View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2988_low_2 (Length: 477)
Name: NF2988_low_2
Description: NF2988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2988_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 262
Target Start/End: Original strand, 12774305 - 12774556
Alignment:
| Q |
13 |
cagaagaaaaggagaaaccaacctggaacaccaagcaagtttcttcaaataatttatcagaaatatttaatttataaatacnnnnnnnnnn--ggtttca |
110 |
Q |
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| T |
12774305 |
cagaagaaaaggagaaaccaacctggaacaccaagcaagtttcttcatataatttatcagaaatatttaatttataaatacttttttttttttggtttca |
12774404 |
T |
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| Q |
111 |
tgtcttacaaataatattttgttttgtgtttgaccaccttacaaataatattttatactaattttgttatttttcttgtcttaaccctaattcaaaaaca |
210 |
Q |
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| T |
12774405 |
tgtcttacaaataatattttgttttgtgtttgaccaccttacaaataatattttatactaatttttttatttttcttgtcttaaccctaattcaaaaaca |
12774504 |
T |
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| Q |
211 |
tgtataagtctatgattgttaaattaaatattataaattgaagagctgtgtc |
262 |
Q |
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| T |
12774505 |
tgtataagtttatgattgttaaattaaatattataaattgaagagctgtgtc |
12774556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 358 - 459
Target Start/End: Original strand, 12774652 - 12774753
Alignment:
| Q |
358 |
caatgaaaacagatccagatgcagaagtgatagcactatctcccaagagcctaatggcaacaaacagatttgtatgtgaagtgtgtcaaaaagggtttca |
457 |
Q |
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| T |
12774652 |
caatgaaaacagatccagatgcagaagtgatagcactatctcccaagagcctaatggcaacaaacagatttgtatgtgaagtgtgccaaaaagggttcca |
12774751 |
T |
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| Q |
458 |
aa |
459 |
Q |
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| T |
12774752 |
aa |
12774753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 360 - 459
Target Start/End: Complemental strand, 12804920 - 12804821
Alignment:
| Q |
360 |
atgaaaacagatccagatgcagaagtgatagcactatctcccaagagcctaatggcaacaaacagatttgtatgtgaagtgtgtcaaaaagggtttcaaa |
459 |
Q |
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| T |
12804920 |
atgaaaacagatccagatgcagaggtgatagcactatctccaaagaccctaatggcaacaaacagatttgtatgtgaagtgtgtcaaaaagggtttcaaa |
12804821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 368 - 459
Target Start/End: Original strand, 42286842 - 42286933
Alignment:
| Q |
368 |
agatccagatgcagaagtgatagcactatctcccaagagcctaatggcaacaaacagatttgtatgtgaagtgtgtcaaaaagggtttcaaa |
459 |
Q |
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| T |
42286842 |
agatccagatgcagaagtgatagcactatctcccaagactctaatggcaacaaatagatttatatgtgaggtttgcaataaagggtttcaaa |
42286933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 358 - 424
Target Start/End: Complemental strand, 50789230 - 50789164
Alignment:
| Q |
358 |
caatgaaaacagatccagatgcagaagtgatagcactatctcccaagagcctaatggcaacaaacag |
424 |
Q |
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| T |
50789230 |
caatggaaacagatccagatgcagaggtgatagcactatctcccaagaccctaatggcaacaaacag |
50789164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 50789741 - 50789699
Alignment:
| Q |
15 |
gaagaaaaggagaaaccaacctggaacaccaagcaagtttctt |
57 |
Q |
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| T |
50789741 |
gaagaaaaagagaaaccaacctggaacaccaagcaagtttctt |
50789699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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