View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2986_low_7 (Length: 327)
Name: NF2986_low_7
Description: NF2986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2986_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 7 - 308
Target Start/End: Complemental strand, 52409613 - 52409312
Alignment:
| Q |
7 |
atatgatgatgagagaaagaactctaattccaacatttgtcttttgggctttccttacattaatcacaccaacacttattctcttgtcagagaattcgaa |
106 |
Q |
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| T |
52409613 |
atatgatgatgagagaaagaactctaattccaacatttgtcttctgggctttccttacattaatcacaccaacacttattctcttgtcagagaattcgaa |
52409514 |
T |
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| Q |
107 |
agccgaccttgaattaaatggtaacaaaccaatcttctaacttagttctaacacttcttattaaccaaaattgatatagttaatttgcaccttaattagg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52409513 |
agccgaccttgaattaaatggtaacaaaccaatcttctaacttagttctaacacttcttattaaccaaaattgatatatttaatttgcaccttaattagg |
52409414 |
T |
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| Q |
207 |
cttgtgtacaattaatctttatgtccaactttgcaggaaatattacagagacaatgaaggtaagaagaatgatcgggcacacacagagtaacatcataag |
306 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52409413 |
cttgtgtacaattaatctttatttccaactttgcaggaaatattacagagacaatgaaggtaagaagaatgatcgggcacacacagagtaacatcataag |
52409314 |
T |
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| Q |
307 |
aa |
308 |
Q |
| |
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|| |
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| T |
52409313 |
aa |
52409312 |
T |
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