View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2989_low_3 (Length: 253)
Name: NF2989_low_3
Description: NF2989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2989_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 47897616 - 47897382
Alignment:
| Q |
1 |
agcataagcaaagaaatcaacgtattttgcttggatatttgaatggacaaaaattaaatgcaggaacataaagaacatacattgcatataagtgttgccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47897616 |
agcataagcaaagaaatcaacgtattttgcttggatatttgaatggacaaaacttaaatgcaggaacataaagaacatacattgcatataagtgttgccc |
47897517 |
T |
|
| Q |
101 |
tttttgaatttgccgcatttcttatgaagatgaaaatataacagtgaaaaagaagggtaaagttgacactcttttaagctatagtatgtccattaatata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47897516 |
tttttgaatttgccgcatttcttatgaagatgaaaatataacagtgaaaaagaagggtaaagttgacactcttttaagctatagtatgtccattaatata |
47897417 |
T |
|
| Q |
201 |
gatttcaattttaccaaacacaatcacacaagttt |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
47897416 |
gatttcaattttaccaaacacaatcacacaagttt |
47897382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University