View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2988_low_1 (Length: 502)
Name: NF2988_low_1
Description: NF2988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2988_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 26542741 - 26542270
Alignment:
| Q |
1 |
agtctctcttgaccgaatccagtgcatatgtaaaaagggggtacttagtcaaagtgccatatacacatgaccttttaatatcagataagggggagatgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26542741 |
agtctctcttgaccgaatccagtgcatatgtaaaaagggggtacttagtcaaagtgccatatacacatgaccttttaatatcagataagggggagatgtt |
26542642 |
T |
|
| Q |
101 |
cctcctgctcgccctcgtgccgagctcgtgattattcggcctactatcgcatgcttctcacggattgggttttttattacggtaaaattagattggaaaa |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26542641 |
cctcctgctcgcccttgtgccgagctcgtgattattcggcctactatcgcatgcttctcacggattgggttttttattacggtaaaattagattggaaaa |
26542542 |
T |
|
| Q |
201 |
actttccaaattataaatgatttctacatgaaaattgagagaattcaaaaaagaccctgcaaacaatttgaatcgaaagaagaacatcatacaatagaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26542541 |
actttccaaattataaatgatttctacatgaaaattgagagaattcaaaaaagaccctgcaaacaatttgaatcgaaagaagaacatcatacaatagaaa |
26542442 |
T |
|
| Q |
301 |
aaagataagagcgtggaaataaaaatggtaaagaaagattcttaagccaataatttctttcttatacacttgatagtaaatataatatgggaaacgccta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26542441 |
aaagataagagcgtggaaataaaaatggtaaagaaagattcttaagccaataatttctttcttatacacttgatagtaaatataatatgggaaacgccta |
26542342 |
T |
|
| Q |
401 |
tttgcattgcaacgacttcataatattcaacttgtaataaaatcctaaattctaatagttgtacttataact |
472 |
Q |
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| T |
26542341 |
tttgcattgcaacgacttcataatattcaacttgtaataaaatcctaaattctaataattgtacttataact |
26542270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 391 - 471
Target Start/End: Complemental strand, 6432967 - 6432886
Alignment:
| Q |
391 |
gaaacgcctatttgcattgcaacgacttcataatattcaacttg-taataaaatcctaaattctaatagttgtacttataac |
471 |
Q |
| |
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|||| ||||| |||||||| || |||||||||| ||||||||| ||||||||||||||||||||||| || |||||||||| |
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| T |
6432967 |
gaaatgcctacttgcattgtaatgacttcataacattcaacttcataataaaatcctaaattctaataattatacttataac |
6432886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 334
Target Start/End: Complemental strand, 1329204 - 1329133
Alignment:
| Q |
263 |
acaatttgaatcgaaagaagaacatcatacaatagaaaaaagataagagcgtggaaataaaaatggtaaaga |
334 |
Q |
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|||||| |||| || |||||||||| || |||||||||| ||| ||||||||||||||| |||||||||||| |
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| T |
1329204 |
acaattggaatggatagaagaacattatgcaatagaaaagagagaagagcgtggaaatagaaatggtaaaga |
1329133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 335
Target Start/End: Complemental strand, 44187950 - 44187878
Alignment:
| Q |
263 |
acaatttgaatcgaaagaagaacatcatacaatagaaaaaagataagagcgtggaaataaaaatggtaaagaa |
335 |
Q |
| |
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|||||| ||||||||||||||||| ||||||||||||| ||| || | | | |||||||||||||||||||| |
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| T |
44187950 |
acaattggaatcgaaagaagaacaatatacaatagaaaagagagaaaaacatagaaataaaaatggtaaagaa |
44187878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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