View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2988_low_7 (Length: 310)
Name: NF2988_low_7
Description: NF2988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2988_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 290
Target Start/End: Original strand, 38486399 - 38486677
Alignment:
| Q |
12 |
atgaaccaggacaactactttgaggaggcacttaaagtacgaaatctcttggaagaattcaagcattactatggtattcgaaaaccaactattttgggag |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486399 |
atgaaccaggacaactactttgaggaggcacttaaagtacgaaatctcttggaagaattcaagcattactatggtattcgaaaaccaactattttgggag |
38486498 |
T |
|
| Q |
112 |
tgagggaacatatatttacaggtttcgtttcctctcttgcttggttcatgtcagctcaggaatcaagttttgtcaccttagggcagagggttttggcaaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486499 |
tgagggaacatatatttacaggtttcgtttcttctcttgcttggtttatgtcagctcaggaatcaagttttgtcaccttagggcagagggttttggcaaa |
38486598 |
T |
|
| Q |
212 |
ccctttgaaaattcgaatgcattatggccatcctgatgtgtttgacaggttttggtttataactagaggtggtatcagt |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38486599 |
ccctttgaaaattcgaatgcattatggccatcctgatgtgtttgacaggttttggtttataactagaggtggtatcagt |
38486677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 268
Target Start/End: Original strand, 3685739 - 3685886
Alignment:
| Q |
121 |
atatatttacaggtttcgtttcctctcttgcttggttcatgtcagctcaggaatcaagttttgtcaccttagggcagagggttttggcaaaccctttgaa |
220 |
Q |
| |
|
||||||| ||||| | ||||| || |||||||||||||||||| | || || |||||||||| || | || ||| | || |||||||||||||||| |
|
|
| T |
3685739 |
atatattcacaggctctgtttcgtcgcttgcttggttcatgtcatcccaagagacaagttttgtgacactgggccagcgatttctggcaaaccctttgaa |
3685838 |
T |
|
| Q |
221 |
aattcgaatgcattatggccatcctgatgtgtttgacaggttttggtt |
268 |
Q |
| |
|
| | || ||||| || || ||||| |||||||||||||| |||||||| |
|
|
| T |
3685839 |
agtacggatgcactacggtcatccggatgtgtttgacagattttggtt |
3685886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 12 - 289
Target Start/End: Original strand, 30120798 - 30121075
Alignment:
| Q |
12 |
atgaaccaggacaactactttgaggaggcacttaaagtacgaaatctcttggaagaattcaagcattactatggtattcgaaaaccaactattttgggag |
111 |
Q |
| |
|
||||| ||||| |||||||||||||| ||||| || | |||||||| | ||||| | | | |||||| ||| | || |||||||| ||||| || | |
|
|
| T |
30120798 |
atgaatcaggataactactttgaggaagcactcaagatgagaaatctccttgaagagtatagacgttactacggtgtccggaaaccaacaattttaggtg |
30120897 |
T |
|
| Q |
112 |
tgagggaacatatatttacaggtttcgtttcctctcttgcttggttcatgtcagctcaggaatcaagttttgtcaccttagggcagagggttttggcaaa |
211 |
Q |
| |
|
| |||||||| || || || || | ||| ||||||||||| |||||||||||||| ||||| ||||||| |||||| |||| ||||||||||||||||| |
|
|
| T |
30120898 |
tcagggaacacattttcactggctccgtgtcctctcttgcctggttcatgtcagcccaggagacaagtttcgtcaccctaggacagagggttttggcaaa |
30120997 |
T |
|
| Q |
212 |
ccctttgaaaattcgaatgcattatggccatcctgatgtgtttgacaggttttggtttataactagaggtggtatcag |
289 |
Q |
| |
|
||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
30120998 |
tcctttgaaagttcgaatgcattatggtcatccagatgtgtttgacaggttttggttcttaactcgaggtggtatcag |
30121075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University