View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2988_high_5 (Length: 309)

Name: NF2988_high_5
Description: NF2988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2988_high_5
NF2988_high_5
[»] chr1 (14 HSPs)
chr1 (17-146)||(41986817-41986946)
chr1 (234-299)||(34588891-34588956)
chr1 (234-299)||(17305076-17305141)
chr1 (234-299)||(24186701-24186766)
chr1 (234-299)||(34387569-34387634)
chr1 (234-299)||(790138-790203)
chr1 (234-299)||(27842572-27842637)
chr1 (234-299)||(34393674-34393739)
chr1 (249-299)||(22871305-22871355)
chr1 (234-299)||(51236326-51236391)
chr1 (76-146)||(41984645-41984717)
chr1 (262-299)||(8065386-8065423)
chr1 (248-298)||(15649133-15649183)
chr1 (246-298)||(32132032-32132084)
[»] chr3 (14 HSPs)
chr3 (234-299)||(13857116-13857181)
chr3 (234-293)||(10223036-10223095)
chr3 (234-299)||(5931153-5931218)
chr3 (254-299)||(5938084-5938129)
chr3 (250-288)||(50328369-50328407)
chr3 (254-299)||(50309071-50309116)
chr3 (246-284)||(32863593-32863631)
chr3 (246-288)||(40929388-40929430)
chr3 (250-288)||(50875502-50875540)
chr3 (254-298)||(50303230-50303274)
chr3 (255-298)||(13840802-13840845)
chr3 (249-284)||(25639429-25639464)
chr3 (255-298)||(40292926-40292969)
chr3 (249-298)||(33639427-33639476)
[»] chr4 (17 HSPs)
chr4 (234-299)||(40143310-40143375)
chr4 (248-299)||(12389230-12389281)
chr4 (248-299)||(31879542-31879593)
chr4 (238-296)||(46171687-46171745)
chr4 (246-298)||(27510833-27510885)
chr4 (248-299)||(6582396-6582447)
chr4 (246-288)||(2736734-2736776)
chr4 (248-298)||(23516167-23516217)
chr4 (248-298)||(38935827-38935877)
chr4 (249-299)||(47996614-47996663)
chr4 (250-299)||(6009726-6009774)
chr4 (254-298)||(35653323-35653367)
chr4 (255-298)||(23393177-23393220)
chr4 (255-298)||(26463935-26463978)
chr4 (255-298)||(48995770-48995813)
chr4 (255-297)||(6763677-6763719)
chr4 (246-288)||(35258269-35258311)
[»] chr8 (21 HSPs)
chr8 (234-299)||(33691672-33691737)
chr8 (234-299)||(10903037-10903102)
chr8 (234-299)||(14333987-14334052)
chr8 (234-299)||(19147593-19147658)
chr8 (246-288)||(9540016-9540058)
chr8 (246-298)||(10226804-10226856)
chr8 (254-298)||(34360461-34360505)
chr8 (254-299)||(36368563-36368608)
chr8 (246-298)||(26053621-26053673)
chr8 (246-288)||(15255003-15255045)
chr8 (249-294)||(13947140-13947185)
chr8 (234-279)||(17564444-17564489)
chr8 (249-298)||(27114944-27114993)
chr8 (246-298)||(28733986-28734038)
chr8 (246-298)||(42475723-42475775)
chr8 (255-298)||(4885503-4885546)
chr8 (255-294)||(21184105-21184144)
chr8 (255-298)||(40614689-40614732)
chr8 (255-288)||(33238137-33238170)
chr8 (246-299)||(40347007-40347060)
chr8 (238-290)||(19127375-19127427)
[»] chr7 (15 HSPs)
chr7 (234-299)||(45067555-45067620)
chr7 (234-299)||(35086438-35086503)
chr7 (234-299)||(45920078-45920143)
chr7 (246-298)||(11353734-11353786)
chr7 (246-288)||(8550636-8550678)
chr7 (254-298)||(32030342-32030386)
chr7 (255-298)||(31845191-31845234)
chr7 (255-298)||(46400112-46400155)
chr7 (248-298)||(28681913-28681963)
chr7 (248-298)||(33382379-33382429)
chr7 (260-299)||(27856572-27856611)
chr7 (254-289)||(39915710-39915745)
chr7 (255-293)||(22627986-22628024)
chr7 (248-298)||(32745940-32745990)
chr7 (248-294)||(40474435-40474481)
[»] chr5 (8 HSPs)
chr5 (234-299)||(3523204-3523269)
chr5 (234-299)||(31069184-31069249)
chr5 (234-293)||(26818394-26818453)
chr5 (254-288)||(42545740-42545774)
chr5 (246-298)||(33062046-33062098)
chr5 (255-298)||(31508466-31508509)
chr5 (248-298)||(28747606-28747656)
chr5 (261-298)||(8465186-8465223)
[»] scaffold0488 (1 HSPs)
scaffold0488 (234-299)||(7396-7461)
[»] chr6 (6 HSPs)
chr6 (234-299)||(17154308-17154373)
chr6 (234-297)||(33702609-33702672)
chr6 (234-299)||(29092787-29092852)
chr6 (246-298)||(8636168-8636220)
chr6 (248-298)||(27596537-27596587)
chr6 (246-282)||(23111368-23111404)
[»] chr2 (5 HSPs)
chr2 (238-299)||(2154015-2154076)
chr2 (234-299)||(31365541-31365606)
chr2 (238-288)||(5270467-5270517)
chr2 (255-298)||(43177168-43177211)
chr2 (258-298)||(9623950-9623990)
[»] scaffold0064 (1 HSPs)
scaffold0064 (246-298)||(54084-54136)
[»] scaffold0552 (1 HSPs)
scaffold0552 (255-297)||(2285-2327)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 41986817 - 41986946
Alignment:
Q  17 agttgtaattggctttaaaccattaaactcattaagttacttgttatagaagatgaccttatcacccttgatcaattgaaagaaggaataaaagagtttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41986817 agttgtaattggctttaaaccattaaactcattaagttacttgttatagaagatgaccttatcacccttgatcaattgaaagaaggaataaaagagtttt 41986916  T
Q  117 caggttctcattcctaaccatacatataat 146  Q
    ||||||||||||||||||||||||||||||    
T  41986917 caggttctcattcctaaccatacatataat 41986946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 34588956 - 34588891
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34588956 tttcaggtatgcaactaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 34588891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 17305141 - 17305076
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  17305141 tttcatgtatgcaactaaccgaaccgaaccaaagttatggttcggttaaccgttttcttacctatg 17305076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 24186701 - 24186766
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24186701 tttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 24186766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 34387634 - 34387569
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34387634 tttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 34387569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 790138 - 790203
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||| |  |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  790138 tttcaggtatggagttaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 790203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 27842637 - 27842572
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  27842637 tttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacgtatg 27842572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 34393674 - 34393739
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  34393674 tttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacgtatg 34393739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 22871305 - 22871355
Alignment:
Q  249 taactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22871305 taactaaactgaaccaaagttatggttcggttaaccgttttcttacctatg 22871355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 51236391 - 51236326
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||| | |||||  ||||||||||||||||||||||||||||| |||||||||||||||    
T  51236391 tttcaggtatggacctaaccaaactgaaccaaagttatggttcggttaactgttttcttacctatg 51236326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 41984645 - 41984717
Alignment:
Q  76 tatcacccttgatcaattgaaagaaggaa-taaaagagtt-ttcaggttctcattcctaaccatacatataat 146  Q
    |||||||||||||||||||| ||||||||  ||||||||| | |||||||||||||||||| | |||||||||    
T  41984645 tatcacccttgatcaattgagagaaggaagaaaaagagttgtccaggttctcattcctaactaaacatataat 41984717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 8065386 - 8065423
Alignment:
Q  262 ccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  8065386 ccaaagttatggttcggttaaccgttttcttacttatg 8065423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 15649183 - 15649133
Alignment:
Q  248 ctaactgaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||| || ||||||||||||||||||| |||||||| ||| |||||||||    
T  15649183 ctaaccgagctgaaccaaagttatggtttggttaaccatttgcttacctat 15649133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 32132084 - 32132032
Alignment:
Q  246 aactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||||| ||| ||| |||||||||||||| |||||||| ||| |||||||||    
T  32132084 aactaaccgaattgagccaaagttatggtttggttaaccatttgcttacctat 32132032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 13857116 - 13857181
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13857116 tttcaggtatgcaactaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 13857181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 10223095 - 10223036
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttctta 293  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||    
T  10223095 tttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttctta 10223036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 5931153 - 5931218
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||||| ||| | ||||||||||||||||||  ||||||||||||||||||||||||||    
T  5931153 tttcaggtatgcagctatccgaactgaaccaaagttataattcggttaaccgttttcttacctatg 5931218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 5938129 - 5938084
Alignment:
Q  254 gaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  5938129 gaactgaaccaaagttatggttcggttaaccgttttcttacctatg 5938084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 50328407 - 50328369
Alignment:
Q  250 aactgaactgaaccaaagttatggttcggttaaccgttt 288  Q
    |||||||||||||||||||||||||||||||||||||||    
T  50328407 aactgaactgaaccaaagttatggttcggttaaccgttt 50328369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 50309071 - 50309116
Alignment:
Q  254 gaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  50309071 gaactgaaccaaagttatgtttcggttaaccgttttcttacttatg 50309116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 284
Target Start/End: Complemental strand, 32863631 - 32863593
Alignment:
Q  246 aactaactgaactgaaccaaagttatggttcggttaacc 284  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  32863631 aactaaccgaactgaaccaaagttatggttcggttaacc 32863593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 40929388 - 40929430
Alignment:
Q  246 aactaactgaactgaaccaaagttatggttcggttaaccgttt 288  Q
    ||||||| |||||||||||||||||||||||||||||| ||||    
T  40929388 aactaaccgaactgaaccaaagttatggttcggttaactgttt 40929430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Complemental strand, 50875540 - 50875502
Alignment:
Q  250 aactgaactgaaccaaagttatggttcggttaaccgttt 288  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  50875540 aactgaactgaaccaaagttatagttcggttaaccgttt 50875502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 50303274 - 50303230
Alignment:
Q  254 gaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||||||||||||||||| ||||||||||||||| ||| |||||    
T  50303274 gaactgaaccaaagttatgtttcggttaaccgtttgcttgcctat 50303230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 298
Target Start/End: Original strand, 13840802 - 13840845
Alignment:
Q  255 aactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    |||||||||||||||||||||||||||||| |||  ||||||||    
T  13840802 aactgaaccaaagttatggttcggttaaccatttgtttacctat 13840845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 284
Target Start/End: Complemental strand, 25639464 - 25639429
Alignment:
Q  249 taactgaactgaaccaaagttatggttcggttaacc 284  Q
    |||| |||||||||||||||||||||||||||||||    
T  25639464 taaccgaactgaaccaaagttatggttcggttaacc 25639429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 298
Target Start/End: Complemental strand, 40292969 - 40292926
Alignment:
Q  255 aactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||||||| |||||||||||||||||||| ||| |||||||||    
T  40292969 aactgaacctaagttatggttcggttaaccatttgcttacctat 40292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 33639476 - 33639427
Alignment:
Q  249 taactgaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    |||| ||| |||||||||||||||||||| |||||||||| ||| |||||    
T  33639476 taaccgaaatgaaccaaagttatggttcgattaaccgtttgcttccctat 33639427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 40143375 - 40143310
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  40143375 tttcaggtatgcaactaaccgaactgaaccaaagttatggttcggttaaccgttttcttacatatg 40143310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 12389230 - 12389281
Alignment:
Q  248 ctaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  12389230 ctaaccgaactgaaccaaagttatggttcggttaactgttttcttacctatg 12389281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 248 - 299
Target Start/End: Complemental strand, 31879593 - 31879542
Alignment:
Q  248 ctaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  31879593 ctaaccgaactgaaccaaagttatggttcgattaaccgttttcttacctatg 31879542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 46171687 - 46171745
Alignment:
Q  238 aggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacct 296  Q
    ||||||| | ||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  46171687 aggtatggagctaaccgaactgaaccaaagttatgtttcggttaaccgttttcttacct 46171745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 27510833 - 27510885
Alignment:
Q  246 aactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||| |||||    
T  27510833 aactaaccgaactgaaccaaagttatggttcggttaaccgtttgcttgcctat 27510885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 6582396 - 6582447
Alignment:
Q  248 ctaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||| |||||||||||||||||| |||||||||||||||||| ||||||||    
T  6582396 ctaaccgaactgaaccaaagttatagttcggttaaccgttttcctacctatg 6582447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 2736734 - 2736776
Alignment:
Q  246 aactaactgaactgaaccaaagttatggttcggttaaccgttt 288  Q
    ||||||| |||||||||||||||||||||||||||||| ||||    
T  2736734 aactaaccgaactgaaccaaagttatggttcggttaactgttt 2736776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 23516167 - 23516217
Alignment:
Q  248 ctaactgaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||| |||||||||||||||||||||| |||||| | |||||||||||||    
T  23516167 ctaaccgaactgaaccaaagttatggtttggttaatcattttcttacctat 23516217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 38935827 - 38935877
Alignment:
Q  248 ctaactgaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||||||||| |||||||||||||||| |||||||| ||| |||||||||    
T  38935827 ctaactgaactaaaccaaagttatggtttggttaaccatttgcttacctat 38935877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 47996614 - 47996663
Alignment:
Q  249 taactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  47996614 taactgaactgaaccaaagtt-tggttcggttaacaattttcttacctatg 47996663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 6009774 - 6009726
Alignment:
Q  250 aactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||||| ||||||||||||||||||||| |||| |||||||||    
T  6009774 aactgaactgaactaaagttatggttcggttaaccatttt-ttacctatg 6009726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 35653367 - 35653323
Alignment:
Q  254 gaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    |||||||||||||||||||||| |||||||| ||| |||||||||    
T  35653367 gaactgaaccaaagttatggtttggttaaccatttgcttacctat 35653323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 298
Target Start/End: Complemental strand, 23393220 - 23393177
Alignment:
Q  255 aactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||||||| |||||||||||||||||||| ||| |||||||||    
T  23393220 aactgaacctaagttatggttcggttaaccatttgcttacctat 23393177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 298
Target Start/End: Original strand, 26463935 - 26463978
Alignment:
Q  255 aactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||||||||||||||||||| |||||||| ||| |||||||||    
T  26463935 aactgaaccaaagttatggtttggttaaccatttgcttacctat 26463978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 298
Target Start/End: Original strand, 48995770 - 48995813
Alignment:
Q  255 aactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    |||||||||||| ||||||||||||||||| ||||||| |||||    
T  48995770 aactgaaccaaaattatggttcggttaaccattttcttgcctat 48995813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 6763677 - 6763719
Alignment:
Q  255 aactgaaccaaagttatggttcggttaaccgttttcttaccta 297  Q
    |||||||||||||||||||||| ||||||||||| ||| ||||    
T  6763677 aactgaaccaaagttatggttcagttaaccgtttccttgccta 6763719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 35258269 - 35258311
Alignment:
Q  246 aactaactgaactgaaccaaagttatggttcggttaaccgttt 288  Q
    ||||||| ||||||||||||||||||  |||||||||||||||    
T  35258269 aactaaccgaactgaaccaaagttataattcggttaaccgttt 35258311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 33691737 - 33691672
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33691737 tttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 33691672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 10903037 - 10903102
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  10903037 tttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacatatg 10903102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 14333987 - 14334052
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  14333987 tttcaggtatggagctaactgaactgaaccaaagttatggttcggttactcgttttcttacctatg 14334052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 19147593 - 19147658
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  19147593 tttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccattttcttacctatg 19147658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 9540016 - 9540058
Alignment:
Q  246 aactaactgaactgaaccaaagttatggttcggttaaccgttt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  9540016 aactaactgaactgaaccaaagttatggttcggttaaccgttt 9540058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 10226804 - 10226856
Alignment:
Q  246 aactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||| |||||    
T  10226804 aactaaccgaactgaaccaaaattatggttcggttaaccgttttcttgcctat 10226856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 34360461 - 34360505
Alignment:
Q  254 gaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  34360461 gaactgaaccaaagttatagttcggttaaccgttttcttacctat 34360505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 36368563 - 36368608
Alignment:
Q  254 gaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||    
T  36368563 gaaccgaaccaaagttatggttcggttaaccgttttcttatctatg 36368608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 26053673 - 26053621
Alignment:
Q  246 aactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||||| ||| ||||||||||||||||||||||||||||||| ||| |||||    
T  26053673 aactaaccgaattgaaccaaagttatggttcggttaaccgtttgcttgcctat 26053621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 15255003 - 15255045
Alignment:
Q  246 aactaactgaactgaaccaaagttatggttcggttaaccgttt 288  Q
    ||||||| |||||||||||||||||||||||||| ||||||||    
T  15255003 aactaaccgaactgaaccaaagttatggttcggtcaaccgttt 15255045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 13947140 - 13947185
Alignment:
Q  249 taactgaactgaaccaaagttatggttcggttaaccgttttcttac 294  Q
    ||||| |||||||||||||||||||||||||||||| ||| |||||    
T  13947140 taactaaactgaaccaaagttatggttcggttaaccatttgcttac 13947185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 17564489 - 17564444
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggt 279  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||||    
T  17564489 tttcaggtatggagctaaccgaactgaaccaaagttatggttcggt 17564444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 27114944 - 27114993
Alignment:
Q  249 taactgaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    |||| ||||||||||||||||||||||||||||||| ||| ||| |||||    
T  27114944 taaccgaactgaaccaaagttatggttcggttaaccatttacttccctat 27114993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 28734038 - 28733986
Alignment:
Q  246 aactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||||| ||||| |||||||||||||||| |||||||||||| ||| |||||    
T  28734038 aactaaccgaactaaaccaaagttatggtttggttaaccgtttgcttgcctat 28733986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 42475723 - 42475775
Alignment:
Q  246 aactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||||| ||| ||||||||||||||||||||||||||| ||| | |||||||    
T  42475723 aactaaccgaattgaaccaaagttatggttcggttaaccatttgcatacctat 42475775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 298
Target Start/End: Complemental strand, 4885546 - 4885503
Alignment:
Q  255 aactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||||||| |||||||||||||||||||| ||| |||||||||    
T  4885546 aactgaacctaagttatggttcggttaaccatttgcttacctat 4885503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 21184144 - 21184105
Alignment:
Q  255 aactgaaccaaagttatggttcggttaaccgttttcttac 294  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  21184144 aactgaaccaaagttatggttcggttaaccatttgcttac 21184105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 298
Target Start/End: Original strand, 40614689 - 40614732
Alignment:
Q  255 aactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    |||||||||||||||||||||||||||||| ||| |||| ||||    
T  40614689 aactgaaccaaagttatggttcggttaaccatttacttatctat 40614732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Complemental strand, 33238170 - 33238137
Alignment:
Q  255 aactgaaccaaagttatggttcggttaaccgttt 288  Q
    |||||||||||||||||||||| |||||||||||    
T  33238170 aactgaaccaaagttatggttcagttaaccgttt 33238137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 40347007 - 40347060
Alignment:
Q  246 aactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||| ||||||||||| ||||||| || | |||||||||| ||||||||||    
T  40347007 aactaaccgaactgaaccagagttatgatttgattaaccgtttgcttacctatg 40347060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 19127375 - 19127427
Alignment:
Q  238 aggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttc 290  Q
    ||||||| | ||||| |||||||||||||||| | |||||||||||| |||||    
T  19127375 aggtatggagctaaccgaactgaaccaaagttgttgttcggttaaccattttc 19127427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 45067620 - 45067555
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  45067620 tttcaggtatgcagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacatatg 45067555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 35086438 - 35086503
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||| |  |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35086438 tttcaggtatggagttaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 35086503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 45920143 - 45920078
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||| | ||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  45920143 tttcaggtatggagctaaccgaactgaaccaaagttatggttaggttaaccgttttcttacctatg 45920078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 11353734 - 11353786
Alignment:
Q  246 aactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||| |||||    
T  11353734 aactaaccgaactgaaccaaagttatggttcggttaaccgtttgcttgcctat 11353786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 8550678 - 8550636
Alignment:
Q  246 aactaactgaactgaaccaaagttatggttcggttaaccgttt 288  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  8550678 aactaaccgaactgaaccaaagttatggttcggttaaccgttt 8550636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 32030386 - 32030342
Alignment:
Q  254 gaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    |||||||||||||||||||||||| |||||||||| |||||||||    
T  32030386 gaactgaaccaaagttatggttcgattaaccgtttgcttacctat 32030342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 298
Target Start/End: Original strand, 31845191 - 31845234
Alignment:
Q  255 aactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    |||||||||||||||||||||||||||||| ||| |||||||||    
T  31845191 aactgaaccaaagttatggttcggttaaccatttgcttacctat 31845234  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 298
Target Start/End: Original strand, 46400112 - 46400155
Alignment:
Q  255 aactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    |||||||||||||||||||||||||||||| ||| |||||||||    
T  46400112 aactgaaccaaagttatggttcggttaaccatttgcttacctat 46400155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 28681913 - 28681963
Alignment:
Q  248 ctaactgaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||| |||||||||||||||||||||| |||||||| ||| |||||||||    
T  28681913 ctaaccgaactgaaccaaagttatggtttggttaaccatttgcttacctat 28681963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 33382429 - 33382379
Alignment:
Q  248 ctaactgaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||| |||||||||||||||||||||| |||||||| ||| |||||||||    
T  33382429 ctaaccgaactgaaccaaagttatggtttggttaaccatttgcttacctat 33382379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 27856572 - 27856611
Alignment:
Q  260 aaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  27856572 aaccaaagttatggttcagttaaccgttttcttatctatg 27856611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 289
Target Start/End: Original strand, 39915710 - 39915745
Alignment:
Q  254 gaactgaaccaaagttatggttcggttaaccgtttt 289  Q
    |||| |||||||||||||||||||||||||||||||    
T  39915710 gaaccgaaccaaagttatggttcggttaaccgtttt 39915745  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 293
Target Start/End: Original strand, 22627986 - 22628024
Alignment:
Q  255 aactgaaccaaagttatggttcggttaaccgttttctta 293  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  22627986 aactgaaccaaagttattgttcggttaaccattttctta 22628024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 32745940 - 32745990
Alignment:
Q  248 ctaactgaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||| |||||||||||||||||||||| || ||||| ||| |||||||||    
T  32745940 ctaaccgaactgaaccaaagttatggtttggctaaccatttacttacctat 32745990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 40474435 - 40474481
Alignment:
Q  248 ctaactgaactgaaccaaagttatggttcggttaaccgttttcttac 294  Q
    ||||| |||||||||||||||||||||| |||||||| ||| |||||    
T  40474435 ctaaccgaactgaaccaaagttatggtttggttaaccatttgcttac 40474481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 3523204 - 3523269
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3523204 tttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 3523269  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 31069184 - 31069249
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31069184 tttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 31069249  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 26818453 - 26818394
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttctta 293  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||    
T  26818453 tttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttctta 26818394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 288
Target Start/End: Complemental strand, 42545774 - 42545740
Alignment:
Q  254 gaactgaaccaaagttatggttcggttaaccgttt 288  Q
    |||||||||||||||||||||||||||||||||||    
T  42545774 gaactgaaccaaagttatggttcggttaaccgttt 42545740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 33062098 - 33062046
Alignment:
Q  246 aactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||||| ||||||||||||| |||||||||||||||| |||| ||| |||||    
T  33062098 aactaaccgaactgaaccaaaattatggttcggttaactgtttgcttgcctat 33062046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 298
Target Start/End: Complemental strand, 31508509 - 31508466
Alignment:
Q  255 aactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||    
T  31508509 aactgaaccaaagttatggttctgttaaccatttgcttacctat 31508466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 28747606 - 28747656
Alignment:
Q  248 ctaactgaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||| ||||||||| |||||||||||| |||||||| ||| |||||||||    
T  28747606 ctaaccgaactgaactaaagttatggtttggttaaccatttgcttacctat 28747656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 8465186 - 8465223
Alignment:
Q  261 accaaagttatggttcggttaaccgttttcttacctat 298  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  8465186 accaaagttatgattcggttaaccgtttgcttacctat 8465223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 7461 - 7396
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7461 tttcacgtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 7396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 17154373 - 17154308
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||| |  |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17154373 tttcaggtatggagttaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 17154308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 33702609 - 33702672
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttaccta 297  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  33702609 tttcaggtatggagctaaccgaactgaaccaaagttatggttcggttaaccattttcttaccta 33702672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 299
Target Start/End: Complemental strand, 29092852 - 29092787
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||||||| | ||||| ||||||||||||||||||||||||| |||||||||||||| |||||    
T  29092852 tttcaggtatggagctaaccgaactgaaccaaagttatggttcggataaccgttttcttatctatg 29092787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 8636220 - 8636168
Alignment:
Q  246 aactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||||| || ||||||||||||||||| |||||||||||||| |||||||||    
T  8636220 aactaaccgagctgaaccaaagttatggctcggttaaccgtttgcttacctat 8636168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 27596537 - 27596587
Alignment:
Q  248 ctaactgaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||| ||||||||||||| |||||||| |||||||| ||| |||||||||    
T  27596537 ctaaccgaactgaaccaaaattatggtttggttaaccatttgcttacctat 27596587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 23111368 - 23111404
Alignment:
Q  246 aactaactgaactgaaccaaagttatggttcggttaa 282  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  23111368 aactaaccgaactgaatcaaagttatggttcggttaa 23111404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 2154076 - 2154015
Alignment:
Q  238 aggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  2154076 aggtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 2154015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 31365541 - 31365606
Alignment:
Q  234 tttcaggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 299  Q
    ||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31365541 tttcaagtatggagctaaccgaactgaaccaaagttatggttcggttaaccgttttcttacctatg 31365606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 288
Target Start/End: Complemental strand, 5270517 - 5270467
Alignment:
Q  238 aggtatgcaactaactgaactgaaccaaagttatggttcggttaaccgttt 288  Q
    ||||||| ||||||||||||| |||||||||||||||||  ||||||||||    
T  5270517 aggtatggaactaactgaactaaaccaaagttatggttcaattaaccgttt 5270467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 298
Target Start/End: Original strand, 43177168 - 43177211
Alignment:
Q  255 aactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||||||| |||||||||||||||||||| ||| |||||||||    
T  43177168 aactgaacctaagttatggttcggttaaccatttgcttacctat 43177211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 9623990 - 9623950
Alignment:
Q  258 tgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    |||||||||||||||||| |||||||| ||| |||||||||    
T  9623990 tgaaccaaagttatggtttggttaaccatttgcttacctat 9623950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 54136 - 54084
Alignment:
Q  246 aactaactgaactgaaccaaagttatggttcggttaaccgttttcttacctat 298  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  54136 aactaaccgaactgaaccaaagttatggttcggttaaccgtttgcttacctat 54084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 2327 - 2285
Alignment:
Q  255 aactgaaccaaagttatggttcggttaaccgttttcttaccta 297  Q
    |||||||||||||||||||||| ||||||||||| ||| ||||    
T  2327 aactgaaccaaagttatggttcagttaaccgtttccttgccta 2285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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