatgcattgtccctaccaactgagctaaacttacggggacaa 2649802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 292
Target Start/End: Original strand, 10303512 - 10303581
Alignment:
Q  223 ggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaaa 292  Q
    |||| |||||| |||| ||||| || ||||||||||||||| |||||||| ||| ||| |||||||||||    
T  10303512 ggttcgaaccccggatcttgcatattttatgcattgtccttaccaactgagctaagctcacgaggacaaa 10303581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 30893413 - 30893466
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgt 259  Q
    ||||||||||||||| ||||||||||| |||| |||||| |||| |||||||||    
T  30893413 ttttttgcggtggctggggtttgaaccgtggactttgcatatatcatgcattgt 30893466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 221 - 289
Target Start/End: Original strand, 20799393 - 20799461
Alignment:
Q  221 agggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggac 289  Q
    ||||||||||||| |||  ||||| |||||||||||||||| | |||||||| ||| ||| ||||||||    
T  20799393 agggtttgaaccccggaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggac 20799461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 290
Target Start/End: Complemental strand, 49473722 - 49473638
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggaca 290  Q
    ||||||| |||| || ||||| |||||| |||  ||||| |||||||||||||||||| |||||||  ||| ||| |||||||||    
T  49473722 ttttttgtggtgactggggttcgaaccccggaccttgcatatattatgcattgtccttaccaactgggctaagctcacgaggaca 49473638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 289
Target Start/End: Complemental strand, 12322742 - 12322667
Alignment:
Q  214 ggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggac 289  Q
    |||||||  ||||||||||| |||  ||||| |||||||||||||||| | |||||||| ||| ||| ||||||||    
T  12322742 ggtggctgaggtttgaaccccggaacttgcatatattatgcattgtccgtaccaactgagctaagctcacgaggac 12322667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 14577507 - 14577574
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggac 289  Q
    |||||||||| | ||| |||||| |||||||||||||||||| |||||||| |||  || ||||||||    
T  14577507 gggtttgaactccggactttgcatatattatgcattgtccttaccaactgagctaaactcacgaggac 14577574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 289
Target Start/End: Complemental strand, 19588231 - 19588148
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggac 289  Q
    ||||||| ||||||  ||||||||||||||||  ||||| || ||||||||||||| | |||| ||| ||| ||| ||||||||    
T  19588231 ttttttgtggtggccggggtttgaaccctggaccttgcatattttatgcattgtccataccaattgagctaagctcacgaggac 19588148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 292
Target Start/End: Complemental strand, 8495064 - 8494978
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaaa 292  Q
    ||||||| ||||||  || ||||||| | |||| ||||| |||||||||||||||| | |||||||| ||| | | |||||||||||    
T  8495064 ttttttgtggtggccgggatttgaactcgggatcttgcatatattatgcattgtccctaccaactgagctaagttcacgaggacaaa 8494978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 292
Target Start/End: Complemental strand, 16470365 - 16470295
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaaa 292  Q
    ||||| ||||||||||  ||||| || ||||||||||||| | |||| ||| ||||||| |||||||||||    
T  16470365 gggttcgaaccctggaccttgcatattttatgcattgtccataccaattgagctacgctcacgaggacaaa 16470295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 256
Target Start/End: Complemental strand, 18094482 - 18094432
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcat 256  Q
    ||||||| ||||| ||||||||||||||||||  ||||| |||||||||||    
T  18094482 ttttttgtggtggttagggtttgaaccctggaccttgcatatattatgcat 18094432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 20383565 - 20383499
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactga 272  Q
    ||||||| ||||| | |||||||||||| |||  ||||| |||||||||||||||| | ||||||||    
T  20383565 ttttttgtggtggatggggtttgaaccccggaccttgcatatattatgcattgtccataccaactga 20383499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 44909901 - 44909835
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactga 272  Q
    ||||||| |||||||  ||||||||||||| | |||||| ||| ||||||||||| || ||||||||    
T  44909901 ttttttgtggtggctgaggtttgaaccctgaactttgcatatactatgcattgtctttaccaactga 44909835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 48283311 - 48283377
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactga 272  Q
    ||||||| |||| || || |||||||||| ||  ||||| ||||||||||||||| |||||||||||    
T  48283311 ttttttgtggtgtctgggatttgaaccctagaacttgcatatattatgcattgtcattgccaactga 48283377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 56551576 - 56551642
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactga 272  Q
    ||||||| ||||||  |||||||||||  |||  ||||| |||||||||||||||||| ||||||||    
T  56551576 ttttttgtggtggccggggtttgaacctcggaccttgcatatattatgcattgtccttaccaactga 56551642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 8415494 - 8415563
Alignment:
Q  221 agggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggaca 290  Q
    |||||||||||| ||||| || || |||||||||||||||| | ||||||||| || ||| | |||||||    
T  8415494 agggtttgaaccttggatcttacatatattatgcattgtccataccaactgaattaagctcatgaggaca 8415563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 23775595 - 23775530
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactg 271  Q
    ||||||| ||||| | ||||| ||||||||||  ||||| |||||||||||||||| | |||||||    
T  23775595 ttttttgtggtggttggggttcgaaccctggaccttgcatatattatgcattgtccctaccaactg 23775530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 49308863 - 49308814
Alignment:
Q  240 ttgcagatattatgcattgtccttgccaactgaactacgcttacgaggac 289  Q
    ||||| ||||||||||||||||||| ||||||| ||| ||||||| ||||    
T  49308863 ttgcatatattatgcattgtccttgtcaactgagctaagcttacggggac 49308814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 5907860 - 5907792
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggaca 290  Q
    ||||||||||||||||  ||||| ||||||||||||||||||||||||||| ||| ||| ||| |||||    
T  5907860 gggtttgaaccctggaccttgcatatattatgcattgtccttgccaactgagctaagctcacggggaca 5907792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 24740824 - 24740909
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaa 291  Q
    ||||||| ||||||| |||||||||||| |||| ||||| | || || |||||||| | |||||||| ||||||| ||||||||||    
T  24740824 ttttttgtggtggctggggtttgaaccccggatcttgcatacatcatacattgtccctaccaactgagctacgctcacgaggacaa 24740909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 25533034 - 25532967
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggac 289  Q
    |||||||||||| |||  ||||| |||||||||||||||| | |||||||||||| ||| ||||||||    
T  25533034 gggtttgaaccccggaccttgcatatattatgcattgtccataccaactgaactaagctcacgaggac 25532967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 17284028 - 17283962
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactga 272  Q
    ||||||| |||| | |||||| ||||||||||  ||||| |||||||||||||||||| ||||||||    
T  17284028 ttttttgtggtgtccagggttcgaaccctggaccttgcatatattatgcattgtccttaccaactga 17283962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 206 - 276
Target Start/End: Original strand, 45190253 - 45190323
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaacta 276  Q
    ||||||| ||||||||||||||||| || | |  ||||| |||||||||||||||| | ||||||||||||    
T  45190253 ttttttgtggtggctagggtttgaatcccgaaccttgcatatattatgcattgtccataccaactgaacta 45190323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 15803255 - 15803308
Alignment:
Q  240 ttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaaat 293  Q
    ||||| ||||||||||||||||||||||||||||||| ||| ||| ||| ||||    
T  15803255 ttgcatatattatgcattgtccttgccaactgaactaagctcacggggataaat 15803308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 1794656 - 1794588
Alignment:
Q  223 ggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaa 291  Q
    ||||||||||| |||| ||||| |||||||||||||||| | | |||||| ||| ||| ||||||||||    
T  1794656 ggtttgaaccccggatcttgcatatattatgcattgtccatactaactgagctaagctcacgaggacaa 1794588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 289
Target Start/End: Complemental strand, 25086560 - 25086477
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggac 289  Q
    ||||||| |||||||||| |||||||||| ||  ||||| || ||||||||||||| | |||||||| ||| ||| || |||||    
T  25086560 ttttttgtggtggctaggatttgaaccctagaccttgcatattttatgcattgtccataccaactgagctaagctcacaaggac 25086477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 26803451 - 26803518
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggac 289  Q
    |||||||||||| ||| |||||| |||||||||||||||| | |||||||| ||| | | ||||||||    
T  26803451 gggtttgaaccccggactttgcatatattatgcattgtccataccaactgagctaagttcacgaggac 26803518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 35308244 - 35308177
Alignment:
Q  224 gtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaa 291  Q
    ||||||||||  ||||||| | |||||||||||||| | | |||||||||||| ||| ||||||||||    
T  35308244 gtttgaaccccagattttgtatatattatgcattgttcataccaactgaactaagctcacgaggacaa 35308177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 276
Target Start/End: Original strand, 8210369 - 8210439
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaacta 276  Q
    ||||||| ||||||  ||||| ||||||||||  ||| | |||||||||||||||||| |||||| |||||    
T  8210369 ttttttgtggtggccggggttcgaaccctggaccttgtatatattatgcattgtccttaccaactaaacta 8210439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 29739397 - 29739331
Alignment:
Q  223 ggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggac 289  Q
    ||||||||||| |||  ||||| || ||||||||||||||| |||||||| ||| ||| ||||||||    
T  29739397 ggtttgaaccccggaccttgcatattttatgcattgtccttaccaactgagctaagctaacgaggac 29739331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 45139990 - 45140075
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaa 291  Q
    ||||||| ||||||  |||||| ||| |||||  ||||| |||||||||||||||| | |||||||| ||| ||| ||| ||||||    
T  45139990 ttttttgtggtggccggggtttaaactctggaccttgcatatattatgcattgtccataccaactgagctaagctcacggggacaa 45140075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 50638922 - 50638975
Alignment:
Q  228 gaaccctggattttgcagatattatgcattgtccttgccaactgaactacgctt 281  Q
    ||||||||||  ||||| |||||||||||||||||| |||||||| ||| ||||    
T  50638922 gaaccctggaccttgcatatattatgcattgtccttaccaactgagctaagctt 50638975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 206 - 292
Target Start/End: Original strand, 27462420 - 27462506
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaaa 292  Q
    ||||||| ||||||  |||||||||||| |||  ||||| |||||||||||||||| | |||||||| ||| ||| |||||||||||    
T  27462420 ttttttgtggtggccggggtttgaaccccggaccttgcatatattatgcattgtccataccaactgagctatgctcacgaggacaaa 27462506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 27833401 - 27833471
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaaa 292  Q
    |||||||||||| |||  || || |||||||||||||||||| |||||||| ||| |||||||||||||||    
T  27833401 gggtttgaaccccggaccttacatatattatgcattgtccttaccaactgagctaggcttacgaggacaaa 27833471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 33473513 - 33473589
Alignment:
Q  214 ggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggaca 290  Q
    |||||| |||||| ||||||||||  ||||| ||||||||||||||||||||  |||||||||  || |||||||||    
T  33473513 ggtggccagggttggaaccctggaccttgcatatattatgcattgtccttgctgactgaactaaactcacgaggaca 33473589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 3830145 - 3830090
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtcc 261  Q
    ||||||| ||||||| ||||||||||||||||  ||||| ||||||||||||||||    
T  3830145 ttttttgtggtggctggggtttgaaccctggaccttgcatatattatgcattgtcc 3830090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 8237632 - 8237701
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaa 291  Q
    |||||||||||  ||| |||| | |||||||||||||||||| ||||| |||||| ||| ||||||||||    
T  8237632 gggtttgaacctcggactttgtatatattatgcattgtccttaccaacagaactaagctcacgaggacaa 8237701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 10244788 - 10244721
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggac 289  Q
    |||||||||||| |||  ||||| |||||||||||||||| | |||||||| ||| ||| ||||||||    
T  10244788 gggtttgaaccccggaccttgcatatattatgcattgtccataccaactgagctaagctcacgaggac 10244721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 292
Target Start/End: Complemental strand, 44410660 - 44410589
Alignment:
Q  221 agggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaaa 292  Q
    |||||| |||||| |||  ||| | ||||||| |||||||| |||||||||||||| |||||||| ||||||    
T  44410660 agggttcgaaccccggaccttgtatatattatacattgtccatgccaactgaactaagcttacgaagacaaa 44410589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 18714509 - 18714459
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactga 272  Q
    |||||||||||| |||  ||||| |||||||||||||||||| ||||||||    
T  18714509 gggtttgaaccccggaccttgcatatattatgcattgtccttaccaactga 18714459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 19416575 - 19416506
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaa 291  Q
    |||||||||||| |||  ||||| || ||||||||||||| | |||||||| ||| ||| ||||||||||    
T  19416575 gggtttgaaccccggaccttgcatattttatgcattgtccataccaactgagctaagctcacgaggacaa 19416506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 206 - 292
Target Start/End: Complemental strand, 37932407 - 37932321
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaaa 292  Q
    ||||||| |||||| |||||| |||||| |||  ||||| |||||||||||||||| | |||||||| ||| ||| |||||||||||    
T  37932407 ttttttgtggtggccagggttcgaaccccggaccttgcatatattatgcattgtccataccaactgagctaagctcacgaggacaaa 37932321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 27086155 - 27086076
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacga 285  Q
    ||||||| ||||||| ||||||||||||||||  ||||| ||||||| |||||| ||| | |||||||||| ||| ||||    
T  27086155 ttttttgtggtggctggggtttgaaccctggaccttgcatatattatacattgttcttacaaactgaactaagctcacga 27086076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 206 - 276
Target Start/End: Original strand, 16752486 - 16752556
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaacta 276  Q
    ||||||| ||||||| || || |||||| | || ||||| |||||||||||||||||| ||||||||||||    
T  16752486 ttttttgtggtggctgggattcgaaccccgaatcttgcatatattatgcattgtccttaccaactgaacta 16752556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 16089493 - 16089444
Alignment:
Q  240 ttgcagatattatgcattgtccttgccaactgaactacgcttacgaggac 289  Q
    ||||| |||||||||||||||| | |||||||||||| ||||||||||||    
T  16089493 ttgcaaatattatgcattgtccataccaactgaactaagcttacgaggac 16089444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 6624837 - 6624769
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggaca 290  Q
    ||||| |||||| |||  ||||| |||||||||||||||| |||||||||| ||| ||| |||||||||    
T  6624837 gggttcgaaccccggaccttgcatatattatgcattgtccatgccaactgagctaagctcacgaggaca 6624769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 290
Target Start/End: Complemental strand, 27219365 - 27219281
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggaca 290  Q
    ||||| ||||||||  ||||||||||||||||| || || |||||||| ||||||  ||| |||||| ||| ||| |||||||||    
T  27219365 tttttggcggtggccggggtttgaaccctggatcttacatatattatgtattgtctctgctaactgagctaagctcacgaggaca 27219281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 289
Target Start/End: Complemental strand, 5485263 - 5485180
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggac 289  Q
    ||||||| |||||| | |||| |||||| |||  ||||| |||||||||||||||| | |||||||| ||| ||| ||||||||    
T  5485263 ttttttgtggtggccaaggttagaaccccggacattgcatatattatgcattgtccctaccaactgagctaagctcacgaggac 5485180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 15889472 - 15889405
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggac 289  Q
    ||||||||||||| ||  ||||| |||||||||||||||| | |||||||| ||| ||| ||||||||    
T  15889472 gggtttgaaccctagaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggac 15889405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 291
Target Start/End: Complemental strand, 42505915 - 42505864
Alignment:
Q  240 ttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaa 291  Q
    ||||| |||||||||||||||| | |||||||| ||| ||||||||||||||    
T  42505915 ttgcatatattatgcattgtccataccaactgagctaagcttacgaggacaa 42505864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 5846090 - 5846040
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactga 272  Q
    ||||||||||||  || |||||| |||||||||||||||||| ||||||||    
T  5846090 gggtttgaaccccagactttgcatatattatgcattgtccttaccaactga 5846040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 22522801 - 22522871
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaaa 292  Q
    |||||||||||| |||  ||||| |||||||||||||||| | ||||| || ||| ||| |||||||||||    
T  22522801 gggtttgaaccccggaccttgcatatattatgcattgtccataccaaccgagctaagctcacgaggacaaa 22522871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 36321512 - 36321561
Alignment:
Q  240 ttgcagatattatgcattgtccttgccaactgaactacgcttacgaggac 289  Q
    ||||| |||||||||||||||||| |||||||| ||| ||| ||||||||    
T  36321512 ttgcatatattatgcattgtccttaccaactgagctaagctcacgaggac 36321561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 51882184 - 51882250
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactga 272  Q
    ||||||| ||||||  ||||||||||||||||| ||||| |||||||||||||||| | ||||||||    
T  51882184 ttttttgtggtggccggggtttgaaccctggatcttgcatatattatgcattgtccataccaactga 51882250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 1149053 - 1149137
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggaca 290  Q
    ||||||| |||| | |||||| ||||||| ||  ||||| |||||||||||||||||| |||||||| ||| ||| |||||||||    
T  1149053 ttttttgtggtgtccagggttcgaaccctagaccttgcatatattatgcattgtccttaccaactgagctaagctcacgaggaca 1149137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 10926512 - 10926460
Alignment:
Q  240 ttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaaa 292  Q
    ||||| |||||||||||||||||| |||||||| ||| |||||||||||||||    
T  10926512 ttgcatatattatgcattgtccttaccaactgagctaagcttacgaggacaaa 10926460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 206 - 289
Target Start/End: Complemental strand, 45432025 - 45431942
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggac 289  Q
    ||||||| |||||| ||||||||||||| |||  ||||| |||||||||||||||| | |||||||| ||| ||| || |||||    
T  45432025 ttttttgtggtggccagggtttgaaccccggaccttgcatatattatgcattgtccctaccaactgagctaagctaacaaggac 45431942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 759595 - 759648
Alignment:
Q  223 ggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaacta 276  Q
    ||||||||||||| | |||||| |||||||||||||||| | ||||||||||||    
T  759595 ggtttgaaccctgaactttgcatatattatgcattgtccctaccaactgaacta 759648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 10102873 - 10102812
Alignment:
Q  209 tttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaact 270  Q
    |||| ||||||  |||||||||||||||||||||||  ||||||||||||||| | ||||||    
T  10102873 tttgtggtggccggggtttgaaccctggattttgcatgtattatgcattgtccctaccaact 10102812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 10213796 - 10213735
Alignment:
Q  209 tttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaact 270  Q
    |||| ||||||  |||||||||||||||||||||||  ||||||||||||||| | ||||||    
T  10213796 tttgtggtggccggggtttgaaccctggattttgcatgtattatgcattgtccctaccaact 10213735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 23525131 - 23525171
Alignment:
Q  232 cctggattttgcagatattatgcattgtccttgccaactga 272  Q
    |||| |||||||| |||||||||||||||||||||||||||    
T  23525131 cctgaattttgcatatattatgcattgtccttgccaactga 23525171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 293
Target Start/End: Complemental strand, 14827602 - 14827515
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaaat 293  Q
    ||||||| ||||||  |||||| ||||| |||| ||||| || ||||||||||||| | |||||||| ||| ||| ||||| ||||||    
T  14827602 ttttttgtggtggccggggtttaaaccccggatcttgcatattttatgcattgtccataccaactgagctaagctcacgagaacaaat 14827515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 289
Target Start/End: Original strand, 35863797 - 35863880
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggac 289  Q
    ||||||| ||||||   |||||||||||  ||  ||||| |||||||| ||||||||| |||||||| ||| ||||||||||||    
T  35863797 ttttttgtggtggccgaggtttgaaccccagaccttgcatatattatgtattgtccttaccaactgagctaagcttacgaggac 35863880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 41817568 - 41817521
Alignment:
Q  214 ggtggctagggtttgaaccctggattttgcagatattatgcattgtcc 261  Q
    |||||||||||||||||||| |||  ||||| ||||||||||||||||    
T  41817568 ggtggctagggtttgaaccccggaccttgcatatattatgcattgtcc 41817521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 229 - 295
Target Start/End: Complemental strand, 3100275 - 3100209
Alignment:
Q  229 aaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaaatca 295  Q
    ||||||||| |||||| || |||||||||||||   |||||||| ||| ||| ||||||||||||||    
T  3100275 aaccctggactttgcatatgttatgcattgtccacaccaactgagctaagctcacgaggacaaatca 3100209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 10922308 - 10922358
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactga 272  Q
    |||||||||||| |||| ||||| |||||||||||||||| | ||||||||    
T  10922308 gggtttgaaccccggatcttgcatatattatgcattgtccctaccaactga 10922358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 16980372 - 16980422
Alignment:
Q  240 ttgcagatattatgcattgtccttgccaactgaactacgcttacgaggaca 290  Q
    ||||| |||||||||||||||||| |||||||| ||| ||| |||||||||    
T  16980372 ttgcatatattatgcattgtccttaccaactgagctaagctcacgaggaca 16980422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 292
Target Start/End: Original strand, 52904143 - 52904213
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaaa 292  Q
    ||||||||||||  ||  ||||| |||||||||||||||||| |||||||| |||  || |||||||||||    
T  52904143 gggtttgaacccccgacattgcatatattatgcattgtccttaccaactgagctaacctcacgaggacaaa 52904213  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 16792974 - 16793043
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaa 291  Q
    ||||||||||||||||  ||||| |||||||||||||||  | |||||||  ||| ||| ||||||||||    
T  16792974 gggtttgaaccctggaccttgcatatattatgcattgtctataccaactgtgctaagctcacgaggacaa 16793043  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 290
Target Start/End: Complemental strand, 13286207 - 13286124
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggaca 290  Q
    ||||||||||||||  |||||||||||| |||| ||||| |||||||||||||||  | |||||||| ||| ||| |||||||||    
T  13286207 ttttttgcggtggccggggtttgaaccc-ggatcttgcatatattatgcattgtctataccaactgagctaagctcacgaggaca 13286124  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 15020830 - 15020754
Alignment:
Q  214 ggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggaca 290  Q
    |||||| ||||||||||||| |||| ||||| ||||||| |||||||| | ||||||||| || ||| |||||||||    
T  15020830 ggtggccagggtttgaaccccggatcttgcatatattatacattgtccataccaactgaattaagctaacgaggaca 15020754  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 289
Target Start/End: Complemental strand, 18533745 - 18533663
Alignment:
Q  207 tttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggac 289  Q
    |||||| ||||| | |||||||||||| |||| ||||| |||||||||||||| ||| ||||||||   | ||||||||||||    
T  18533745 tttttgtggtggttggggtttgaaccccggatcttgcatatattatgcattgttcttaccaactgagtcaagcttacgaggac 18533663  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 290
Target Start/End: Complemental strand, 36781485 - 36781401
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggaca 290  Q
    |||||||||||||   |||||| ||||| ||| |||||| |||||||| ||||||||| |||||||| ||| ||| |||| ||||    
T  36781485 ttttttgcggtggtcggggtttaaaccccggactttgcatatattatgtattgtccttaccaactgagctaggctcacgatgaca 36781401  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 273
Target Start/End: Original strand, 7968925 - 7968991
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaa 273  Q
    ||||||| ||||||| || ||||||||| |||  ||||| |||||||||||||||||| |||||||||    
T  7968925 ttttttgtggtggctgggatttgaaccc-ggaccttgcatatattatgcattgtccttaccaactgaa 7968991  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 290
Target Start/End: Original strand, 8999873 - 8999960
Alignment:
Q  204 tattttttgcggtggctagggtttgaaccctggattttgcagatattatgca-ttgtccttgccaactgaactacgcttacgaggaca 290  Q
    ||||||||| |||||   |||||||||||||||| |||||| |||||||||| |||||  | |||||||| ||| ||| |||||||||    
T  8999873 tattttttgtggtggtcggggtttgaaccctggactttgcatatattatgcatttgtctctaccaactgagctaagctcacgaggaca 8999960  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 27587282 - 27587215
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggac 289  Q
    |||||||||||| |||  ||||| |||| ||||||||||||| |||||||| ||| ||| ||||||||    
T  27587282 gggtttgaaccccggaccttgcatatatcatgcattgtccttaccaactgagctaagctcacgaggac 27587215  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 292
Target Start/End: Complemental strand, 444490 - 444405
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaaa 292  Q
    ||||||| ||||||  |||||| ||||| |||  ||||| |||||||||||||||||| |||| ||| ||| |||| ||||||||||    
T  444490 ttttttgtggtggccggggtttaaaccccggaccttgcatatattatgcattgtccttaccaattgagctaagctt-cgaggacaaa 444405  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 261
Target Start/End: Complemental strand, 8881350 - 8881297
Alignment:
Q  208 ttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtcc 261  Q
    ||||| ||||||  ||||||||||||||||  ||||| ||||||||||||||||    
T  8881350 ttttgtggtggccggggtttgaaccctggaccttgcatatattatgcattgtcc 8881297  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 23816833 - 23816780
Alignment:
Q  240 ttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaaat 293  Q
    ||||| |||||||||||| ||||| |||||||| ||| ||| ||||||||||||    
T  23816833 ttgcatatattatgcattatccttaccaactgagctaagctcacgaggacaaat 23816780  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 221 - 292
Target Start/End: Complemental strand, 31971591 - 31971520
Alignment:
Q  221 agggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaaa 292  Q
    ||||||||||||  |||  ||||| |||||||||||||||||| ||||||||  || |||||||||||||||    
T  31971591 agggtttgaacctcggaccttgcatatattatgcattgtccttaccaactgagttaagcttacgaggacaaa 31971520  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 289
Target Start/End: Original strand, 7082984 - 7083059
Alignment:
Q  214 ggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggac 289  Q
    ||||||| |||||||||| |  ||| ||||| |||||||||||||||||| |||| ||| ||| ||| ||||||||    
T  7082984 ggtggctggggtttgaactccagatcttgcatatattatgcattgtccttaccaattgagctaagctcacgaggac 7083059  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 261
Target Start/End: Original strand, 32524420 - 32524459
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtcc 261  Q
    |||||||||||||||| |||||| ||||||||||||||||    
T  32524420 gggtttgaaccctggactttgcatatattatgcattgtcc 32524459  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 33824941 - 33824866
Alignment:
Q  223 ggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaaatcagaa 298  Q
    ||||||||||| |||  ||||| ||||||||||||||||||  ||||||| ||| | | |||| ||||||||||||    
T  33824941 ggtttgaaccccggaccttgcatatattatgcattgtccttatcaactgagctaagatcacgaagacaaatcagaa 33824866  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 9111108 - 9111039
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaa 291  Q
    ||||| |||||| |||  ||||| |||||||||||||| | | |||||||||||| ||| ||||||||||    
T  9111108 gggttcgaaccccggaccttgcatatattatgcattgttcataccaactgaactaagctcacgaggacaa 9111039  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 13044638 - 13044683
Alignment:
Q  246 atattatgcattgtccttgccaactgaactacgcttacgaggacaa 291  Q
    |||||||||||||||| |||||||||||||| ||| |||| |||||    
T  13044638 atattatgcattgtccatgccaactgaactaagctaacgacgacaa 13044683  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 259
Target Start/End: Original strand, 18253323 - 18253376
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgt 259  Q
    ||||||| ||||| | ||||||||||||||||  ||||| ||||||||||||||    
T  18253323 ttttttgtggtggatggggtttgaaccctggaccttgcatatattatgcattgt 18253376  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 26181700 - 26181769
Alignment:
Q  207 tttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaacta 276  Q
    |||||| |||| | |||||| |||| || ||| ||| |||||||||||||||||||| | ||||||||||    
T  26181700 tttttgtggtgtccagggttcgaactctagatcttgaagatattatgcattgtccttactaactgaacta 26181769  T

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Target: scaffold0011 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 185324 - 185255
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaa 291  Q
    |||||||||||| |||| ||||| || ||||||||||||| | |||||||| ||| ||| ||||||||||    
T  185324 gggtttgaaccccggatcttgcatattttatgcattgtccataccaactgagctaagctcacgaggacaa 185255  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 239868 - 239801
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggac 289  Q
    |||||||||| | ||| |||||| |||||||||||||||||| |||||||| |||  || ||||||||    
T  239868 gggtttgaactccggactttgcatatattatgcattgtccttaccaactgagctaaactcacgaggac 239801  T

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Target: scaffold0238 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 25450 - 25400
Alignment:
Q  222 gggtttgaaccctggattttgcagatattatgcattgtccttgccaactga 272  Q
    ||||| ||||||||||  ||||| |||||||||||||||||| ||||||||    
T  25450 gggttcgaaccctggaccttgcatatattatgcattgtccttaccaactga 25400  T

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Target: scaffold0040 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 292
Target Start/End: Complemental strand, 56860 - 56775
Alignment:
Q  206 ttttttgcggtggctagggtttgaaccctggattttgcagatattatgcattgtccttgccaactgaactacgcttacgaggacaaa 292  Q
    ||||||| ||||||| ||||||||| | ||||  ||||| ||||||| |||||||| | |||||||| ||| ||| |||||||||||    
T  56860 ttttttgtggtggctggggtttgaaac-tggaccttgcatatattatacattgtccataccaactgagctaagctcacgaggacaaa 56775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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