View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2990_low_2 (Length: 453)

Name: NF2990_low_2
Description: NF2990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2990_low_2
NF2990_low_2
[»] chr8 (4 HSPs)
chr8 (10-436)||(43894901-43895327)
chr8 (10-436)||(44305330-44305751)
chr8 (339-436)||(44296260-44296357)
chr8 (307-371)||(42822659-42822723)
[»] chr1 (1 HSPs)
chr1 (307-371)||(7991592-7991656)
[»] chr7 (1 HSPs)
chr7 (308-372)||(32736023-32736087)
[»] chr5 (2 HSPs)
chr5 (307-371)||(9634871-9634935)
chr5 (263-296)||(28585840-28585873)
[»] chr2 (2 HSPs)
chr2 (309-372)||(1813545-1813608)
chr2 (271-322)||(18180458-18180509)
[»] chr6 (1 HSPs)
chr6 (324-371)||(10156606-10156653)
[»] chr4 (2 HSPs)
chr4 (338-376)||(23832214-23832252)
chr4 (263-352)||(30617211-30617302)


Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 10 - 436
Target Start/End: Complemental strand, 43895327 - 43894901
Alignment:
Q  10 aagaatatctgtgtgattcaaagtttgacggttagtgtaaatgccaggttat---gtccccatactaaagaagcaaaatgggattaagataatttagagg 106  Q
    |||||||||| || |||||||||||||||||| |||||||||||||||||||   |||||||||||||||   |||||||||||||||||||||||||||    
T  43895327 aagaatatctatgcgattcaaagtttgacggtcagtgtaaatgccaggttattatgtccccatactaaag---caaaatgggattaagataatttagagg 43895231  T
Q  107 caaatgaagatttgttcattttatttttgttatttgttgttaatactaattctgatgattgcttttatttgtctcagcttgcttgcaatgtttttaaata 206  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43895230 caaatgaagatttgttctttttatttttgttatttgttgttaatactaattctgatgattgcttttatctgtctcagcttgcttgcaatgtttttaaata 43895131  T
Q  207 gcagcgctatagctccattttagaacggaatttgnnnnnnnttgttattttcccaagatacgcttttagtacaaaatattgtgaaatagcgtcgctatag 306  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43895130 gcagcgctatagctccattttagaacggaatttgaaaaaaattgttattttcccaagatacgctgttagtacaaaatattgtgaaatagcgtcgctatag 43895031  T
Q  307 gctatagcactgttgcttagcggaattaaaacaaaccgttattttcagtgatctgcaattgacaaaactacttacttggtaaccactcattgttttcaat 406  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43895030 gctatagcactgttgcttaacggaattcaaacaaaccgttattttcagtgatctgcaattgacaaaactacttgcttggtaaccactcattgttttcaat 43894931  T
Q  407 atcggatagtttttgttttaatctgaaaat 436  Q
    ||||||||||||||||||||||||||||||    
T  43894930 atcggatagtttttgttttaatctgaaaat 43894901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 10 - 436
Target Start/End: Complemental strand, 44305751 - 44305330
Alignment:
Q  10 aagaatatctgtgtgattcaaagtttgacggttagtgtaaatgccaggttat---gtccccatactaaagaagcaaaatgggattaagataatttagagg 106  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  44305751 aagaatatctatgtgattcaaagtttgacggttagtgtaaatgccaggttattatgtccccatactaaagaagcaaaatgggattaagataatttagagg 44305652  T
Q  107 caaatgaagatttgttcattttatttttgttatttgttgttaatactaattctgatgattgcttttatttgtctcagcttgcttgcaatgtttttaaata 206  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  44305651 caaatgaagatttgttctttttatttttgttatttgttgttaatactaattctgatgattgcttttatttgtcgcagcttacttgcaatgtttttaaata 44305552  T
Q  207 gcagcgctatagctccattttagaacggaatttgnnnnnnnttgttattttcccaagatacgcttttagtacaaaatattgtgaaatagcgtcgctatag 306  Q
    |||||| |||||||||||||||||||||||||||       ||||||||        |||| || |||||||||||||||||||||||||||||||||||    
T  44305551 gcagcgatatagctccattttagaacggaatttg-aaaaaattgttatt-------aatacactgttagtacaaaatattgtgaaatagcgtcgctatag 44305460  T
Q  307 gctatagcactgttgcttagcggaattaaaacaaaccgttattttcagtgatctgcaattgacaaaactacttacttggtaaccactcattgttttcaat 406  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||    
T  44305459 gctatagcactgttgcttagcggaattcaaacaaaccgttattttcagtgatctgcaattgacaagactacttgcttggtcaccactcattgttttcaat 44305360  T
Q  407 atcggatagtttttgttttaatctgaaaat 436  Q
    |||||||||||||||||||||||| |||||    
T  44305359 atcggatagtttttgttttaatctaaaaat 44305330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 339 - 436
Target Start/End: Complemental strand, 44296357 - 44296260
Alignment:
Q  339 aaaccgttattttcagtgatctgcaattgacaaaactacttacttggtaaccactcattgttttcaatatcggatagtttttgttttaatctgaaaat 436  Q
    ||||||||||| ||  |||| |||||||||||| |||||| || ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  44296357 aaaccgttattctccttgatttgcaattgacaacactactcacgtggtaaccactcattgttttcaatatcggattgtttttgtttttatctgaaaat 44296260  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 42822659 - 42822723
Alignment:
Q  307 gctatagcactgttgcttagcggaattaaaacaaaccgttattttcagtgatctgcaattgacaa 371  Q
    |||||||||||||||| ||| ||||||  ||||||| | ||||||| |  |||||||||||||||    
T  42822659 gctatagcactgttgcatagtggaatttgaacaaactgatattttccgctatctgcaattgacaa 42822723  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 7991592 - 7991656
Alignment:
Q  307 gctatagcactgttgcttagcggaattaaaacaaaccgttattttcagtgatctgcaattgacaa 371  Q
    ||||||||| |||||||||| ||||||| ||||||||| ||||| | ||||||||||||||||||    
T  7991592 gctatagcagtgttgcttagtggaattataacaaaccgctatttaccgtgatctgcaattgacaa 7991656  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 372
Target Start/End: Complemental strand, 32736087 - 32736023
Alignment:
Q  308 ctatagcactgttgcttagcggaattaaaacaaaccgttattttcagtgatctgcaattgacaaa 372  Q
    |||||||| |||||| ||||||||||  ||||||||| ||||| | |||||||||||||||||||    
T  32736087 ctatagcagtgttgcgtagcggaatttgaacaaaccgctatttcccgtgatctgcaattgacaaa 32736023  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 371
Target Start/End: Complemental strand, 9634935 - 9634871
Alignment:
Q  307 gctatagcactgttgcttagcggaattaaaacaaaccgttattttcagtgatctgcaattgacaa 371  Q
    ||||||||| |||||| ||||||||||  ||||||||| ||||||| || |||||||||||||||    
T  9634935 gctatagcaatgttgcgtagcggaatttgaacaaaccgctattttctgtaatctgcaattgacaa 9634871  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 296
Target Start/End: Original strand, 28585840 - 28585873
Alignment:
Q  263 gatacgcttttagtacaaaatattgtgaaatagc 296  Q
    ||||||||||||| ||||||||||||||||||||    
T  28585840 gatacgcttttaggacaaaatattgtgaaatagc 28585873  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 372
Target Start/End: Original strand, 1813545 - 1813608
Alignment:
Q  309 tatagcactgttgcttagcggaattaaaacaaaccgttattttcagtgatctgcaattgacaaa 372  Q
    |||||||||||||  ||||||||||  |||||||| |||||||| |||||||||||| ||||||    
T  1813545 tatagcactgttgtgtagcggaatttgaacaaaccattattttccgtgatctgcaatcgacaaa 1813608  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 18180458 - 18180509
Alignment:
Q  271 tttagtacaaaatattgtgaaatagcgtcgctataggctatagcactgttgc 322  Q
    ||||||| |||||||||| ||| |||| ||||||||||||||||||||||||    
T  18180458 tttagtataaaatattgtcaaacagcggcgctataggctatagcactgttgc 18180509  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 371
Target Start/End: Complemental strand, 10156653 - 10156606
Alignment:
Q  324 tagcggaattaaaacaaaccgttattttcagtgatctgcaattgacaa 371  Q
    ||||| |||| |||||||||| ||||||| ||||||||||||||||||    
T  10156653 tagcgaaattcaaacaaaccgctattttcggtgatctgcaattgacaa 10156606  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 376
Target Start/End: Original strand, 23832214 - 23832252
Alignment:
Q  338 caaaccgttattttcagtgatctgcaattgacaaaacta 376  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  23832214 caaaccgttattttccgtgatctgcaattgacaacacta 23832252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 352
Target Start/End: Complemental strand, 30617302 - 30617211
Alignment:
Q  263 gatacgcttttagtacaaaatattgtgaaatagcgtcgctatag----gctatagcactgttgcttagcggaattaaaacaaaccgttattttc 352  Q
    |||||||| |||||||||||||||||||||||  || || ||||    ||||||||| |||||| ||| ||||||  ||||||||| |||||||    
T  30617302 gatacgctattagtacaaaatattgtgaaata--gtggcaatagcgatgctatagcattgttgcgtagtggaatttgaacaaaccgctattttc 30617211  T

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