View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2986_low_2 (Length: 495)
Name: NF2986_low_2
Description: NF2986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2986_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 30707726 - 30707242
Alignment:
| Q |
1 |
caaatataaataaacgaggttgtttggcatatgaacacttccatgagatgataaacgatctctttcagtttaaccagaaatccttgattcaaattcagcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30707726 |
caaatataaataaacgaggttgtttggcatatgaacacttgcatgagatgataaacgatctctttcagtttaaccagaaatccttgattcaaattcagcc |
30707627 |
T |
|
| Q |
101 |
atgcgaatacagtgttaaatttcttgagagagagtttcgccactcctcgcagtcccacccaactcgagggattagtcactgcaattgcgcgcaaaggata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30707626 |
atgcgaatacagtgttaaatttcttgagagagagtttcaccactcctcgcagtcccacccaactcgagggattagtcactgcaattgtgcgcaaaggata |
30707527 |
T |
|
| Q |
201 |
tccggttcacaacaacaaaacaaacacgttctctgtgtaagagaactcacaaaaacaataatggagaaccaggagagcagtatgagaggctcaagatggt |
300 |
Q |
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| T |
30707526 |
tccggttcacaacaacaaaacaaacacgttctccgtgtaagagaactcacaaaaacaacaatggagaaccaggagagcagtatgagaggctcaagatggt |
30707427 |
T |
|
| Q |
301 |
ctctcaagggaactactgctctagttactggtggaactcgtggaatcggtcatgctgtggtggaggaactagctgagtttggtgccacagtgttcacttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30707426 |
ctctcaagggaactactgctctagttactggtggaactcgtggaatcggtcatgctgtggtggaggaactagctgagtttggtgccacagtgttcacttg |
30707327 |
T |
|
| Q |
401 |
ctctaggaatgaagaagagctgaataaatgcttaaatgagtggaaagagaagggtttttctgtctatggatcggtctgtgctgct |
485 |
Q |
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| T |
30707326 |
ctctaggaatgaagaagagctgaataaatgcttaaatgagtggaaagagaagggtttttctgtctatggatcggtttgtgatgct |
30707242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 247 - 472
Target Start/End: Complemental strand, 30719846 - 30719621
Alignment:
| Q |
247 |
tcacaaaaacaataatggagaaccaggagagcagtatgagaggctcaagatggtctctcaagggaactactgctctagttactggtggaactcgtggaat |
346 |
Q |
| |
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|||||||||||| ||||| |||| |||||||||| ||| ||||||||||||| ||||||||| |||||||| || || || ||||| |||||||| |
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| T |
30719846 |
tcacaaaaacaagaatggcgaacgcagagagcagtagcagaagctcaagatggtccctcaagggattcactgctctcgtcaccggcggaacacgtggaat |
30719747 |
T |
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| Q |
347 |
cggtcatgctgtggtggaggaactagctgagtttggtgccacagtgttcacttgctctaggaatgaagaagagctgaataaatgcttaaatgagtggaaa |
446 |
Q |
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||| |||||| | ||||| ||||| |||||||||||||||||||| | |||||| |||||||| |||| |||||||||||| ||||||||||||||||| |
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| T |
30719746 |
cggacatgctatcgtggaagaactcgctgagtttggtgccacagtctacacttgttctaggaaccaagaggagctgaataaacgcttaaatgagtggaaa |
30719647 |
T |
|
| Q |
447 |
gagaagggtttttctgtctatggatc |
472 |
Q |
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||||| ||||||||||| |||||||| |
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| T |
30719646 |
gagaaaggtttttctgtttatggatc |
30719621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 289 - 472
Target Start/End: Complemental strand, 30702253 - 30702070
Alignment:
| Q |
289 |
gctcaagatggtctctcaagggaactactgctctagttactggtggaactcgtggaatcggtcatgctgtggtggaggaactagctgagtttggtgccac |
388 |
Q |
| |
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||||||||||||| ||||||||| || ||||| || || || ||||||||||| |||||||||||| | || |||||||| |||||||||||||| | |
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| T |
30702253 |
gctcaagatggtccctcaagggattcacagctcttgtcaccggcggaactcgtgggatcggtcatgctatcgtagaggaacttgctgagtttggtgctat |
30702154 |
T |
|
| Q |
389 |
agtgttcacttgctctaggaatgaagaagagctgaataaatgcttaaatgagtggaaagagaagggtttttctgtctatggatc |
472 |
Q |
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||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |
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| T |
30702153 |
agtgtacacttgttctaggaatgaagaagaattgaataaatgcttaaatgagtggaaggagaaaggtttttctgtttatggatc |
30702070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 30796994 - 30797047
Alignment:
| Q |
290 |
ctcaagatggtctctcaagggaactactgctctagttactggtggaactcgtgg |
343 |
Q |
| |
|
|||||||||||| ||||| |||| |||||||| || ||||||||||||||||| |
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| T |
30796994 |
ctcaagatggtccctcaaaggaaagactgctctcgtcactggtggaactcgtgg |
30797047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 43621338 - 43621281
Alignment:
| Q |
163 |
ctcgagggattagtcactgcaattgcgcgcaaaggatatccggttcacaacaacaaaa |
220 |
Q |
| |
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| T |
43621338 |
ctcgagggattagtctctgtagttgcgcgcagaggatacccgattcacaacaaaaaaa |
43621281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 27763835 - 27763879
Alignment:
| Q |
163 |
ctcgagggattagtcactgcaattgcgcgcaaaggatatccggtt |
207 |
Q |
| |
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||||||||||||||| | ||| ||||||||| ||||||||||||| |
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| T |
27763835 |
ctcgagggattagtctccgcagttgcgcgcagaggatatccggtt |
27763879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 46864206 - 46864242
Alignment:
| Q |
164 |
tcgagggattagtcactgcaattgcgcgcaaaggata |
200 |
Q |
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|||||||||||||| ||||| |||||||||||||||| |
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| T |
46864206 |
tcgagggattagtctctgcagttgcgcgcaaaggata |
46864242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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