View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2988_low_12 (Length: 208)
Name: NF2988_low_12
Description: NF2988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2988_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 37 - 192
Target Start/End: Complemental strand, 31214084 - 31213925
Alignment:
| Q |
37 |
aacacaccgtgataatgagatcttgattttttgtagtactaatatatttcttccaaatattgtttttcagc-----aaaggagtgttctatttagttaca |
131 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31214084 |
aacacaccatgataatgagatcttgattttttgtagtactaatatatttcttccaaatattgtttttcagcaaattaaaggagtgttctatttagttaca |
31213985 |
T |
|
| Q |
132 |
taaacttattataatttttaacaatttgcagttttccagtacaaccccacaaacttataat |
192 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213984 |
taaa-ttattataatttttaacaatttgcagttttccagtacaaccccacaaacttataat |
31213925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 37 - 177
Target Start/End: Complemental strand, 31201545 - 31201406
Alignment:
| Q |
37 |
aacacaccgtgataatgagatcttgattttttgtagtactaatatatttcttccaaatattgtttttcagcaaaggagtgttctatttagttacataaac |
136 |
Q |
| |
|
|||||||| |||||||||||||||| |||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31201545 |
aacacaccatgataatgagatcttggttttttt--gtagtaatatagttcttccaaatattgtttttcagcaaaggagtgttctatttagttacatgaac |
31201448 |
T |
|
| Q |
137 |
ttattataattttt-aacaatttgcagttttccagtacaacc |
177 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
31201447 |
ttattataatttttgaacaatttgcagttttccattacaacc |
31201406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 37 - 177
Target Start/End: Complemental strand, 13605671 - 13605533
Alignment:
| Q |
37 |
aacacaccgtgataatgagatcttgattttttgtagtactaatatatttcttccaaatattgtttttcagcaaaggagtgttctatttagttacataaac |
136 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||||| |||| ||| ||||||||||||||||||||||||||| |||||||||| |||||| ||| |
|
|
| T |
13605671 |
aacacaccatgataatgagatctcgattttttatagta---atatcgttcctccaaatattgtttttcagcaaaggagcgttctatttaattacatgaac |
13605575 |
T |
|
| Q |
137 |
ttattataattttt-aacaatttgcagttttccagtacaacc |
177 |
Q |
| |
|
|||||||||||||| || |||||||||||||||| ||||||| |
|
|
| T |
13605574 |
ttattataatttttgaataatttgcagttttccattacaacc |
13605533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University