View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2987_low_2 (Length: 258)
Name: NF2987_low_2
Description: NF2987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2987_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 38751532 - 38751300
Alignment:
| Q |
16 |
cactttctgaggataatcaaagattaaggagaaagaatttcatgctgttatcagaactcagtcacatgaagaatctttacaatgatattatatatttcat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38751532 |
cactttctgaggataatcaaagattaaggagaaagaatttcatgctgttatcagaactcagtcacatgaagaatctttacaatgatattatatatttcat |
38751433 |
T |
|
| Q |
116 |
tcaaaaccatgtgagtcctgcttctccatttgaacaaagaagcaacaatagtgctactattttgaagcttgttgaattggattcatcatcacctcaatta |
215 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38751432 |
tcaaaaccatgtgagtcctgcttctccctttgaacaaagaagcaacaatagtgctactattttgaagcttgttgaattggattcatcatcacctcaatta |
38751333 |
T |
|
| Q |
216 |
ccaaatgataaagattgtaacagctcttctgtg |
248 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
38751332 |
ccaaatgataaagattgtaatagctcttctgtg |
38751300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 3020917 - 3021148
Alignment:
| Q |
16 |
cactttctgaggataatcaaagattaaggagaaagaatttcatgctgttatcagaactcagtcacatgaagaatctttacaatgatattatatatttcat |
115 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3020917 |
cactctctgaggataatcaaagactaaggagaaagaatttcatgctgttatcagaactcagtcacatgaagaatctttacaatgatattatatatttcat |
3021016 |
T |
|
| Q |
116 |
tcaaaaccatgtgagtcctgcttctccatttgaacaaagaagcaacaatagtgctactattttgaagcttgttgaattggattcatcatcacctcaatta |
215 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3021017 |
tcaaaaccatgtgagtcctgcttctccctttgaataaagaagcaacaatagtgcttctattttgaagcttgttgaattggattcatcatcacctcaatta |
3021116 |
T |
|
| Q |
216 |
ccaaatgataaagattgtaacagctcttctgt |
247 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |
|
|
| T |
3021117 |
ccaaatgataaagattgtaatagctcttctgt |
3021148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University