View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2988_low_9 (Length: 302)
Name: NF2988_low_9
Description: NF2988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2988_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 35384238 - 35383961
Alignment:
| Q |
18 |
tattcgtgagaagaagtgcatgttaaaatgtgaagggtgtatctgcaattacacaacttaaagtaccaaataaaaatagtacttaccaccaatnnnnnnn |
117 |
Q |
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| T |
35384238 |
tattcatgagaagaagtgcatgttaaaatgtaaagggtgtatatgcaattacacaatttaacgtaccaaataaaaatagtacttaccaccaataaaaaaa |
35384139 |
T |
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| Q |
118 |
caaatataacagagaataaattgaattaaataaaatcttgtataagctaatggtattgcaacgtttatgaaacatagtacattttgcaaagtgaacaaat |
217 |
Q |
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| T |
35384138 |
caaatataacagagaataaattgaattaaataaaatcttgtataagctaatggtattgcaacgtttatgaaacatagtacattttgcaaagggaacaaat |
35384039 |
T |
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| Q |
218 |
aaattgaactatttgaattaaatttgagccctatagatcaagaatcatcatggtcattaaacttaaaggcctttgcta |
295 |
Q |
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| T |
35384038 |
aaattgagctatttgaattaaatttgagccctatagatcaagaatcatcatggtcattaaacttaaaggcctttgcta |
35383961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 35388081 - 35387865
Alignment:
| Q |
21 |
tcgtgagaagaagtgcatgttaaaatgtgaagggtgtatctgcaattacacaacttaaagtaccaaataaaaatagtacttaccaccaatnnnnnnncaa |
120 |
Q |
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| T |
35388081 |
tcgtgagaagaaatgcatgttcaaatgtgaagggtgtatcagcaattacacaacttaaagtaccaaataaaaatagtacttaccaccaataaaaa---aa |
35387985 |
T |
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| Q |
121 |
atataacagagaataaattgaattaaataaaatcttgtataagctaatggtattgcaacgtttatgaaacatagtacattttgcaaagtgaacaaataaa |
220 |
Q |
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| T |
35387984 |
atataacagggaataaattgaattaaataaaatcttgtataagctaaaggtattgcaacatttctgaaacatagtacattttgcaaaggggacaaataaa |
35387885 |
T |
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| Q |
221 |
ttgaactatttgaattaaat |
240 |
Q |
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|||| ||||||||||||||| |
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| T |
35387884 |
ttgagctatttgaattaaat |
35387865 |
T |
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