View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2988_low_3 (Length: 466)
Name: NF2988_low_3
Description: NF2988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2988_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 6947610 - 6948034
Alignment:
| Q |
18 |
aaatcaaactaattaaacacgagaacatgaacgtgagcctgttatggaaagattacgtacacatgcactctaatatatgttgctactaccatcaannnnn |
117 |
Q |
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| T |
6947610 |
aaatcaaactaatcaaacacgagaacatgaacgtgagcctgttatggaaagattacgtacacatgcactctaatatatgttgctactaccatcaattttt |
6947709 |
T |
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| Q |
118 |
nnnactgaaggaatttccttatgttgatatgcagattcttgagtgcactcaatatttataaaccgaaagaaaaacatgtactaagcataggtaaatctac |
217 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6947710 |
tttactgaaggaatttccttatgttgatatgcagattcatgagtgcactcaatatatataaaccgaaagaaaaacatgtactaagcataggtaaatctac |
6947809 |
T |
|
| Q |
218 |
aatgcagttcttttcatgatgaaaacgaagtgtaacaaaaaatcccatgttaaaatataataatcaacaaaagcagtggcctcttaactatcttaaccat |
317 |
Q |
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| T |
6947810 |
aatgcagttc-tttcatgatgaaaacgaagcgtaacataatatcccatgttaaaatataataatcaac-aaagcagtggcc---------tcttaaccat |
6947898 |
T |
|
| Q |
318 |
ataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacggtaagcattc |
417 |
Q |
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| T |
6947899 |
ataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacaacgaacttcctcatcttccttgggacggtaagcattc |
6947998 |
T |
|
| Q |
418 |
acaatgttgaaaatcttactaatctcctccggcttc |
453 |
Q |
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| T |
6947999 |
acaatgttgaaaatcttactaatctcctccggcttc |
6948034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 122 - 305
Target Start/End: Original strand, 6950182 - 6950367
Alignment:
| Q |
122 |
ctgaaggaatttccttatgttgatatgcagattcttgagtgcactcaat-atttataaaccgaaagaa--aaacatgtactaagcataggtaaatcta-c |
217 |
Q |
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| T |
6950182 |
ctgaaggaatttgctcatgttgatatgcagattcatgaacgggctcaaacatacataaaccgaaacaacaaaacaagtaataagcatagataaatctaac |
6950281 |
T |
|
| Q |
218 |
aatgcagttcttttcatgatgaaaacgaagtgtaacaaaaaatcccatgttaaaatataataatcaacaaaagcagtggcctcttaac |
305 |
Q |
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| T |
6950282 |
aatgcagttcttt-catgatgaaaacgaagcgtaacataatatcccatgttaaaatataataaacaac-aaagcagtggtctcttaac |
6950367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 450
Target Start/End: Complemental strand, 11160986 - 11160872
Alignment:
| Q |
336 |
aaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacggtaagcattcacaatgttgaaaatctta |
435 |
Q |
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| T |
11160986 |
aaccctagactctaatcattcgtcaaaagcccattgagtttcgctacggacttcctcctcttcctccggagtgtaatcattaataatgttgaaagtctta |
11160887 |
T |
|
| Q |
436 |
ctaatctcctccggc |
450 |
Q |
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| T |
11160886 |
cgaatctcctccggc |
11160872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 358
Target Start/End: Original strand, 6950380 - 6950411
Alignment:
| Q |
327 |
tagagactaaaccctagactctaatcagtttt |
358 |
Q |
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| T |
6950380 |
tagagactaaaccctagactctaatcagtttt |
6950411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 446
Target Start/End: Original strand, 11179071 - 11179145
Alignment:
| Q |
372 |
attttcacgacgaacttcctcatcttcctcgggacggtaagcattcacaatgttgaaaatcttactaatctcctc |
446 |
Q |
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| T |
11179071 |
attttcgcgacgaacttcctcctcttcctctggggtgtaatcattcttaatgttgaaaatcttgcgaatctcctc |
11179145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 5647896 - 5647852
Alignment:
| Q |
174 |
tataaaccgaaagaaaaacatgtactaagcataggtaaatctaca |
218 |
Q |
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| T |
5647896 |
tataaatcgaaagaaaaacaagtactaagcataaataaatctaca |
5647852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 308 - 453
Target Start/End: Original strand, 661917 - 662062
Alignment:
| Q |
308 |
tcttaaccatataaagttttagagactaaaccctagactctaatcagttttcaaaagtgcattgattttcacgacgaacttcctcatcttcctcgggacg |
407 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| || |||| ||| ||||| |
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| T |
661917 |
tcttaaccatataaaattttagagactaaaccctagactctaattagttttcaaaagtgcattgattttcacgacaaacttcatcctcttactccggacg |
662016 |
T |
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| Q |
408 |
gtaagcattcacaatgttgaaaatcttactaatctcctccggcttc |
453 |
Q |
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||||||||| | ||||||||||||||||| ||| |||||||||||| |
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| T |
662017 |
gtaagcatttataatgttgaaaatcttaccaatatcctccggcttc |
662062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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