View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2990_low_9 (Length: 260)
Name: NF2990_low_9
Description: NF2990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2990_low_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 2788498 - 2788742
Alignment:
| Q |
16 |
gtgccttttattgttcctgaagtaaattactttaatctatgtaaatttcagtttcaacttctctcttatcttaattttcttttcctattcatgaatttta |
115 |
Q |
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| T |
2788498 |
gtgccttttattgttcctgaagtaaattactttaatctatgtaaatttcagtttcaacttctctcttatcttaattttcttttcctattcatgaatttta |
2788597 |
T |
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| Q |
116 |
gttttagataaaaaatccaaatcggaaccaacatataactgtataaatttaaaaaatctataacgaagttcaacaatttttaaatgaattcgaatcgaca |
215 |
Q |
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| T |
2788598 |
gttttagattaaaaatccaaattggaaccaacatataactgtataaatttaaaaaatctataacgaagttcaacaatttttaaatgaattcgaatcgaca |
2788697 |
T |
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| Q |
216 |
cactgatgatctgaacaaatcaagagagaagatagaatgaaaacc |
260 |
Q |
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| T |
2788698 |
cactgatgatctgaacaaatcaagagagaagatagaatgaaaacc |
2788742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 46121520 - 46121425
Alignment:
| Q |
38 |
taaattactttaatctatgtaaatttcagtttcaacttctctcttatcttaattttcttttcctattcatgaattttagttttagataaaaaatccaaat |
137 |
Q |
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| T |
46121520 |
taaattactttaat-tatgtcaatttcattttcaactcctctcttatctttattttttttgc----ttatcaattttagttttagataaaaagtctaaat |
46121426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 22365227 - 22365469
Alignment:
| Q |
16 |
gtgccttttattgttcctgaagtaaattactttaatctatgtaaatttcagtttcaacttctctcttatcttaattttcttttcctattcatgaatttta |
115 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
22365227 |
gtgctttttattgttccttaagtaaattactttaatctatgtaaatttcagtttcaacttctctattatcttgattttcttttcctattcatgaatttta |
22365326 |
T |
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| Q |
116 |
gttttagataaaaaatccaaatcggaaccaacatataactgtataaatttaaaaaatctataacgaagttcaacaatttttaaatgaattcgaatcgaca |
215 |
Q |
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||||||||| |||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| |
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| T |
22365327 |
gttttagatcaaaagtccaaattggaactaacatataactgtataaatttaaaaaatctataacgatgttcaacaatttttcaatgaattcaaatcgaca |
22365426 |
T |
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| Q |
216 |
cactgatgatctgaacaaatcaagagagaagatagaatgaaaa |
258 |
Q |
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| T |
22365427 |
aactgatgatctgaacaaatcaagagagaagatagaatgaaaa |
22365469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 29782312 - 29782217
Alignment:
| Q |
38 |
taaattactttaatctatgtaaatttcagtttcaacttctctcttatcttaattttcttttcctattcatgaattttagttttagataaaaaatccaaat |
137 |
Q |
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|||||||||||||| ||||| ||||||| |||||||| |||||||||||| ||||| ||| | | || ||||||||||||||||||||| || |||| |
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| T |
29782312 |
taaattactttaat-tatgtcaatttcattttcaactcctctcttatctttattttttttgc----ttatcaattttagttttagataaaaagtctaaat |
29782218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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