View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2989_high_1 (Length: 593)

Name: NF2989_high_1
Description: NF2989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2989_high_1
NF2989_high_1
[»] chr3 (4 HSPs)
chr3 (16-586)||(27311360-27311930)
chr3 (193-582)||(27306379-27306768)
chr3 (196-389)||(27304952-27305145)
chr3 (104-149)||(27304852-27304897)


Alignment Details
Target: chr3 (Bit Score: 507; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 16 - 586
Target Start/End: Original strand, 27311360 - 27311930
Alignment:
Q  16 aacaatatacaaaacacaaacattcgcattccagttcaatcaatgtctgaaggacaaagatcctacccaccaatcttcannnnnnnncttcttctaaact 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||    
T  27311360 aacaatatacaaaacacaaacattcgcattccagttcaatcaatgtctgaaggacaaagatcctacccaccaatcttcattttttttcttcttctaaact 27311459  T
Q  116 ttgtacaattttggattttgagtttaaaattttgaatttaagccaatttttattcaggttcacgttcattcgaatgtgatgattcaggttcacgttcatc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27311460 ttgtacaattttggattttgagtttaaaattttgaatttaagccaatttttattcaggttcacgttcattcgaatgtgatgattcaggttcacgttcatc 27311559  T
Q  216 taaatgtgatgtcgttgcaccacatagtagcaactgaggcttaaacttattattccacaaatcactaagagtcgccgtatgatttcctcttctccgtacc 315  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| || ||||||||| |||||||||    
T  27311560 taaatgtgatgtcgttgcaccacatagtagcaactgaggtttaagcttattattccacaaatcactaaaagtcgccgcattatttcctctcctccgtacc 27311659  T
Q  316 tcaaccatcgccacctcctccgtcaaccgataaacctcaatctcaattccaaatttaccattcaactcttccaactctaccccacattctttcttccacc 415  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27311660 tcaaccatcgccaccttctccgttaaccgataaacctcaatctcaattccaaatttaccattcaactcttccaactctaccccacattctttcttccacc 27311759  T
Q  416 tcaacgccattccctctgccactcctattttcttcaccacctttaaaatcctcttcggcgactcccttacaacaaaccgctctgacccatcaaatttccc 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27311760 tcaacgccattccctctgccactcctattttcttcaccacctttaaaatcctcttcggcgactcccttacaacaaaccgctctgacccatcaaatttccc 27311859  T
Q  516 gaacaatccagacaaattcaaaccagaagaaaatgatataatatcaaacgcattcaaattcaatacctttg 586  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27311860 gaacaatccagataaattcaaaccggaagaaaatgatataatatcaaacgcattcaaattcaatacctttg 27311930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 193 - 582
Target Start/End: Original strand, 27306379 - 27306768
Alignment:
Q  193 gatgattcaggttcacgttcatctaaatgtgatgtcgttgcaccacatagtagcaactgaggcttaaacttattattccacaaatcactaagagtcgccg 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||| | |||||||     
T  27306379 gatgattcaggttcacgttcatctaaatgtgatgtcgttgcaccacatagtagcaactgaggcttaagtttattatcccacaaatcactcaaagtcgcca 27306478  T
Q  293 tatgatttcctcttctccgtacctcaaccatcgccacctcctccgtcaaccgataaacctcaatctcaattccaaatttaccattcaactcttccaactc 392  Q
     || ||||||||| |||| ||| |||||||||| ||| | |||||| ||||| |||||||| |||||||||||||| |||||||||||| ||||||| ||    
T  27306479 catcatttcctctcctccatacatcaaccatcgacacattctccgttaaccggtaaacctcgatctcaattccaaaattaccattcaacgcttccaagtc 27306578  T
Q  393 taccccacattctttcttccacctcaacgccattccctctgccactcctattttcttcaccacctttaaaatcctcttcggcgactcccttacaacaaac 492  Q
     |||||||||||||||||||||||||||| |||||||| |||| ||||||  | || |||||||| |||||||||||||||||||||||||| |||||||    
T  27306579 caccccacattctttcttccacctcaacgtcattccctttgccgctcctacatcctccaccacctctaaaatcctcttcggcgactcccttaaaacaaac 27306678  T
Q  493 cgctctgacccatcaaatttcccgaacaatccagacaaattcaaaccagaagaaaatgatataatatcaaacgcattcaaattcaatacc 582  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||| |||||    
T  27306679 cgctctgtcccatcaaattccccaaacaatccagacaaattcataccggaagaaaatgatataatattaaacgcattcaaattctatacc 27306768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 196 - 389
Target Start/End: Original strand, 27304952 - 27305145
Alignment:
Q  196 gattcaggttcacgttcatctaaatgtgatgtcgttgcaccacatagtagcaactgaggcttaaacttattattccacaaatcactaagagtcgccgtat 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||||||||||| |  ||    
T  27304952 gattcaggttcacgttcatctaaatgtgatgtcgttgcaccacatagtaggaaccgaggcttaagcttattatcccacaaatcactaagagtcggcacat 27305051  T
Q  296 gatttcctcttctccgtacctcaaccatcgccacctcctccgtcaaccgataaacctcaatctcaattccaaatttaccattcaactcttccaa 389  Q
     ||||||||| |||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| |||| |||||||||||  |||||||    
T  27305052 catttcctctcctccgttcctcaaccatcgacacctcctccgttaaccgataaacctcaatctcaatttcaaaattaccattcaatccttccaa 27305145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 27304852 - 27304897
Alignment:
Q  104 ttcttctaaactttgtacaattttggattttgagtttaaaattttg 149  Q
    ||||||||||||||||||||||||||||||||||||| || |||||    
T  27304852 ttcttctaaactttgtacaattttggattttgagtttcaatttttg 27304897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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