View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2989_low_1 (Length: 593)
Name: NF2989_low_1
Description: NF2989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2989_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 507; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 16 - 586
Target Start/End: Original strand, 27311360 - 27311930
Alignment:
| Q |
16 |
aacaatatacaaaacacaaacattcgcattccagttcaatcaatgtctgaaggacaaagatcctacccaccaatcttcannnnnnnncttcttctaaact |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27311360 |
aacaatatacaaaacacaaacattcgcattccagttcaatcaatgtctgaaggacaaagatcctacccaccaatcttcattttttttcttcttctaaact |
27311459 |
T |
|
| Q |
116 |
ttgtacaattttggattttgagtttaaaattttgaatttaagccaatttttattcaggttcacgttcattcgaatgtgatgattcaggttcacgttcatc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27311460 |
ttgtacaattttggattttgagtttaaaattttgaatttaagccaatttttattcaggttcacgttcattcgaatgtgatgattcaggttcacgttcatc |
27311559 |
T |
|
| Q |
216 |
taaatgtgatgtcgttgcaccacatagtagcaactgaggcttaaacttattattccacaaatcactaagagtcgccgtatgatttcctcttctccgtacc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| || ||||||||| ||||||||| |
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| T |
27311560 |
taaatgtgatgtcgttgcaccacatagtagcaactgaggtttaagcttattattccacaaatcactaaaagtcgccgcattatttcctctcctccgtacc |
27311659 |
T |
|
| Q |
316 |
tcaaccatcgccacctcctccgtcaaccgataaacctcaatctcaattccaaatttaccattcaactcttccaactctaccccacattctttcttccacc |
415 |
Q |
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|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27311660 |
tcaaccatcgccaccttctccgttaaccgataaacctcaatctcaattccaaatttaccattcaactcttccaactctaccccacattctttcttccacc |
27311759 |
T |
|
| Q |
416 |
tcaacgccattccctctgccactcctattttcttcaccacctttaaaatcctcttcggcgactcccttacaacaaaccgctctgacccatcaaatttccc |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27311760 |
tcaacgccattccctctgccactcctattttcttcaccacctttaaaatcctcttcggcgactcccttacaacaaaccgctctgacccatcaaatttccc |
27311859 |
T |
|
| Q |
516 |
gaacaatccagacaaattcaaaccagaagaaaatgatataatatcaaacgcattcaaattcaatacctttg |
586 |
Q |
| |
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|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27311860 |
gaacaatccagataaattcaaaccggaagaaaatgatataatatcaaacgcattcaaattcaatacctttg |
27311930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 193 - 582
Target Start/End: Original strand, 27306379 - 27306768
Alignment:
| Q |
193 |
gatgattcaggttcacgttcatctaaatgtgatgtcgttgcaccacatagtagcaactgaggcttaaacttattattccacaaatcactaagagtcgccg |
292 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | ||||||| |
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| T |
27306379 |
gatgattcaggttcacgttcatctaaatgtgatgtcgttgcaccacatagtagcaactgaggcttaagtttattatcccacaaatcactcaaagtcgcca |
27306478 |
T |
|
| Q |
293 |
tatgatttcctcttctccgtacctcaaccatcgccacctcctccgtcaaccgataaacctcaatctcaattccaaatttaccattcaactcttccaactc |
392 |
Q |
| |
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|| ||||||||| |||| ||| |||||||||| ||| | |||||| ||||| |||||||| |||||||||||||| |||||||||||| ||||||| || |
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| T |
27306479 |
catcatttcctctcctccatacatcaaccatcgacacattctccgttaaccggtaaacctcgatctcaattccaaaattaccattcaacgcttccaagtc |
27306578 |
T |
|
| Q |
393 |
taccccacattctttcttccacctcaacgccattccctctgccactcctattttcttcaccacctttaaaatcctcttcggcgactcccttacaacaaac |
492 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| |||| |||||| | || |||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
27306579 |
caccccacattctttcttccacctcaacgtcattccctttgccgctcctacatcctccaccacctctaaaatcctcttcggcgactcccttaaaacaaac |
27306678 |
T |
|
| Q |
493 |
cgctctgacccatcaaatttcccgaacaatccagacaaattcaaaccagaagaaaatgatataatatcaaacgcattcaaattcaatacc |
582 |
Q |
| |
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||||||| ||||||||||| ||| ||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||| ||||| |
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|
| T |
27306679 |
cgctctgtcccatcaaattccccaaacaatccagacaaattcataccggaagaaaatgatataatattaaacgcattcaaattctatacc |
27306768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 196 - 389
Target Start/End: Original strand, 27304952 - 27305145
Alignment:
| Q |
196 |
gattcaggttcacgttcatctaaatgtgatgtcgttgcaccacatagtagcaactgaggcttaaacttattattccacaaatcactaagagtcgccgtat |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||||||||||| | || |
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|
| T |
27304952 |
gattcaggttcacgttcatctaaatgtgatgtcgttgcaccacatagtaggaaccgaggcttaagcttattatcccacaaatcactaagagtcggcacat |
27305051 |
T |
|
| Q |
296 |
gatttcctcttctccgtacctcaaccatcgccacctcctccgtcaaccgataaacctcaatctcaattccaaatttaccattcaactcttccaa |
389 |
Q |
| |
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||||||||| |||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||| |
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| T |
27305052 |
catttcctctcctccgttcctcaaccatcgacacctcctccgttaaccgataaacctcaatctcaatttcaaaattaccattcaatccttccaa |
27305145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 27304852 - 27304897
Alignment:
| Q |
104 |
ttcttctaaactttgtacaattttggattttgagtttaaaattttg |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
27304852 |
ttcttctaaactttgtacaattttggattttgagtttcaatttttg |
27304897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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