View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2988_low_5 (Length: 345)
Name: NF2988_low_5
Description: NF2988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2988_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 167 - 330
Target Start/End: Original strand, 34377810 - 34377971
Alignment:
| Q |
167 |
caacagcactgtctagaagctagctacacattatttccttcattcattttcccttcccattctacgtcactctctgttcctcgtatttccctgnnnnnnn |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
34377810 |
caacagcactgtctagaagctagctacacattatttccttcattcattttcccttcccattctacgtcactctctgttcctcatatttccctg--ttttt |
34377907 |
T |
|
| Q |
267 |
nncttcttcttcaaatcatcaaattacttccacaaatcaatcacccataattaagaaatattat |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34377908 |
ttcttcttcttcaaatcatcaaattacttccacaaatcaatcacccataattaagaaatattat |
34377971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 34377639 - 34377775
Alignment:
| Q |
1 |
atgaagtgatacaacgacagaataaatgattgtgtgtttggtgtgaggtatgaattattataactttttccttcttagtacactatcacacatcaaa-tt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
34377639 |
atgaagtgatacaacgacagaataaatgattgtgtgtttggtgtgaggtatgaattattacaactttctccttcttagtacactatcacacatcaaattt |
34377738 |
T |
|
| Q |
100 |
ttttatccaatcaacttcttttatgaaacacaccgtt |
136 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34377739 |
ttttatccaagcaacttcttttatgaaacacaccgtt |
34377775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 34549741 - 34549677
Alignment:
| Q |
1 |
atgaagtgatacaacgacagaataaatgattgtgtgtttggtgtgaggtatgaattattataact |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
34549741 |
atgaagtgatacaacgacagaataaatgattgagtgtttggtgtgaggtatgaattattacaact |
34549677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 6111193 - 6111151
Alignment:
| Q |
198 |
tatttccttcattcattttcccttcccattctacgtcactctc |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6111193 |
tatttccttcattcattttcccttcccattctacttcactctc |
6111151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 334
Target Start/End: Original strand, 21448244 - 21448297
Alignment:
| Q |
277 |
tcaaatcatcaaattacttccacaaatcaatcacccataattaagaaatattattgat |
334 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
21448244 |
tcaaatcatcaatctacttccacaaatcaattaccca----taagaaatattattgat |
21448297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University