View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2988_low_4 (Length: 400)
Name: NF2988_low_4
Description: NF2988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2988_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 391
Target Start/End: Original strand, 38196176 - 38196551
Alignment:
| Q |
17 |
cttatcattcctccgacgccataaacaccacaacatcatggcgatatcagtacatagttgtgacggtaatctgcataataaactnnnnnnncattaagca |
116 |
Q |
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| T |
38196176 |
cttatcattcctccgacgccataaacaccacaacatcatggcgatatcagtacatagttgtgttggtaatctgcataataaactaaaaaaacattaagca |
38196275 |
T |
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| Q |
117 |
aaattcgaaactgtagcagcagcttcagaaatagtttcccataacccagcaacttgccaaacttgctttgccgcttcagaaccaataaagacgtgccaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
38196276 |
aaattcgaaactgtagcagcagcttcagaaatagtttcccataacccagcaacttgccaaacttgctttgccgcttcacaaccaataaagacgtgcctat |
38196375 |
T |
|
| Q |
217 |
cattctcgtaattgttctca-aatgtggactgcaatctgtgcactccaaagaaacacttttacccgttgcggaaatctaagcttccacattttctcccac |
315 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38196376 |
cattctcgtaattgttctcacaatgtggacagcaatctgtgcactccaaagaaacacttttacccgctgcggaaatctaagcttccacattttctcccac |
38196475 |
T |
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| Q |
316 |
tcccctggtactcggtactcttcattatcaattagagtctctatagcatatcgatatgctgatttcacagtataat |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38196476 |
tcccctggtactcggtactcttcattatcaattagagtctccatagcatatcgatatgctgatttcacagtataat |
38196551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 4097181 - 4097121
Alignment:
| Q |
169 |
cttgccaaacttgctttgccgcttcagaaccaataaagacgtgccaatcattctcgtaatt |
229 |
Q |
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| T |
4097181 |
cttgccaaacttgcttcgtcgcatcacaacccataaacacatgccaatcattctcataatt |
4097121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 25500365 - 25500289
Alignment:
| Q |
153 |
tcccataacccagcaacttgccaaacttgctttgccgcttcagaaccaataaagacgtgccaatcattctcgtaatt |
229 |
Q |
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||||||| |||||| |||||||| ||||| ||||| || ||| | |||||||| |||||||||||||| || ||||| |
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| T |
25500365 |
tcccatagcccagctacttgccacacttgttttgcagcctcacagccaataaacacgtgccaatcattttcataatt |
25500289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 52175941 - 52175865
Alignment:
| Q |
153 |
tcccataacccagcaacttgccaaacttgctttgccgcttcagaaccaataaagacgtgccaatcattctcgtaatt |
229 |
Q |
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||||||| |||||| ||||||||||||| |||| || || |||||||||| |||||||||||||| || ||||| |
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| T |
52175941 |
tcccatagcccagctgcttgccaaacttgtattgcagcctcgcaaccaataaacacgtgccaatcattttcataatt |
52175865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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