View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2986_low_3 (Length: 456)
Name: NF2986_low_3
Description: NF2986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2986_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 206 - 444
Target Start/End: Original strand, 6562134 - 6562372
Alignment:
| Q |
206 |
gggtagctagttatggctacattatcatcaaagactgtaacttgtcattagcccagaaaatgaatactactaaacacggcaaaaacaaagtcaacactaa |
305 |
Q |
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| T |
6562134 |
gggtggctagttatggctacattatcatcaaagattgtaacttgtcattagcccagaaaatgaatactactaaacacggcaaaaacaaagtcaacactaa |
6562233 |
T |
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| Q |
306 |
aaatggaagtagaaaacaacaacattgttagttagtgacaaggaatctcaccgagaaagttgatgatgtttggttagtaagaaaattgttgggaaacaaa |
405 |
Q |
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| T |
6562234 |
aaatggaagtagaaaacaacaacattgttagttagtgacaaggaatctcaccgagaaagttgatgatgtttggttagtaagaaaattgttgggaaacaaa |
6562333 |
T |
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| Q |
406 |
aaacacggaaatagaaacggcaccgaatagagagaggtg |
444 |
Q |
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| T |
6562334 |
aaacacggaaatagaaacggcaccgaatagagagaggtg |
6562372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 10 - 175
Target Start/End: Original strand, 6561938 - 6562103
Alignment:
| Q |
10 |
aaaagaaaaggaattgtactatatatatcttaacctgccaagtttcttgtgtttacgagagaatccgaacatctttactcttcttgttcaaaagctcaaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6561938 |
aaaagaaaaggaattgtactatatatatcttaacctgccaagtttcttgtgtttacgagagaatccgaacatctttactcttcttgttcaaaagctcaaa |
6562037 |
T |
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| Q |
110 |
tcagaggtagcttcaactacatgaaatgaaacacatcatatgaaaaatcacactttagtgaagaag |
175 |
Q |
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| T |
6562038 |
tcagaggtagcttcaactacatgaaatgaaacacatcatatgaaaaatcacactttagtgaagaag |
6562103 |
T |
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