View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2986_high_1 (Length: 588)

Name: NF2986_high_1
Description: NF2986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2986_high_1
NF2986_high_1
[»] chr3 (10 HSPs)
chr3 (9-250)||(32836468-32836702)
chr3 (449-572)||(32836956-32837079)
chr3 (315-444)||(32836780-32836909)
chr3 (184-234)||(45441713-45441763)
chr3 (335-416)||(9176821-9176902)
chr3 (422-471)||(32826174-32826223)
chr3 (315-387)||(37341420-37341492)
chr3 (335-394)||(32847647-32847706)
chr3 (339-389)||(26749037-26749086)
chr3 (333-385)||(13826028-13826079)
[»] chr6 (3 HSPs)
chr6 (335-394)||(17930201-17930260)
chr6 (335-387)||(5107148-5107200)
chr6 (320-372)||(10788583-10788635)
[»] chr7 (3 HSPs)
chr7 (315-386)||(22519156-22519227)
chr7 (315-386)||(31457366-31457437)
chr7 (336-386)||(36298898-36298948)
[»] chr8 (2 HSPs)
chr8 (333-386)||(31006127-31006180)
chr8 (320-386)||(6870586-6870652)
[»] chr5 (1 HSPs)
chr5 (337-386)||(2209654-2209703)
[»] chr4 (4 HSPs)
chr4 (333-384)||(42555433-42555484)
chr4 (339-386)||(40714808-40714855)
chr4 (315-377)||(17120273-17120335)
chr4 (336-386)||(51357292-51357342)
[»] chr1 (1 HSPs)
chr1 (333-385)||(38264311-38264363)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 32836468 - 32836702
Alignment:
Q  9 gagatgaatgtgtcgcagaatatcaaatctagtgggttatactaaaacagtgaaggttgcacatattctgtggacagaacagaagtgtacgaccatcgca 108  Q
    |||| |||||||||||||||||||||||||   |  |||||||||||||||||||||||||||||||||||||||||     |||||||| |||||||||    
T  32836468 gagaagaatgtgtcgcagaatatcaaatctcacg--ttatactaaaacagtgaaggttgcacatattctgtggacag-----aagtgtaccaccatcgca 32836560  T
Q  109 gcaacatgcagaattctagtaaagaatgacatgagatattcaagaacataaatatactttgacattgacactgaattatatcaccctacaaatgcaagca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32836561 gcaacatgcagaattctagtaaagaatgacatgagatattcaagaacataaatatactttgacattgacactgaattatatcaccctacaaatgcaagca 32836660  T
Q  209 ctaccaacttcaggtcgaaaaaggacatcaatatctcattaa 250  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  32836661 ctaccaacttctggtcgaaaaaggacatcaatatctcattaa 32836702  T

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Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 449 - 572
Target Start/End: Original strand, 32836956 - 32837079
Alignment:
Q  449 caaagtcttgaaaaaattgttttgtccaactcaaacatcaacttttgttacaaaaatgtctattgtacatttgtattggcaaagacttggtataaaacca 548  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  32836956 caaagtcttgaaaaaattgttttgtccaactcaaacatcaacttttgttacaaaaatgtcttgtgtacatttgtattggcaaagacttggtataaaacca 32837055  T
Q  549 ttggcatagaaccgatcatataac 572  Q
    ||||||||||| ||||||||||||    
T  32837056 ttggcatagaatcgatcatataac 32837079  T

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Target: chr3; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 315 - 444
Target Start/End: Original strand, 32836780 - 32836909
Alignment:
Q  315 gttccttgattgaaaaagagcataaataaagtttatcatattcaacaaaagcaaagcttcttgattcaacaaatttgaggttggtaagattatttatgta 414  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  32836780 gttccttgattgaaaaaaagcataaataaagttcatcatattcaacaaaagtaaagcttcttgattcaacaaatttaaggttggtaagattatttatgta 32836879  T
Q  415 atctaaaaatttatcgcaaaaacaaagatc 444  Q
    || |||||||||||||||||||||||||||    
T  32836880 atttaaaaatttatcgcaaaaacaaagatc 32836909  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 45441713 - 45441763
Alignment:
Q  184 ttatatcaccctacaaatgcaagcactaccaacttcaggtcgaaaaaggac 234  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45441713 ttatatcaccctacaaatgcaagcactgccaacttcaggtcgaaaaaggac 45441763  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 335 - 416
Target Start/End: Original strand, 9176821 - 9176902
Alignment:
Q  335 cataaataaagtttatcatattcaacaaaagcaaagcttcttgattcaacaaatttgaggttggtaagattatttatgtaat 416  Q
    ||||||||||||  |||||||||||||||| || | ||||||||||||| ||| |||||  |||||||||||||||||||||    
T  9176821 cataaataaagtccatcatattcaacaaaaacatatcttcttgattcaaaaaaattgagagtggtaagattatttatgtaat 9176902  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 422 - 471
Target Start/End: Original strand, 32826174 - 32826223
Alignment:
Q  422 aatttatcgcaaaaacaaagatcccttcaaagtcttgaaaaaattgtttt 471  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32826174 aatttatcgtaaaaacaaagatcccttcaaagtcttgaaaaaattgtttt 32826223  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 387
Target Start/End: Complemental strand, 37341492 - 37341420
Alignment:
Q  315 gttccttgattgaaaaagagcataaataaagtttatcatattcaacaaaagcaaagcttcttgattcaacaaa 387  Q
    ||||||||||| ||||| | |||||||||||||||||| ||| |||||||  |||| | ||||||||||||||    
T  37341492 gttccttgattcaaaaaaaacataaataaagtttatcacatttaacaaaaataaagttccttgattcaacaaa 37341420  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 335 - 394
Target Start/End: Original strand, 32847647 - 32847706
Alignment:
Q  335 cataaataaagtttatcatattcaacaaaagcaaagcttcttgattcaacaaatttgagg 394  Q
    |||||||||| || ||||||||| |||||| ||||| ||||| |||||||||||||||||    
T  32847647 cataaataaaattcatcatattccacaaaaacaaagtttcttaattcaacaaatttgagg 32847706  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 389
Target Start/End: Original strand, 26749037 - 26749086
Alignment:
Q  339 aataaagtttatcatattcaacaaaagcaaagcttcttgattcaacaaatt 389  Q
    ||||||||||||||||||| ||||||  ||| |||||||||||||||||||    
T  26749037 aataaagtttatcatattcgacaaaa-taaaacttcttgattcaacaaatt 26749086  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 385
Target Start/End: Original strand, 13826028 - 13826079
Alignment:
Q  333 agcataaataaagtttatcatattcaacaaaagcaaagcttcttgattcaaca 385  Q
    ||||||| ||||||| |||||||||||||||| |||||| ||||| |||||||    
T  13826028 agcataagtaaagttcatcatattcaacaaaaacaaagc-tcttgcttcaaca 13826079  T

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Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 335 - 394
Target Start/End: Complemental strand, 17930260 - 17930201
Alignment:
Q  335 cataaataaagtttatcatattcaacaaaagcaaagcttcttgattcaacaaatttgagg 394  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||    
T  17930260 cataaataaagttcatcatattcaacaaaaacaaagcttcttgattcaagaaatttgagg 17930201  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 387
Target Start/End: Original strand, 5107148 - 5107200
Alignment:
Q  335 cataaataaagtttatcatattcaacaaaagcaaagcttcttgattcaacaaa 387  Q
    ||||||| ||||| |||||||| ||||||| ||||| | ||||||||||||||    
T  5107148 cataaatcaagttcatcatatttaacaaaaacaaagttccttgattcaacaaa 5107200  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 10788583 - 10788635
Alignment:
Q  320 ttgattgaaaaagagcataaataaagtttatcatattcaacaaaagcaaagct 372  Q
    |||||| || || ||||||| ||||||| |||||||||||||||| |||||||    
T  10788583 ttgatttaacaaaagcataagtaaagttcatcatattcaacaaaaacaaagct 10788635  T

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Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 315 - 386
Target Start/End: Complemental strand, 22519227 - 22519156
Alignment:
Q  315 gttccttgattgaaaaagagcataaataaagtttatcatattcaacaaaagcaaagcttcttgattcaacaa 386  Q
    |||| |||||| || || |||||||||||||||||||||||||||||||| ||||| |||||| ||||||||    
T  22519227 gttctttgatttaacaaaagcataaataaagtttatcatattcaacaaaaacaaagtttcttgtttcaacaa 22519156  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 386
Target Start/End: Original strand, 31457366 - 31457437
Alignment:
Q  315 gttccttgattgaaaaagagcataaataaagtttatcatattcaacaaaagcaaagcttcttgattcaacaa 386  Q
    |||| |||||| || || || |||||||||||| |||||||||||||||| |||| ||||||| ||||||||    
T  31457366 gttctttgatttaacaaaagtataaataaagttcatcatattcaacaaaaacaaaacttcttgcttcaacaa 31457437  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 36298898 - 36298948
Alignment:
Q  336 ataaataaagtttatcatattcaacaaaagcaaagcttcttgattcaacaa 386  Q
    |||||||||| | |||||||||||||||| |||||||| ||| ||||||||    
T  36298898 ataaataaagctcatcatattcaacaaaaacaaagcttattgcttcaacaa 36298948  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 333 - 386
Target Start/End: Original strand, 31006127 - 31006180
Alignment:
Q  333 agcataaataaagtttatcatattcaacaaaagcaaagcttcttgattcaacaa 386  Q
    ||||||||||||| |||||||||||||||||| ||||| |||||| ||||||||    
T  31006127 agcataaataaagattatcatattcaacaaaaacaaagtttcttgcttcaacaa 31006180  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 386
Target Start/End: Complemental strand, 6870652 - 6870586
Alignment:
Q  320 ttgattgaaaaagagcataaataaagtttatcatattcaacaaaagcaaagcttcttgattcaacaa 386  Q
    |||||| || || ||||||||||||| | |||||||||||||||| |||| ||||||| || |||||    
T  6870652 ttgatttaacaaaagcataaataaagctcatcatattcaacaaaaacaaaacttcttgctttaacaa 6870586  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 2209654 - 2209703
Alignment:
Q  337 taaataaagtttatcatattcaacaaaagcaaagcttcttgattcaacaa 386  Q
    ||||||||| |||||||||||||||||| |||||||||||| ||||||||    
T  2209654 taaataaagcttatcatattcaacaaaaacaaagcttcttgcttcaacaa 2209703  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 333 - 384
Target Start/End: Original strand, 42555433 - 42555484
Alignment:
Q  333 agcataaataaagtttatcatattcaacaaaagcaaagcttcttgattcaac 384  Q
    ||||||||||||| |||||||||||||||||| |||||||| ||| ||||||    
T  42555433 agcataaataaaggttatcatattcaacaaaaacaaagcttattgcttcaac 42555484  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 386
Target Start/End: Complemental strand, 40714855 - 40714808
Alignment:
Q  339 aataaagtttatcatattcaacaaaagcaaagcttcttgattcaacaa 386  Q
    ||||||| | |||||||||||||||| |||||||||||| ||||||||    
T  40714855 aataaagctcatcatattcaacaaaaacaaagcttcttgcttcaacaa 40714808  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 377
Target Start/End: Complemental strand, 17120335 - 17120273
Alignment:
Q  315 gttccttgattgaaaaagagcataaataaagtttatcatattcaacaaaagcaaagcttcttg 377  Q
    |||| |||||| || || ||||||||||||| | |||||||||||||||| ||||| ||||||    
T  17120335 gttctttgatttaacaaaagcataaataaagctcatcatattcaacaaaaacaaagtttcttg 17120273  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 386
Target Start/End: Original strand, 51357292 - 51357342
Alignment:
Q  336 ataaataaagtttatcatattcaacaaaagcaaagcttcttgattcaacaa 386  Q
    |||||||||| | |||||||||||||||| |||||||| ||| ||||||||    
T  51357292 ataaataaagctcatcatattcaacaaaaacaaagcttattgtttcaacaa 51357342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 385
Target Start/End: Complemental strand, 38264363 - 38264311
Alignment:
Q  333 agcataaataaagtttatcatattcaacaaaagcaaagcttcttgattcaaca 385  Q
    ||||||||||||| |||||||||||||  ||| ||||| |||||| |||||||    
T  38264363 agcataaataaagattatcatattcaattaaaacaaagtttcttgcttcaaca 38264311  T

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