View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2986_low_4 (Length: 370)

Name: NF2986_low_4
Description: NF2986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2986_low_4
NF2986_low_4
[»] chr1 (2 HSPs)
chr1 (1-357)||(31116341-31116694)
chr1 (1-357)||(31109277-31109628)
[»] chr3 (4 HSPs)
chr3 (79-357)||(16077638-16077915)
chr3 (4-84)||(16076251-16076331)
chr3 (4-94)||(43453480-43453570)
chr3 (1-95)||(42020802-42020896)
[»] chr6 (3 HSPs)
chr6 (1-95)||(10965268-10965362)
chr6 (10-63)||(709369-709422)
chr6 (1-66)||(2138515-2138580)
[»] chr4 (2 HSPs)
chr4 (2-94)||(21280074-21280166)
chr4 (39-95)||(45140530-45140586)
[»] chr8 (1 HSPs)
chr8 (1-64)||(44376681-44376744)
[»] chr7 (1 HSPs)
chr7 (15-94)||(24873803-24873882)


Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 31116694 - 31116341
Alignment:
Q  1 cggtggactacgataaaaataccaatagattaaacaagtggttcggatttatttaaattaaaagtgggaacatggagaactgctcacattcaatcagttc 100  Q
    ||||||||||||| |||||||||||||||||||| ||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31116694 cggtggactacgagaaaaataccaatagattaaataagtggtacatatttatttaaattaaaagtgggaacatggagaactgctcacattcaatcagatc 31116595  T
Q  101 ctctaatagtttcatttcctatatacgattcgtgtagtattcttcctccataatcagataactgctcttccctcaaaccatcaaatttgaaaatcaaact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31116594 ctctaatagtttcatttcctatatacgattcgtgtagtattcttcctccataatcagataactgctcttccctcaaaccatcaaatttgaaaatcaaact 31116495  T
Q  201 atatgaaccctaaaattaaaaattaaaannnnnnnnnnnnnnnnnnnnaaacaccaattcccctttttcagtccaagatcagactacaaatcaaaatcat 300  Q
    ||||||||||||||||||||||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31116494 atatgaaccctaaaattaaaaattaaaa---tcttcttcttcttcttcaaacaccaattcccctttttcagtccaagatcagactacaaatcaaaatcat 31116398  T
Q  301 caaattgaaagctctcacttgcggcgtttggtgaagcgagggagtggacgtcatctc 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31116397 caaattgaaagctctcacttgcggcgtttggtgaagcgagggagtggacgtcatctc 31116341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 31109277 - 31109628
Alignment:
Q  1 cggtggactacgataaaaataccaatagattaaacaagtggttcggatttatttaaattaaaagtgggaacatggagaactgctcacattcaatcagttc 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||    
T  31109277 cggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaaagtgggaacatgtagagctgctcacattcaatcagatc 31109376  T
Q  101 ctctaatagtttcatttcctatatacgattcgtgtagtattcttcctccataatcagataactgctctt-ccctcaaaccatcaaatttgaaaatcaaac 199  Q
    ||||||||||||||   | ||| |||||||||||||||||||||  |  |||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  31109377 ctctaatagtttcacaccttatgtacgattcgtgtagtattcttggtttataatcagataactgctcttcccctcaaaccatcaaatttgaaaaccaaac 31109476  T
Q  200 tatatgaaccctaaaattaaaaattaaaannnnnnnnnnnnnnnnnnnnaaacaccaattcccctttttcagtccaagatcagactacaaatcaaaatca 299  Q
    |||||||||||||||||||||||||||||                    |||||||| |||||  ||||||||||||||||| |||||||||||||||||    
T  31109477 tatatgaaccctaaaattaaaaattaaaa------tcttcttcttcttcaaacaccagttccctcttttcagtccaagatcaaactacaaatcaaaatca 31109570  T
Q  300 tcaaattgaaagctctcacttgcggcgtttggtgaagcgagggagtggacgtcatctc 357  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  31109571 tcaaattgaaagctctcacttgcggcgtttggtgaagtgagggagtcgacgtcatctc 31109628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 5e-75; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 79 - 357
Target Start/End: Original strand, 16077638 - 16077915
Alignment:
Q  79 actgctcacattcaatcagttcctctaatagtttcatttcctatatacgattcgtgtagta-ttcttcctccataatca------gataactgctcttcc 171  Q
    ||||||||||||||||||| ||||||||||||||||   ||||| |||||||||||||||| |||||| ||||||||||      |||||||||||||||    
T  16077638 actgctcacattcaatcagatcctctaatagtttcacaccctatgtacgattcgtgtagtaattcttcgtccataatcataatcagataactgctcttcc 16077737  T
Q  172 c-tcaaaccatcaaatttgaaaatcaaactatatgaaccctaaaattaaaaattaaaannnnnnnnnnnnnnnnnnnnaaacaccaattcccctttttca 270  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    ||||||||||||||||||||||    
T  16077738 cctcaaaccatcaaatttgaaaatcaaactatatgaaccctaaaattaaaaattaaaatcttcttcttc---------aaacaccaattcccctttttca 16077828  T
Q  271 gtccaagatcagactacaaatcaaaatcatcaaattgaaagctctcacttgcggcgtttggtgaagcgagggagtggacgtcatctc 357  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  16077829 gtccaagatcagaatacaaatcaaattcatcaaattgaaagctctcacttgcggcgtttggtgaagtgagggagtcgacgtcatctc 16077915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 16076251 - 16076331
Alignment:
Q  4 tggactacgataaaaataccaatagattaaacaagtggttcggatttatttaaattaaaagtgggaacatggagaactgct 84  Q
    ||||| |||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||| || ||| |||||||||    
T  16076251 tggaccacgagaaaaatatcaatagattaaacaagtggttcagatttatttaaattaaaagtggaaaaatgtagaactgct 16076331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 43453480 - 43453570
Alignment:
Q  4 tggactacgataaaaataccaatagattaaacaagtggttcggatttatttaaattaaaagtgggaacatggagaactgctcacattcaat 94  Q
    ||||| |||| |||||||||||||||||||| |  ||||||  ||||||||||||||||| |||||||||| | |||| ||||||||||||    
T  43453480 tggaccacgagaaaaataccaatagattaaatagatggttcaaatttatttaaattaaaattgggaacatgtacaactactcacattcaat 43453570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 42020896 - 42020802
Alignment:
Q  1 cggtggactacgataaaaataccaatagattaaacaagtggttcggatttatttaaattaaaagtgggaacatggagaactgctcacattcaatc 95  Q
    |||||||  |||| |||||||||||||||||||| |  |||||| |||||||| |||  || ||||  |||||| | |||| |||||||||||||    
T  42020896 cggtggatcacgaaaaaaataccaatagattaaatagatggttcagatttattaaaagcaatagtgtaaacatgtacaactactcacattcaatc 42020802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 10965268 - 10965362
Alignment:
Q  1 cggtggactacgataaaaataccaatagattaaacaagtggttcggatttatttaaattaaaagtgggaacatggagaactgctcacattcaatc 95  Q
    |||||||| | || |||||||||| ||||||||| |  ||||||  ||||||||||||||||||||| |||||| | |||| |||||||||||||    
T  10965268 cggtggaccatgagaaaaataccattagattaaatagatggttcaaatttatttaaattaaaagtggaaacatgtacaactactcacattcaatc 10965362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 709369 - 709422
Alignment:
Q  10 acgataaaaataccaatagattaaacaagtggttcggatttatttaaattaaaa 63  Q
    |||| |||||||||||||||||||| |  |||||| |||||||| |||||||||    
T  709369 acgagaaaaataccaatagattaaatagatggttcagatttattcaaattaaaa 709422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2138515 - 2138580
Alignment:
Q  1 cggtggactacgataaaaataccaatagattaaacaagtggttcggatttatttaaattaaaagtg 66  Q
    |||||||| |||| ||||||||||||| |||||| |  |||||  |||||||| ||||||||||||    
T  2138515 cggtggaccacgagaaaaataccaataaattaaatagatggttgagatttattcaaattaaaagtg 2138580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 21280074 - 21280166
Alignment:
Q  2 ggtggactacgataaaaataccaatagattaaacaagtggttcggatttatttaaattaaaagtgggaacatggagaactgctcacattcaat 94  Q
    |||||||||||| ||||| |||||||||||||| || |||||  |||| ||| |||||||||| | |||||||   ||||  |||||||||||    
T  21280074 ggtggactacgaaaaaaacaccaatagattaaataaatggtttagattcattcaaattaaaagggagaacatgtcaaacttttcacattcaat 21280166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 45140530 - 45140586
Alignment:
Q  39 tggttcggatttatttaaattaaaagtgggaacatggagaactgctcacattcaatc 95  Q
    |||||| |||||||| |||||||||||||||||||| | |||| |||||||| ||||    
T  45140530 tggttcagatttattcaaattaaaagtgggaacatgtacaactactcacatttaatc 45140586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 44376681 - 44376744
Alignment:
Q  1 cggtggactacgataaaaataccaatagattaaacaagtggttcggatttatttaaattaaaag 64  Q
    |||||||| |||| ||||||||||||| |||||| |  |||||| |||||||| ||||||||||    
T  44376681 cggtggaccacgaaaaaaataccaataaattaaatagatggttcagatttattcaaattaaaag 44376744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 24873803 - 24873882
Alignment:
Q  15 aaaaataccaatagattaaacaagtggttcggatttatttaaattaaaagtgggaacatggagaactgctcacattcaat 94  Q
    ||||| |||||||||||||| ||||||||  |||||||| |||||||||| | |||||||   ||||  |||||||||||    
T  24873803 aaaaacaccaatagattaaataagtggtttagatttattcaaattaaaagggagaacatgtcaaacttttcacattcaat 24873882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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