View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2990_low_5 (Length: 293)
Name: NF2990_low_5
Description: NF2990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2990_low_5 |
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| [»] scaffold0415 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 2830428 - 2830696
Alignment:
| Q |
18 |
gaaaggtcgttcagttttacctcgtaatcagttttagttgactgaagctcttcttggactttatgcagcatttcttccagtatagttttctgcgatcgta |
117 |
Q |
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| T |
2830428 |
gaaaggtcgttcagttttacctcgtaatcagttttagttgactgaagctcttcttggactttatgcagcatttcttccagtatagttttctgcgatcgta |
2830527 |
T |
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| Q |
118 |
gttcacatgcttctgtcaaagctctcaaggtagccttctcattttcatcaaaggtagaagtcatttgcattgagagtctctggaattcctcttgaagcct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2830528 |
gttcacatgcttctgtcaaagctctcaaggtagccttctcattttcatcaaaggtagaagtcatttgcattgagagtctctggaattcctcttgaagcct |
2830627 |
T |
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| Q |
218 |
ttcagctgtattagcatttttcagtctggtctttcgcaacgcatcctcggcttggatggctctctgctc |
286 |
Q |
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| T |
2830628 |
ttcagctgtattagcatttttcagtctggtctttcgcaacgcatcctcggcttggatggctctttgctc |
2830696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 288
Target Start/End: Complemental strand, 4703 - 4442
Alignment:
| Q |
27 |
ttcagttttacctcgtaatcagttttagttgactgaagctcttcttggactttatgcagcatttcttccagtatagttttctgcgatcgtagttcacatg |
126 |
Q |
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| T |
4703 |
ttcagttttacctcataatcggctttgactgattcaagctcttctttgactttacgcagcatttcctccagcagtctcttctgcacacgaagttcacttg |
4604 |
T |
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| Q |
127 |
cttctgtcaaagctctcaaggtagccttctcattttcatcaaaggtagaagtcatttgcattgagagtctctggaattcctcttgaagcctttcagctgt |
226 |
Q |
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| T |
4603 |
cttctgtcagcgctctcctggtagccgtctcatttgcatcaaatgtagtggccatctgcattgatagccttttaaattcttcttgaagcctctctgcagt |
4504 |
T |
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| Q |
227 |
attagcatttttcagtctggtctttcgcaacgcatcctcggcttggatggctctctgctcct |
288 |
Q |
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| T |
4503 |
attagcatttttaagtctggtgtttcgcaaagcttcctcagctcgaatggctctttgctcct |
4442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 288
Target Start/End: Complemental strand, 40800072 - 40799811
Alignment:
| Q |
27 |
ttcagttttacctcgtaatcagttttagttgactgaagctcttcttggactttatgcagcatttcttccagtatagttttctgcgatcgtagttcacatg |
126 |
Q |
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|||||||||||||| ||||| | ||| ||| | ||||||||||| ||||||| |||||||||| ||||| | | |||||| || ||||||| || |
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| T |
40800072 |
ttcagttttacctcataatcggctttgactgattcaagctcttctttgactttacgcagcatttcctccagcagtctcttctgcacacgaagttcacttg |
40799973 |
T |
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| Q |
127 |
cttctgtcaaagctctcaaggtagccttctcattttcatcaaaggtagaagtcatttgcattgagagtctctggaattcctcttgaagcctttcagctgt |
226 |
Q |
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||||||||| |||||| ||||||| |||||||| ||||||| |||| | ||| |||||||| || || | ||||| ||||||||||| || || || |
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| T |
40799972 |
cttctgtcagcgctctcctggtagccgtctcatttgcatcaaatgtagtggccatctgcattgatagccttttaaattcttcttgaagcctctctgcagt |
40799873 |
T |
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| Q |
227 |
attagcatttttcagtctggtctttcgcaacgcatcctcggcttggatggctctctgctcct |
288 |
Q |
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|||||||||||| |||||||| |||||||| || ||||| ||| | |||||||| ||||||| |
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| T |
40799872 |
attagcatttttaagtctggtgtttcgcaaagcttcctcagctcgaatggctctttgctcct |
40799811 |
T |
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