View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2986_high_7 (Length: 300)
Name: NF2986_high_7
Description: NF2986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2986_high_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 300
Target Start/End: Complemental strand, 22049390 - 22049102
Alignment:
| Q |
12 |
atgaaaccatggagtgctgtactaataaaatacatttcctgggataattgtctctttaagataatcaaacaattgaattcagatggttaatgagctccac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22049390 |
atgaaaccatggagtgctgtactaataaaatacatttcctgggataattgtctctttaagataatcaaacaattgaattcagatggttaatgagttccac |
22049291 |
T |
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| Q |
112 |
caaaataacgatttgtttagaagaatttgagtttgatcctcgagtgaagcaatttttgatcaaactttacttacattttggtcgaactctaaattattag |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||| |||||||| |||||||||||| |||| |
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| T |
22049290 |
caaaataacgatttgtttagaagaatttgagtttgatcctcaagtggagcaatttttgaccaaactttacttatattttggttgaactctaaatttttag |
22049191 |
T |
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| Q |
212 |
ggtcannnnnnnaaaaaactagagggttaacataaaaacatacacaagttttaagatagtctttgaaaaatcaaggcttggtttacttt |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
22049190 |
ggtccttttttttaaaaactagagggttaacataaaaacatacacaagttttaagatagtctttgaaaaattaaggcttggtttacttt |
22049102 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 36660617 - 36660660
Alignment:
| Q |
71 |
gataatcaaacaattgaattcagatggttaatgagctccaccaa |
114 |
Q |
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| T |
36660617 |
gataatcaaacaattgaactcaagtggttaatgagctccaccaa |
36660660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 35947876 - 35947832
Alignment:
| Q |
72 |
ataatcaaacaattgaattcagatggttaatgagctccaccaaaa |
116 |
Q |
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| T |
35947876 |
ataaccaagcaattgaattcagatggttaatgagtttcaccaaaa |
35947832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 39634358 - 39634402
Alignment:
| Q |
161 |
caatttttgatcaaactttacttacattttggtcgaactctaaat |
205 |
Q |
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| T |
39634358 |
caatttttggtcaaactttacttacctcttggtcgaactccaaat |
39634402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 8189970 - 8190010
Alignment:
| Q |
172 |
caaactttacttacattttggtcgaactctaaattattagg |
212 |
Q |
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| T |
8189970 |
caaactttacttaccttttgaccgaactctaaattattagg |
8190010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 35383252 - 35383292
Alignment:
| Q |
161 |
caatttttgatcaaactttacttacattttggtcgaactct |
201 |
Q |
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| T |
35383252 |
caattttttatcagactttacttaccttttggtcgaactct |
35383292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 38276125 - 38276194
Alignment:
| Q |
73 |
taatcaaacaattgaattcagatggttaatgagctccaccaaaataacgatttgtttagaagaatttgagtt |
144 |
Q |
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| T |
38276125 |
taatcaaacaattgaactcaagtagttaatgagcttcacc--aatgacgatttgtttaaaagaacttgagtt |
38276194 |
T |
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