View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2990_low_7 (Length: 274)
Name: NF2990_low_7
Description: NF2990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2990_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 27612811 - 27612536
Alignment:
| Q |
1 |
aactcttcagcaaccaacgttctctcagattaatttctcctctatttgtttcttcttcccgtacaagtttccttggttgcaaccacagtctcaaaccacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27612811 |
aactcttcagcaaccaacgttctctcagattaatttctcctctatttgtttcttcttcccgtacaagtttccttggttgcaaccacagtctcaaaccacc |
27612712 |
T |
|
| Q |
101 |
tacatctttatcttca------gcttcatcacttcgttctcgaaataaacggaacaagttaggacttcttcgtcttcattctccgcggtttgtattcaaa |
194 |
Q |
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|
|||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27612711 |
tacatcttcatcttcatcttcagcttcatcacttcgttctccaaataaacggaacaagttaggacttcttcgtcttcattctccgcggtttgtattcaaa |
27612612 |
T |
|
| Q |
195 |
gctgctttaaactctcaacttattgttgttgttgtcgttgttactttatctgctgtttcttggattcatttcactc |
270 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27612611 |
gctgctttaaactctcaacttattgttgttgttgtcgttgttactttatctgctgtttcttggattcatttcactc |
27612536 |
T |
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