View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2990_low_3 (Length: 386)
Name: NF2990_low_3
Description: NF2990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2990_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 2788960 - 2789337
Alignment:
| Q |
1 |
ttttgttaccggtataccacatttagaggaacttcacaatcttgattcttgagcatagaatcggtgatatgacgtaccgttacaaatcaattctattttg |
100 |
Q |
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| T |
2788960 |
ttttgttaccggcataccacatttagaggaacttcacaatcttgattcttgagcatagaatcggtgatatgacgtaccgttacaaatcaattctattttg |
2789059 |
T |
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| Q |
101 |
gtcatacgagcttatgtattataagctatctgctataagttaacaattttaccttgcaaaatagaggctatgtagcaagaaaa-aagtagttaaaaggat |
199 |
Q |
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| T |
2789060 |
gtcatacgagcttatgtattataagctatctgctataagttaacagttttaccttgcaaaatagaggctatgtagcaagaaaaaaagtagttaaaaggat |
2789159 |
T |
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| Q |
200 |
aaaaatggatgcatgtttgtcttttttatattttattgaaaggttattaacttgttaataacaatcatggttttatatgcttgatagttgactgaacttc |
299 |
Q |
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| T |
2789160 |
aaaaatggatgcatgtttgtcttttttatattttattgaaaggttattaacttgttgttaacaatcatggttttatatgcttgatagttgactgaacttc |
2789259 |
T |
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| Q |
300 |
aactttctctcgagtctgaaaacctcatctccgaacttgtcaaattccttgattctttatcggatgctgcactctctg |
377 |
Q |
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| T |
2789260 |
aactttctctcgagtctgaaaacctcatctccgaacttgtcaaattccttgattctttaccggatgctgcactctctg |
2789337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 87 - 377
Target Start/End: Complemental strand, 2417433 - 2417141
Alignment:
| Q |
87 |
tcaattctattttggtcatacg--agcttatgtattataagctatctgctataagttaacaattttaccttgcaaaatagaggctatgtagcaagaaaaa |
184 |
Q |
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| T |
2417433 |
tcaattctattttgctcatatgtgagctcatgtgttataagctatatgctattagttaacagttttacctagcgaaataaaggctatgtagcaagaaaaa |
2417334 |
T |
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| Q |
185 |
agtagttaaaaggataaaaatggatgcatgtttgtcttttttatattttattgaaaggttattaacttgttaataacaatcatggttttatatgcttgat |
284 |
Q |
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| T |
2417333 |
agaagttgaaaggataaaaatggatgcatgtttgtcttttttatattttattgaaaggttattaacttgctgttaacaatcatggttttatatgcttcgt |
2417234 |
T |
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| Q |
285 |
agttgactgaacttcaactttctctcgagtctgaaaacctcatctccgaacttgtcaaattccttgattctttatcggatgctgcactctctg |
377 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||| |||||| ||||||| |
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| T |
2417233 |
agtttactgaacttcaactttctctcgagtctgaaaacctcatctcagagcttgtcaaattccttgattcttcatcggttgctgctctctctg |
2417141 |
T |
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