View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2990_low_1 (Length: 485)
Name: NF2990_low_1
Description: NF2990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2990_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 454; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 13 - 470
Target Start/End: Complemental strand, 4163950 - 4163493
Alignment:
| Q |
13 |
aatatatggattgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4163950 |
aatatatggattgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatg |
4163851 |
T |
|
| Q |
113 |
gtagcatcatttggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4163850 |
gtagcatcatttggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattc |
4163751 |
T |
|
| Q |
213 |
tggatcaacaatttgggatagtttcactcaccctgcggatgccgctgttccaacgatgagaattgcatctaataaagcaacggggaagaatatatctttt |
312 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4163750 |
tagatcaacaatttgggatagtttcactcaccctgcggatgccgctgttccaacgatgagaattgcatctaataaagcaacggggaagaatatatctttt |
4163651 |
T |
|
| Q |
313 |
gtatcaagaaaaagtgaaaatgatccttcttcaggacattatataggaagtcttgaaagattggatgcaccagaagtttttatttggtatgataagagaa |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4163650 |
gtatcaagaaaaagtgaaaatgatccttcttcaggacattatataggaagtcttgaaagattggatgcaccagaagtttttatttggtatgataagagaa |
4163551 |
T |
|
| Q |
413 |
ttcattggagaactggtccatggaatggaacggtttttctcggatcaccgagaatgtt |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4163550 |
ttcattggagaactggtccatggaatggaacggtttttctcggatcaccgagaatgtt |
4163493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 470
Target Start/End: Complemental strand, 4124241 - 4123790
Alignment:
| Q |
13 |
aatatatggattgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
4124241 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaaccaaatg |
4124142 |
T |
|
| Q |
113 |
gtagcatcatttggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattc |
212 |
Q |
| |
|
|| || || |||||||||| ||||||| || ||||| |||||| ||||||||||||| |||| ||||||||||||| | || || |||| ||| |
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|
| T |
4124141 |
gtgttattatatggtcaacaaacatttca--tc----ttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttc |
4124048 |
T |
|
| Q |
213 |
tggatcaacaatttgggatagtttcactcaccctgcggatgccgctgttccaacgatgagaattgcatctaataaagcaacggggaagaatatatctttt |
312 |
Q |
| |
|
|||| ||||||| |||||||||||||| |||||||| ||||| ||||||||||| |||||||||||| |||| ||| ||| || ||||| ||||| ||| |
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|
| T |
4124047 |
tggagcaacaatctgggatagtttcacacaccctgcagatgcagctgttccaacaatgagaattgcagctaaccaagtaacaggtaagaaaatatccttt |
4123948 |
T |
|
| Q |
313 |
gtatcaagaaaaagtgaaaatgatccttcttcaggacattatataggaagtcttgaaagattggatgcaccagaagtttttatttggtatgataagagaa |
412 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| || |
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|
| T |
4123947 |
gtatcaagaaaaagtgataatgatccttcttcaggacattattcagctagtcttgaaagattggatgcaccagaagttttcatttggtatgataagaaaa |
4123848 |
T |
|
| Q |
413 |
ttcattggagaactggtccatggaatggaacggtttttctcggatcaccgagaatgtt |
470 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| |
|
|
| T |
4123847 |
ttcattggagaactggtccatggaatggattggtttttctcggaacaccgagtatgtt |
4123790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 470
Target Start/End: Complemental strand, 4153591 - 4153140
Alignment:
| Q |
13 |
aatatatggattgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||| || |||||||||||||| ||||| |
|
|
| T |
4153591 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaattttataatattgaacaaaccaaatg |
4153492 |
T |
|
| Q |
113 |
gtagcatcatttggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattc |
212 |
Q |
| |
|
|| || || |||||||||| ||||||| || ||||| |||||| ||||||||||||| |||| ||||||||||||| | || || |||| ||| |
|
|
| T |
4153491 |
gtgttattatatggtcaacaaacatttca--tc----ttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttc |
4153398 |
T |
|
| Q |
213 |
tggatcaacaatttgggatagtttcactcaccctgcggatgccgctgttccaacgatgagaattgcatctaataaagcaacggggaagaatatatctttt |
312 |
Q |
| |
|
||| ||||||| |||||||||||||| |||||||| ||||| ||||||||||| |||||||||||| |||| ||| ||| || ||||| ||||| ||| |
|
|
| T |
4153397 |
cggagcaacaatctgggatagtttcacacaccctgcagatgcagctgttccaacaatgagaattgcagctaaccaagtaacaggtaagaaaatatccttt |
4153298 |
T |
|
| Q |
313 |
gtatcaagaaaaagtgaaaatgatccttcttcaggacattatataggaagtcttgaaagattggatgcaccagaagtttttatttggtatgataagagaa |
412 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||| | ||||| | | |
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|
| T |
4153297 |
gtatcaagaaaaagtgataatgatccttcttcaggacattattcagctagtcttgaaagattggatgcaccagaagttttcatttggaaagataaaaata |
4153198 |
T |
|
| Q |
413 |
ttcattggagaactggtccatggaatggaacggtttttctcggatcaccgagaatgtt |
470 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4153197 |
ttcattggagaacaggtccatggaatggaagggtttttctcggatcaccgagaatgtt |
4153140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 456
Target Start/End: Complemental strand, 4134783 - 4134349
Alignment:
| Q |
16 |
atatggattgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatggta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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|
| T |
4134783 |
atatggattgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggta |
4134684 |
T |
|
| Q |
116 |
gcatcatttggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattctgg |
215 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||| |||||| |||||| |||||| ||||| ||| |||||||||||||| |||||||||||||| |
|
|
| T |
4134683 |
tcatcatttggtcaacaaacatttca--tc----ttcaacaaattcaacagctaaacttgatgatgcagggaacttgattctaagagacatcaattctgg |
4134590 |
T |
|
| Q |
216 |
atcaacaatttgggatagtttcactcaccctgcggatgccgctgttccaacgatgagaattgcatctaataaagcaacggggaagaatatatcttttgta |
315 |
Q |
| |
|
| ||||||| |||||||||||||| |||||||| ||| | ||||||||| |||||| ||||||||||||||||| || || ||| | || |||||||| |
|
|
| T |
4134589 |
agcaacaatctgggatagtttcacacaccctgcagattcagctgttccatcgatgaaaattgcatctaataaagttacaggtaagcaaattgcttttgta |
4134490 |
T |
|
| Q |
316 |
tcaagaaaaagtgaaaatgatccttcttcaggacattatataggaagtcttgaaagattggatgcaccagaagtttttatttggtatgataagagaattc |
415 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| || | ||| ||||||||||||||| |||||||||||| |||||| | ||||| | |||| |
|
|
| T |
4134489 |
gcaagaaaaagtgacaatgatccttcttcgggacattttacaattagtgttgaaagattggatgtaccagaagttttcatttggaaagataaaaaaattt |
4134390 |
T |
|
| Q |
416 |
attggagaactggtccatggaatggaacggtttttctcgga |
456 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4134389 |
attggagaactggtccatggaatggaagggtttttctcgga |
4134349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 16 - 456
Target Start/End: Complemental strand, 4145585 - 4145151
Alignment:
| Q |
16 |
atatggattgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatggta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||| | |
|
|
| T |
4145585 |
atatggattgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaaaatggaaatcttgtaattttgaacaaaccaaatggca |
4145486 |
T |
|
| Q |
116 |
gcatcatttggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattctgg |
215 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||||| |||||| |||||| |||||| ||||| ||| |||||||||||||| |||||||||||||| |
|
|
| T |
4145485 |
gcatcatttggtcaacaaacatttca--tc----ttcaacaaattcaacagctaaacttgatgatgcagggaacttgattctaagagacatcaattctgg |
4145392 |
T |
|
| Q |
216 |
atcaacaatttgggatagtttcactcaccctgcggatgccgctgttccaacgatgagaattgcatctaataaagcaacggggaagaatatatcttttgta |
315 |
Q |
| |
|
| ||||||| |||||||||||||| |||||| | ||| | ||||||||| |||||| |||||||||||| |||| || || ||| | || |||||||| |
|
|
| T |
4145391 |
agcaacaatctgggatagtttcacacacccttcagattcagctgttccatcgatgaaaattgcatctaacaaagttacaggtaagcaaattgcttttgta |
4145292 |
T |
|
| Q |
316 |
tcaagaaaaagtgaaaatgatccttcttcaggacattatataggaagtcttgaaagattggatgcaccagaagtttttatttggtatgataagagaattc |
415 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| || | ||| ||||||||||||||| |||||||||||| |||||| | ||||| | |||| |
|
|
| T |
4145291 |
gcaagaaaaagtgacaatgatccttcttcgggacattttacaattagtgttgaaagattggatgtaccagaagttttcatttggaaagataaaaaaattt |
4145192 |
T |
|
| Q |
416 |
attggagaactggtccatggaatggaacggtttttctcgga |
456 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4145191 |
attggagaactggtccatggaatggaagagtttttctcgga |
4145151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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