View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2986_low_5 (Length: 361)
Name: NF2986_low_5
Description: NF2986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2986_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 232 - 345
Target Start/End: Original strand, 925289 - 925402
Alignment:
| Q |
232 |
gtagtagatggtggaaaatatcaagagacattgatataagaagatgaagaaatacgaagcaataaagagttttgaagagaatgatgaagatttagaaatg |
331 |
Q |
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| T |
925289 |
gtagtagatggtggaaaatatcaagagacattgatataagaagatgaagaaatacgaagcaataaagagttttgaagagaatgatgaagatttagaaatg |
925388 |
T |
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| Q |
332 |
ggtcatgaaaacca |
345 |
Q |
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|||||||||||||| |
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| T |
925389 |
ggtcatgaaaacca |
925402 |
T |
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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 925100 - 925142
Alignment:
| Q |
42 |
atacttcctaaccctaccatactgcattgtttcttcaagtaag |
84 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
925100 |
atacttcctaaccctaccatattgcattgtttcttcaagtaag |
925142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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