View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2990_low_6 (Length: 288)

Name: NF2990_low_6
Description: NF2990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2990_low_6
NF2990_low_6
[»] chr1 (3 HSPs)
chr1 (10-288)||(2346569-2346847)
chr1 (257-288)||(6301177-6301208)
chr1 (238-279)||(2346807-2346848)
[»] chr5 (2 HSPs)
chr5 (18-288)||(30321399-30321673)
chr5 (10-50)||(30321408-30321448)
[»] chr2 (2 HSPs)
chr2 (45-288)||(3648879-3649123)
chr2 (10-50)||(3648888-3648928)
[»] chr6 (6 HSPs)
chr6 (71-288)||(25335223-25335435)
chr6 (200-288)||(2197566-2197654)
chr6 (200-288)||(24200113-24200201)
chr6 (18-79)||(25331774-25331835)
chr6 (10-50)||(2197605-2197645)
chr6 (10-50)||(24200122-24200162)
[»] chr3 (2 HSPs)
chr3 (200-288)||(11307377-11307465)
chr3 (10-50)||(11307416-11307456)
[»] scaffold0286 (2 HSPs)
scaffold0286 (227-288)||(22620-22682)
scaffold0286 (10-50)||(22629-22669)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 10 - 288
Target Start/End: Complemental strand, 2346847 - 2346569
Alignment:
Q  10 aagaatattataaatggctgattggcaaagaatatcaaaaacgataatcatgggctgattggcaaggtttttattaaactgttctttcttttcaataaat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2346847 aagaatattataaatggctgattggcaaagaatatcaaaaacgataatcatgggctgattggcaaggtttttattaaactgttctttcttttcaataaat 2346748  T
Q  110 ttcattgaaatgtgccatttttattttaggacagnnnnnnnntgggaattgaagctgattaattggaattaaaaattaaccacacaaaaattaattggaa 209  Q
    ||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2346747 ttcattgaaatgtgccatttttattttaggacagaaaaaaaatgggaattgaagctgattaattggaattaaaaattaaccacacaaaaattaattggaa 2346648  T
Q  210 ttaaatacgtatcattaagttcattagtaaagaatatcataaatggatgattgacaaagaatatcaaaaatatgatttc 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2346647 ttaaatacgtatcattaagttcattagtaaagaatatcataaatggatgattgacaaagaatatcaaaaatatgatttc 2346569  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 257 - 288
Target Start/End: Original strand, 6301177 - 6301208
Alignment:
Q  257 tgattgacaaagaatatcaaaaatatgatttc 288  Q
    ||||||||||||||||||||||||||||||||    
T  6301177 tgattgacaaagaatatcaaaaatatgatttc 6301208  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 2346848 - 2346807
Alignment:
Q  238 aaagaatatcataaatggatgattgacaaagaatatcaaaaa 279  Q
    ||||||||| |||||||| |||||| ||||||||||||||||    
T  2346848 aaagaatattataaatggctgattggcaaagaatatcaaaaa 2346807  T

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Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 30321673 - 30321399
Alignment:
Q  18 tataaatggctgattggcaaagaatatcaaaaacgataatcatgggctgattggcaaggtttttattaaactgttctttcttttcaataaatttcattga 117  Q
    |||| |||| |||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  30321673 tatagatggttgattggcaaagaatatcaaaaacaataatcatgggctgattgataaggtttttattaaactgttctttcttttcaataaatttcattga 30321574  T
Q  118 aatgtgccatttttattttaggacagnnnnnnnnt---gggaattgaagctgattaattggaattaaaaattaaccacacaaaaattaattggaattaaa 214  Q
    ||||||| ||||||||||||||||||            |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  30321573 aatgtgctatttttattttaggacagaaaaaaaaaaaagggaattgaagctgattaattggaattaaaaattaacctcaaaaaaattaattggaattaaa 30321474  T
Q  215 tacgtatcattaagttcattagt-aaagaatatcataaatggatgattgacaaagaatatcaaaaatatgatttc 288  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30321473 tacgtatcattaagttcattagtcaaagaatatcataaatggatgattgacaaagaatatcaaaaatatgatttc 30321399  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 30321448 - 30321408
Alignment:
Q  10 aagaatattataaatggctgattggcaaagaatatcaaaaa 50  Q
    |||||||| |||||||| |||||| ||||||||||||||||    
T  30321448 aagaatatcataaatggatgattgacaaagaatatcaaaaa 30321408  T

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Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 45 - 288
Target Start/End: Complemental strand, 3649123 - 3648879
Alignment:
Q  45 caaaaacgataatcatgggctgattggcaaggtttttattaaactgttctttcttttcaataaatttcattgaaatgtgccatttttattttaggacagn 144  Q
    |||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  3649123 caaaaacgataaccatgggctgataggcaaggattttattaaactgttctttcttttcaataaatttcattgaaatgtgctatttttattttaggacaga 3649024  T
Q  145 nnnnnnn-tgggaattgaagctgattaattggaattaaaaattaaccacacaaaaattaattggaattaaatacgtatcattaagttcattagt-aaaga 242  Q
            |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||| |||||    
T  3649023 aaaaaaaatgggaattgaagctgattaattggaattaaaaattaaccaca-aaaaatgaattggaattaaataggtatcattaagttcattagtcaaaga 3648925  T
Q  243 atatcataaatggatgattgacaaagaatatcaaaaatatgatttc 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3648924 atatcataaatggatgattgacaaagaatatcaaaaatatgatttc 3648879  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 3648928 - 3648888
Alignment:
Q  10 aagaatattataaatggctgattggcaaagaatatcaaaaa 50  Q
    |||||||| |||||||| |||||| ||||||||||||||||    
T  3648928 aagaatatcataaatggatgattgacaaagaatatcaaaaa 3648888  T

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Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 71 - 288
Target Start/End: Original strand, 25335223 - 25335435
Alignment:
Q  71 gcaaggtttttattaaactgttctttcttttcaataaatttcattgaaatgtgccatttttattttaggacagnnnnnnnn---tgggaattgaagctga 167  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||           ||||| ||||||||||    
T  25335223 gcaaagtttttattaaactgttctttcttttcaataaatttcattgaaatgtgctatttttattttaggacagaaaaaagaaaatgggagttgaagctga 25335322  T
Q  168 ttaattggaattaaaaattaaccacacaaaaattaattggaattaaatacgtatcattaagttcattagt-aaagaatatcataaatggatgattgacaa 266  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||          |||||||    
T  25335323 ttaattggaattaaaaattaaccacaaaaaaattaattgaaattaaatacgtatcattaagttcattagtcaaagaatatcat---------tttgacaa 25335413  T
Q  267 agaatatcaaaaatatgatttc 288  Q
    ||||||||||||||||||||||    
T  25335414 agaatatcaaaaatatgatttc 25335435  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 2197566 - 2197654
Alignment:
Q  200 ttaattggaattaaatacgtatcattaagttcattagt-aaagaatatcataaatggatgattgacaaagaatatcaaaaatatgatttc 288  Q
    ||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  2197566 ttaattggaattaaaaacgtatcatta-gttcattagtcaaagaatatcataaatgggtgattggcaaagaatatcaaaaatatgatttc 2197654  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 200 - 288
Target Start/End: Complemental strand, 24200201 - 24200113
Alignment:
Q  200 ttaattggaattaaatacgtatcattaagttcattagt-aaagaatatcataaatggatgattgacaaagaatatcaaaaatatgatttc 288  Q
    ||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  24200201 ttaattggaattaaaaacgtatcatta-gttcattagtcaaagaatatcataaatgggtgattggcaaagaatatcaaaaatatgatttc 24200113  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 25331835 - 25331774
Alignment:
Q  18 tataaatggctgattggcaaagaatatcaaaaacgataatcatgggctgattggcaaggttt 79  Q
    |||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  25331835 tatagatggttgattgacaaagaatatcaaaaacgataatcatgggctgattggcaaagttt 25331774  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 2197605 - 2197645
Alignment:
Q  10 aagaatattataaatggctgattggcaaagaatatcaaaaa 50  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  2197605 aagaatatcataaatgggtgattggcaaagaatatcaaaaa 2197645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 24200162 - 24200122
Alignment:
Q  10 aagaatattataaatggctgattggcaaagaatatcaaaaa 50  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  24200162 aagaatatcataaatgggtgattggcaaagaatatcaaaaa 24200122  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 11307377 - 11307465
Alignment:
Q  200 ttaattggaattaaatacgtatcattaagttcattagt-aaagaatatcataaatggatgattgacaaagaatatcaaaaatatgatttc 288  Q
    ||||| ||||||||| | ||||||||| ||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11307377 ttaatcggaattaaaaatgtatcatta-gttgattagtcaaagaatatcataaatggatgattggcaaagaatatcaaaaatatgatttc 11307465  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 11307416 - 11307456
Alignment:
Q  10 aagaatattataaatggctgattggcaaagaatatcaaaaa 50  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  11307416 aagaatatcataaatggatgattggcaaagaatatcaaaaa 11307456  T

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Target: scaffold0286 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 22682 - 22620
Alignment:
Q  227 agttcattagt-aaagaatatcataaatggatgattgacaaagaatatcaaaaatatgatttc 288  Q
    ||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  22682 agttcattagtcaaagaatatcataaatgggtgattggcaaagaatatcaaaaatatgatttc 22620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 22669 - 22629
Alignment:
Q  10 aagaatattataaatggctgattggcaaagaatatcaaaaa 50  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  22669 aagaatatcataaatgggtgattggcaaagaatatcaaaaa 22629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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