View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2991_high_1 (Length: 442)
Name: NF2991_high_1
Description: NF2991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2991_high_1 |
 | |
|
| [»] scaffold1036 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 166 - 421
Target Start/End: Original strand, 17448579 - 17448834
Alignment:
| Q |
166 |
tagagttctcaagaaatttggatttaatgatacattctgcagttggattgaggccatcctttattctgctactatctcaattaacatcaatggcaaccaa |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17448579 |
tagagttctcaagaaatttggatttaatgatacattctgcagttggattgaggccatcctttattctgctactatctcaattaacatcaatggcaaccaa |
17448678 |
T |
|
| Q |
266 |
caaggctactttaaatgcaacatgaggggtgaggcaaggtgaccctttgtctcctctcttattatgcatagcagaatatgttcttagtaggtttgtccaa |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17448679 |
caaggctactttaaatgcaacatgaggggtgaggcaaggtgaccctttgtctcctctcttattctgcatagcagaatatgttcttagtaggtttgtccaa |
17448778 |
T |
|
| Q |
366 |
acttgtagagcaaggcaacctggatcagatggctggaacaagaaacactaaggtac |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17448779 |
acttgtagagcaaggcaacctggatcagatggctggaacaagaaacactaaggtac |
17448834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 17448445 - 17448568
Alignment:
| Q |
5 |
gaggagcagagagggttcataaagggtagaaatcttaagggttgtgtttgtttagcttcaaaagcagtcaatataatggataacatggcttatggtggta |
104 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17448445 |
gaggagcaaagagggttcttaaagggtagaaatcttaagggttgtgtttgtttagcttcaaaagcagtcaatataatggataacagggcttatggtggta |
17448544 |
T |
|
| Q |
105 |
atctagctttaaaagtttacatta |
128 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
17448545 |
atctagcattaaaagtttacatta |
17448568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1036 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold1036
Description:
Target: scaffold1036; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 5 - 409
Target Start/End: Complemental strand, 2650 - 2245
Alignment:
| Q |
5 |
gaggagcagagagggttcataaagggtagaaatcttaagggttgtgtttgtttagcttcaaaagcagtcaatataatggataacatggcttatggtggta |
104 |
Q |
| |
|
|||||||| |||||||||||| | || || || |||| | |||||| |||||||| || ||||| ||||| | |||||||| | ||||||||||| | |
|
|
| T |
2650 |
gaggagcaaagagggttcatacaaggaaggaacattaaagattgtgtctgtttagcatccgaagcaatcaatctgatggataagagagcttatggtggga |
2551 |
T |
|
| Q |
105 |
atctagctttaaaagtttacattagcaaagcatttaatactttggagtggagcttcttgcttagagttctcaagaaatttggatttaatgatacattctg |
204 |
Q |
| |
|
|||| ||||||||||| |||| | ||||| ||| | ||||||||||||||||| || |||| |||||||| ||||||||| || | ||| | ||| || |
|
|
| T |
2550 |
atctcgctttaaaagtggacatcaataaagcttttgacactttggagtggagctttttacttaaagttctcaggaaatttgggttcagtgaaaaattttg |
2451 |
T |
|
| Q |
205 |
cagttggattgaggccatcctttattctgctactatctcaattaacatcaatggcaaccaacaaggctactttaaatgcaacatgaggggtgaggcaagg |
304 |
Q |
| |
|
|||||| ||||| ||| | ||||| || |||||||| || |||||||||| |||||||| || || ||||| || | ||||| ||||| || |
|
|
| T |
2450 |
tgattggatcatagccattcttcactctgcaaccatctcaatcaatatcaatggcacacaacaaggatatttcaaatg-ttcaaggggggtcaggcaggg |
2352 |
T |
|
| Q |
305 |
tgaccctttgtctcctctcttattatgcatagcagaatatgttcttagtag--gtttgtccaaacttgtagagcaaggcaacctggatcagatggctgga |
402 |
Q |
| |
|
|||||| ||||||||| | || |||||||||||| |||||||||| || ||||| ||||||||| ||||||||||| ||||| || ||| |||| |
|
|
| T |
2351 |
agaccctccgtctcctcttcttttctgcatagcagaagatgttcttagcaggagtttgagcaaacttgtggagcaaggcaagctggaacaaatgaatgga |
2252 |
T |
|
| Q |
403 |
acaagaa |
409 |
Q |
| |
|
||||||| |
|
|
| T |
2251 |
acaagaa |
2245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 406
Target Start/End: Original strand, 11413282 - 11413642
Alignment:
| Q |
47 |
tgtgtttgtttagcttcaaaagcagtcaatataatggataacatggcttatggtggtaatctagctttaaaagtttacattagcaaagcatttaatactt |
146 |
Q |
| |
|
||||| |||||||| || ||| | ||||| | |||||||| | ||||||||||| ||||| ||||||||||| |||| || ||||| ||| | |||| |
|
|
| T |
11413282 |
tgtgtctgtttagcatctgaagtaatcaatttgatggataagagagcttatggtgggaatcttgctttaaaagtggacatcagtaaagcttttgacactt |
11413381 |
T |
|
| Q |
147 |
tggagtggagcttcttgcttagagttctcaagaaatttggatttaatgatacattctgcagttggattgaggccatcctttattctgctactatctcaat |
246 |
Q |
| |
|
||||||| ||||| || || | |||||||| ||||||||| || | ||| | || || |||||| ||||| ||| | ||||| || |||||||| |
|
|
| T |
11413382 |
tggagtgaagctttttactcaaagttctcaggaaatttgggttcagtgaaattttttgtgattggatcatagccattcttcactctgcaaccatctcaat |
11413481 |
T |
|
| Q |
247 |
taacatcaatggcaaccaacaaggctactttaaatgcaacatgaggggtgaggcaaggtgaccctttgtctcctctcttattatgcatagcagaatatgt |
346 |
Q |
| |
|
|| |||||||||| |||||||| || || ||||| || | ||||| ||||| || |||||| |||| ||||| | || |||||||||||| |||| |
|
|
| T |
11413482 |
caatatcaatggcacacaacaaggatatttcaaatg-ttcaaggggggtcaggcagggagaccctctgtcccctcttcttttctgcatagcagaagatgt |
11413580 |
T |
|
| Q |
347 |
tcttagtag--gtttgtccaaacttgtagagcaaggcaacctggatcagatggctggaacaa |
406 |
Q |
| |
|
|||||| || ||||| ||||||||| ||||||||||| ||||| || ||| |||||||| |
|
|
| T |
11413581 |
tcttagcaggagtttgagcaaacttgtggagcaaggcaagctggaacaaatgaatggaacaa |
11413642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University