View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2991_high_4 (Length: 388)

Name: NF2991_high_4
Description: NF2991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2991_high_4
NF2991_high_4
[»] chr1 (9 HSPs)
chr1 (13-370)||(145058-145415)
chr1 (255-370)||(36686787-36686902)
chr1 (292-370)||(27417368-27417446)
chr1 (257-364)||(11443959-11444066)
chr1 (285-364)||(18640455-18640534)
chr1 (319-370)||(27317735-27317786)
chr1 (255-364)||(18643142-18643251)
chr1 (306-364)||(18188143-18188201)
chr1 (255-331)||(11441588-11441664)
[»] chr7 (6 HSPs)
chr7 (254-370)||(42939911-42940026)
chr7 (278-370)||(42937611-42937702)
chr7 (277-362)||(35338915-35339000)
chr7 (162-199)||(34323849-34323886)
chr7 (306-370)||(20125345-20125409)
chr7 (162-201)||(7281677-7281716)
[»] chr8 (5 HSPs)
chr8 (255-364)||(29185462-29185571)
chr8 (255-354)||(22274876-22274974)
chr8 (162-195)||(15008901-15008934)
chr8 (13-81)||(10736336-10736404)
chr8 (306-370)||(23429713-23429777)
[»] chr5 (11 HSPs)
chr5 (255-370)||(29742060-29742174)
chr5 (255-364)||(40786751-40786860)
chr5 (285-370)||(17627311-17627393)
chr5 (306-365)||(17935641-17935700)
chr5 (303-370)||(18079930-18079996)
chr5 (271-329)||(24228224-24228282)
chr5 (310-365)||(17964401-17964456)
chr5 (255-360)||(24213214-24213320)
chr5 (255-316)||(32928937-32928998)
chr5 (162-195)||(40788554-40788587)
chr5 (308-360)||(12026257-12026309)
[»] chr4 (7 HSPs)
chr4 (255-370)||(12753605-12753721)
chr4 (251-301)||(28874324-28874374)
chr4 (162-201)||(2927414-2927453)
chr4 (277-370)||(17349955-17350047)
chr4 (277-330)||(8563660-8563713)
chr4 (252-322)||(46694136-46694205)
chr4 (309-358)||(20355042-20355091)
[»] scaffold0066 (1 HSPs)
scaffold0066 (253-349)||(11759-11855)
[»] chr2 (9 HSPs)
chr2 (285-365)||(7384758-7384838)
chr2 (306-364)||(25232135-25232193)
chr2 (322-364)||(19084617-19084660)
chr2 (167-201)||(19086011-19086045)
chr2 (255-332)||(7394664-7394741)
chr2 (306-364)||(25225830-25225888)
chr2 (322-361)||(19089648-19089688)
chr2 (13-81)||(19910170-19910238)
chr2 (17-81)||(21292751-21292815)
[»] chr3 (5 HSPs)
chr3 (261-370)||(38419932-38420041)
chr3 (256-369)||(15636203-15636316)
chr3 (312-364)||(20463109-20463161)
chr3 (162-233)||(12989490-12989560)
chr3 (308-370)||(10937414-10937476)
[»] chr6 (3 HSPs)
chr6 (306-370)||(25398244-25398308)
chr6 (306-364)||(17275071-17275129)
chr6 (326-364)||(17270156-17270194)


Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 370
Target Start/End: Original strand, 145058 - 145415
Alignment:
Q  13 aaaatatacataaaattattgttatccttaaggtggtcaagttttaagatcaatatttgtttgagaccttgaaattgttaagacatacatttagaagcaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  145058 aaaatatacataaaattattgttatccttaaggtggtcaagttttaagatcaatatttgtttgagaccttgaaattgttaagacatacatttagaagcaa 145157  T
Q  113 tcaataatttaagtttcatttatggtattttttcaactaaannnnnnn-caattcaacacaatattgttcttaaatcttaatctattaaacaaaacaatt 211  Q
    ||||||||| ||||||||||||||||||||||| ||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  145158 tcaataattcaagtttcatttatggtatttttttaactaatttttttttcaattcaacacaatattgttcttaaatcttaatctattaaacaaaacaatt 145257  T
Q  212 attgtcagattcacaattataaatcttaatatagattggaaattgttatgaaattcatccttaacattgcaatatattttaaagtatatatgaatagaga 311  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  145258 attgtcaaattcacaattataaatcttaatatagattggaaattgttatgaaattcatccttaacattgtaatatattttaaagtatatatgaatagaga 145357  T
Q  312 gaaaggaataaagagagaacaagagagtatagtgtattgcttctcaagtgtgtcattac 370  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  145358 gaaagg-ataaagagagaacaagagagtatagtgtattgcttctcaagtgtgtcattac 145415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 255 - 370
Target Start/End: Complemental strand, 36686902 - 36686787
Alignment:
Q  255 tgttatgaaattcatccttaacattgcaatatattttaaagtatatatgaatagagagaaaggaataaagagagaacaagagagtatagtgtattgcttc 354  Q
    |||||||||||| || ||||| ||||||| ||||| |||||||||||  |||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  36686902 tgttatgaaattgattcttaatattgcaagatattataaagtatataaaaatagagagaaaggaataaaaagagaataagagagtatagtgtattgcttc 36686803  T
Q  355 tcaagtgtgtcattac 370  Q
    ||||| ||||| ||||    
T  36686802 tcaagagtgtctttac 36686787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 292 - 370
Target Start/End: Original strand, 27417368 - 27417446
Alignment:
Q  292 aaagtatatatgaatagagagaaaggaataaagagagaacaagagagtatagtgtattgcttctcaagtgtgtcattac 370  Q
    |||||||||| ||||||||||||||||||||||||| || | ||||||||| |||||| ||||||||||||||| ||||    
T  27417368 aaagtatataagaatagagagaaaggaataaagagataagatgagagtatactgtattccttctcaagtgtgtctttac 27417446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 364
Target Start/End: Original strand, 11443959 - 11444066
Alignment:
Q  257 ttatgaaattcatccttaacattgcaatatattttaaagtatatatgaatagagagaaaggaataaagagagaacaagagagtatagtgtattgcttctc 356  Q
    |||||||||| || |||| ||||| |||||||| |||||||||||  ||||||||||| | || ||||  ||||||  |||||||| |||||| |||| |    
T  11443959 ttatgaaattgattcttagcattgtaatatattataaagtatataataatagagagaatgaaacaaaggaagaacataagagtatattgtattacttcac 11444058  T
Q  357 aagtgtgt 364  Q
    ||||||||    
T  11444059 aagtgtgt 11444066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 18640455 - 18640534
Alignment:
Q  285 atattttaaagtatatatgaatagagagaaaggaataaagagagaacaagagagtatagtgtattgcttctcaagtgtgt 364  Q
    ||||| |||| |||||| |||||||| |||||| ||||| ||||||||||| |||||| |||||| ||||  ||||||||    
T  18640455 atattgtaaaatatataagaatagagtgaaagggataaacagagaacaagatagtatattgtattacttcaaaagtgtgt 18640534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 370
Target Start/End: Complemental strand, 27317786 - 27317735
Alignment:
Q  319 ataaagagagaacaagagagtatagtgtattgcttctcaagtgtgtcattac 370  Q
    |||||| ||||||||||||||||| |||||| ||||||||||||||| ||||    
T  27317786 ataaagggagaacaagagagtatattgtattacttctcaagtgtgtctttac 27317735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 364
Target Start/End: Original strand, 18643142 - 18643251
Alignment:
Q  255 tgttatgaaattcatccttaacattgcaatatattttaaagtatatatgaatagagagaaaggaataaagagagaacaagagagtatagtgtattgcttc 354  Q
    |||||||||||| || |  || ||| ||| ||||| ||||||||||| |||||||  |||| | |||||||||||| || | |||||| |||||| ||||    
T  18643142 tgttatgaaattgattcaaaatattacaagatattgtaaagtatataagaatagattgaaaaggataaagagagaataacatagtatattgtattacttc 18643241  T
Q  355 tcaagtgtgt 364  Q
     |||||||||    
T  18643242 acaagtgtgt 18643251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 18188143 - 18188201
Alignment:
Q  306 tagagagaaaggaataaagagagaacaagagagtatagtgtattgcttctcaagtgtgt 364  Q
    |||||||||||| ||||||||| ||||| |||||||  | |||| ||||||||||||||    
T  18188143 tagagagaaagggataaagagataacaaaagagtatgttatattacttctcaagtgtgt 18188201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 331
Target Start/End: Original strand, 11441588 - 11441664
Alignment:
Q  255 tgttatgaaattcatccttaacattgcaatatattttaaagtatatatgaatagagagaaaggaataaagagagaac 331  Q
    |||| ||||||| ||  ||| |||||||| ||||| | |||||||||  ||||||||||| | ||||||||||||||    
T  11441588 tgttgtgaaattgatttttagcattgcaagatattatgaagtatataataatagagagaatgaaataaagagagaac 11441664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 254 - 370
Target Start/End: Complemental strand, 42940026 - 42939911
Alignment:
Q  254 ttgttatgaaattcatccttaacattgcaatatattttaaagtatatatgaatagagagaaaggaataaagagagaacaagagagtatagtgtattgctt 353  Q
    ||||||||||||| ||||  | |||||||| ||||| ||||||||||| ||||||||||||||| |||||| ||||||||||| ||||| |||||| |||    
T  42940026 ttgttatgaaattaatccaaagcattgcaagatattgtaaagtatataagaatagagagaaagg-ataaagggagaacaagagggtatattgtattactt 42939928  T
Q  354 ctcaagtgtgtcattac 370  Q
    | |||||||||||||||    
T  42939927 cacaagtgtgtcattac 42939911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 278 - 370
Target Start/End: Complemental strand, 42937702 - 42937611
Alignment:
Q  278 ttgcaatatattttaaagtatatatgaatagagagaaaggaataaagagagaacaagagagtatagtgtattgcttctcaagtgtgtcattac 370  Q
    |||||| ||||| ||||||||||| ||||||||||||||| ||||||  |||||||||||||||| |||||| ||||  ||||||||||||||    
T  42937702 ttgcaagatattgtaaagtatataagaatagagagaaagg-ataaaggaagaacaagagagtatattgtattacttcaaaagtgtgtcattac 42937611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 362
Target Start/End: Original strand, 35338915 - 35339000
Alignment:
Q  277 attgcaatatattttaaagtatatatgaatagagagaaaggaataaagagagaacaagagagtatagtgtattgcttctcaagtgt 362  Q
    ||||||| ||||| ||||||||||| ||||||||  ||||| |||||||||||| |||| |||||| ||||||  ||| |||||||    
T  35338915 attgcaagatattgtaaagtatataagaatagagttaaagggataaagagagaataagatagtatattgtattctttcacaagtgt 35339000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 34323886 - 34323849
Alignment:
Q  162 aattcaacacaatattgttcttaaatcttaatctatta 199  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  34323886 aattcaacacaatattgttcttaaatcttaatcaatta 34323849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 370
Target Start/End: Complemental strand, 20125409 - 20125345
Alignment:
Q  306 tagagagaaaggaataaagagagaacaagagagtatagtgtattgcttctcaagtgtgtcattac 370  Q
    |||||||||| | |||||  ||||||||||| ||||| |||||| |||| |||||||||||||||    
T  20125409 tagagagaaaaggataaatggagaacaagagggtatattgtattacttcacaagtgtgtcattac 20125345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 201
Target Start/End: Complemental strand, 7281716 - 7281677
Alignment:
Q  162 aattcaacacaatattgttcttaaatcttaatctattaaa 201  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  7281716 aattcaacaaaatattgatcttaaatcttaatctattaaa 7281677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 255 - 364
Target Start/End: Original strand, 29185462 - 29185571
Alignment:
Q  255 tgttatgaaattcatccttaacattgcaatatattttaaagtatatatgaatagagagaaaggaataaagagagaacaagagagtatagtgtattgcttc 354  Q
    |||||||||||| ||||  || ||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||| ||||||||| || ||| ||||    
T  29185462 tgttatgaaattaatccaaaatattgcaatatattgtaaagtatataagaatagagaaaaaggaataaagaaagaacatgagagtatattgcattacttc 29185561  T
Q  355 tcaagtgtgt 364  Q
     |||||||||    
T  29185562 acaagtgtgt 29185571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 255 - 354
Target Start/End: Complemental strand, 22274974 - 22274876
Alignment:
Q  255 tgttatgaaattcatccttaacattgcaatatattttaaagtatatatgaatagagagaaaggaataaagagagaacaagagagtatagtgtattgcttc 354  Q
    |||||||||||| ||||  | |||||||| ||||| ||||||||||| ||||||||||||||| |||||| ||||||| ||||||||| |||||| ||||    
T  22274974 tgttatgaaattaatccaaagcattgcaagatattgtaaagtatataagaatagagagaaagg-ataaagggagaacaggagagtatattgtattacttc 22274876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 15008934 - 15008901
Alignment:
Q  162 aattcaacacaatattgttcttaaatcttaatct 195  Q
    ||||||||||||||||||||||||||||||||||    
T  15008934 aattcaacacaatattgttcttaaatcttaatct 15008901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 10736404 - 10736336
Alignment:
Q  13 aaaatatacataaaattattgttatccttaaggtggtcaagttttaagatcaatatttgtttgagacct 81  Q
    |||||||||||||||||||||| |||||||  | ||||||||| || || ||||| ||| |||||||||    
T  10736404 aaaatatacataaaattattgtgatccttagcgaggtcaagttctaggagcaatacttgcttgagacct 10736336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 370
Target Start/End: Complemental strand, 23429777 - 23429713
Alignment:
Q  306 tagagagaaaggaataaagagagaacaagagagtatagtgtattgcttctcaagtgtgtcattac 370  Q
    |||||||||  | |||||| ||||||||||||||||| ||| || |||| |||||||||||||||    
T  23429777 tagagagaagaggataaagggagaacaagagagtatattgttttacttcacaagtgtgtcattac 23429713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 255 - 370
Target Start/End: Original strand, 29742060 - 29742174
Alignment:
Q  255 tgttatgaaattcatccttaacattgcaatatattttaaagtatatatgaatagagagaaaggaataaagagagaacaagagagtatagtgtattgcttc 354  Q
    |||||||||||| ||||    |||||||| ||||| ||||||||||| |||||||||||||||| ||||| |||||||| |||||||| |||||| ||||    
T  29742060 tgttatgaaattaatccaatgcattgcaaaatattgtaaagtatataagaatagagagaaagga-taaagggagaacaaaagagtatattgtattacttc 29742158  T
Q  355 tcaagtgtgtcattac 370  Q
     |||||||||||||||    
T  29742159 acaagtgtgtcattac 29742174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 255 - 364
Target Start/End: Complemental strand, 40786860 - 40786751
Alignment:
Q  255 tgttatgaaattcatccttaacattgcaatatattttaaagtatatatgaatagagagaaaggaataaagagagaacaagagagtatagtgtattgcttc 354  Q
    |||||||||||| || |||| |||||||| ||||| ||||||||||| |||||||||||||| || ||||||||||||  ||||| || |||||| ||||    
T  40786860 tgttatgaaattgattcttagcattgcaagatattataaagtatataagaatagagagaaagaaacaaagagagaacataagagtgtattgtattacttc 40786761  T
Q  355 tcaagtgtgt 364  Q
     |||||||||    
T  40786760 acaagtgtgt 40786751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 285 - 370
Target Start/End: Complemental strand, 17627393 - 17627311
Alignment:
Q  285 atattttaaagtatatatgaatagagagaaaggaataaagagagaacaagagagtatagtgtattgcttctcaagtgtgtcattac 370  Q
    ||||| ||||||||| | |||||||||||||||||||||||||||||     |||||| |||||| |||| |||||||||||||||    
T  17627393 atattgtaaagtatagaagaatagagagaaaggaataaagagagaac---tcagtatattgtattacttcacaagtgtgtcattac 17627311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 365
Target Start/End: Complemental strand, 17935700 - 17935641
Alignment:
Q  306 tagagagaaaggaataaagagagaacaagagagtatagtgtattgcttctcaagtgtgtc 365  Q
    |||||||||||| ||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  17935700 tagagagaaagggataaagagataacaaaagagtatgttgtattgcttctcaagtgtgtc 17935641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 303 - 370
Target Start/End: Original strand, 18079930 - 18079996
Alignment:
Q  303 gaatagagagaaaggaataaagagagaacaagagagtatagtgtattgcttctcaagtgtgtcattac 370  Q
    ||||||| |||||||| ||||| ||||||||||||||||| |||||| |||| |||||||||||||||    
T  18079930 gaatagaaagaaagga-taaagggagaacaagagagtatattgtattacttcacaagtgtgtcattac 18079996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 271 - 329
Target Start/End: Original strand, 24228224 - 24228282
Alignment:
Q  271 cttaacattgcaatatattttaaagtatatatgaatagagagaaaggaataaagagaga 329  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||| || |||||||||    
T  24228224 cttaacattgcaagatattataaagtatataagaatagagagaaagaaacaaagagaga 24228282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 310 - 365
Target Start/End: Complemental strand, 17964456 - 17964401
Alignment:
Q  310 gagaaaggaataaagagagaacaagagagtatagtgtattgcttctcaagtgtgtc 365  Q
    |||||||| || |||||| ||||| |||||||  ||||||||||||||||||||||    
T  17964456 gagaaagggatgaagagataacaaaagagtatgttgtattgcttctcaagtgtgtc 17964401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 360
Target Start/End: Original strand, 24213214 - 24213320
Alignment:
Q  255 tgttatgaaattcatccttaacattgcaatatattttaaagtatatatgaatagagagaaag-gaataaagagagaacaagagagtatagtgtattgctt 353  Q
    |||||||||||| ||||||| ||||| || ||||| |||||||||||  | |||||||||||  || ||||| ||||||  ||||| || |||||| |||    
T  24213214 tgttatgaaattgatccttagcattgtaagatattataaagtatataacattagagagaaagaaaaaaaagaaagaacataagagtgtattgtattactt 24213313  T
Q  354 ctcaagt 360  Q
    | |||||    
T  24213314 cacaagt 24213320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 32928998 - 32928937
Alignment:
Q  255 tgttatgaaattcatccttaacattgcaatatattttaaagtatatatgaatagagagaaag 316  Q
    |||| ||||||| ||| |||||||||||| ||||  ||||| ||||| ||||||||||||||    
T  32928998 tgttttgaaattgatcattaacattgcaagatatcataaagcatataagaatagagagaaag 32928937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 195
Target Start/End: Complemental strand, 40788587 - 40788554
Alignment:
Q  162 aattcaacacaatattgttcttaaatcttaatct 195  Q
    |||||||||||||||||||||||||| |||||||    
T  40788587 aattcaacacaatattgttcttaaattttaatct 40788554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 12026257 - 12026309
Alignment:
Q  308 gagagaaaggaataaagagagaacaagagagtatagtgtattgcttctcaagt 360  Q
    |||||||||| ||||||||||||||| |||||||   ||||| ||||||||||    
T  12026257 gagagaaagggataaagagagaacaaaagagtatgtcgtattacttctcaagt 12026309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 370
Target Start/End: Original strand, 12753605 - 12753721
Alignment:
Q  255 tgttatgaaattcatccttaacattgcaatatattttaaagtatatatgaatagagagaaaggaataaagagagaacaagagagtatagtgtat--tgct 352  Q
    |||||||||||| ||||  | |||||| | ||||| ||||||||||| ||||||||||||||| |||||| |||||| |||||||||| |||||  | ||    
T  12753605 tgttatgaaattaatccagagcattgctagatattgtaaagtatataagaatagagagaaagg-ataaagggagaaccagagagtatattgtattatact 12753703  T
Q  353 tctcaagtgtgtcattac 370  Q
    || |||||||||||||||    
T  12753704 tcacaagtgtgtcattac 12753721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 28874374 - 28874324
Alignment:
Q  251 aaattgttatgaaattcatccttaacattgcaatatattttaaagtatata 301  Q
    |||||||||||||||| |||||||||||||||| ||||| |||||||||||    
T  28874374 aaattgttatgaaattgatccttaacattgcaagatattataaagtatata 28874324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 2927414 - 2927453
Alignment:
Q  162 aattcaacacaatattgttcttaaatcttaatctattaaa 201  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  2927414 aattcaacacaatattgttcttaaatcttaatttattaaa 2927453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 370
Target Start/End: Complemental strand, 17350047 - 17349955
Alignment:
Q  277 attgcaatatattttaaagtatatatgaatagagag-aaaggaataaagagagaacaagagagtatagtgtattgcttctcaagtgtgtcattac 370  Q
    ||||||| ||||| ||||||||||| || ||||||| ||||||||||||| ||||||   ||||||| || |||||||| ||||||||| |||||    
T  17350047 attgcaagatattgtaaagtatataagagtagagagaaaaggaataaagatagaaca--tgagtatattgcattgcttcacaagtgtgtaattac 17349955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 330
Target Start/End: Original strand, 8563660 - 8563713
Alignment:
Q  277 attgcaatatattttaaagtatatatgaatagagagaaaggaataaagagagaa 330  Q
    ||||||| ||||| |||| |||||| ||||| ||||||||||||||||||||||    
T  8563660 attgcaagatattgtaaaatatataagaatacagagaaaggaataaagagagaa 8563713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 322
Target Start/End: Original strand, 46694136 - 46694205
Alignment:
Q  252 aattgttatgaaattcatccttaacattgcaatatattttaaagtatatatgaatagagagaaaggaataa 322  Q
    ||||||||||||||| ||||||| ||| |||| ||||| ||| ||| ||| ||||| ||||||||||||||    
T  46694136 aattgttatgaaattgatccttagcat-gcaagatattataatgtaaataagaatatagagaaaggaataa 46694205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 358
Target Start/End: Original strand, 20355042 - 20355091
Alignment:
Q  309 agagaaaggaataaagagagaacaagagagtatagtgtattgcttctcaa 358  Q
    ||||||| | |||||||||||| || |||||||| |||||||||||||||    
T  20355042 agagaaaaggataaagagagaataaaagagtatattgtattgcttctcaa 20355091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 349
Target Start/End: Complemental strand, 11855 - 11759
Alignment:
Q  253 attgttatgaaattcatccttaacattgcaatatattttaaagtatatatgaatagagagaaaggaataaagagagaacaagagagtatagtgtatt 349  Q
    |||||||||||||| ||||||| |||||||| ||||| ||||||||||| ||| | |||||||  |||||||||||||||  ||||| || ||||||    
T  11855 attgttatgaaattgatccttagcattgcaagatattataaagtatataagaacaaagagaaataaataaagagagaacataagagtgtattgtatt 11759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 285 - 365
Target Start/End: Original strand, 7384758 - 7384838
Alignment:
Q  285 atattttaaagtatatatgaatagagagaaaggaataaagagagaacaagagagtatagtgtattgcttctcaagtgtgtc 365  Q
    ||||| |||| |||||| |||||||||||||| ||||||||||||| |  |||||||| ||||||||||||||||| ||||    
T  7384758 atattataaattatataagaatagagagaaagaaataaagagagaatataagagtatattgtattgcttctcaagtatgtc 7384838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 364
Target Start/End: Complemental strand, 25232193 - 25232135
Alignment:
Q  306 tagagagaaaggaataaagagagaacaagagagtatagtgtattgcttctcaagtgtgt 364  Q
    |||||||||| | |||||| |||||||||||||| || |||||||||||||||||||||    
T  25232193 tagagagaaaaggataaagggagaacaagagagtgtattgtattgcttctcaagtgtgt 25232135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 364
Target Start/End: Complemental strand, 19084660 - 19084617
Alignment:
Q  322 aagagagaacaa-gagagtatagtgtattgcttctcaagtgtgt 364  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  19084660 aagagagaacaaagagagtatagtgtattgcttctcaagtgtgt 19084617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 19086045 - 19086011
Alignment:
Q  167 aacacaatattgttcttaaatcttaatctattaaa 201  Q
    |||||||||||||||||||||||||||||||||||    
T  19086045 aacacaatattgttcttaaatcttaatctattaaa 19086011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 332
Target Start/End: Original strand, 7394664 - 7394741
Alignment:
Q  255 tgttatgaaattcatccttaacattgcaatatattttaaagtatatatgaatagagagaaaggaataaagagagaaca 332  Q
    |||||||||||| ||||  | |||||| | ||||| |||||||||||  ||||||||||||| || ||||||||||||    
T  7394664 tgttatgaaattaatccaaagcattgctagatattataaagtatataaaaatagagagaaagaaacaaagagagaaca 7394741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 364
Target Start/End: Complemental strand, 25225888 - 25225830
Alignment:
Q  306 tagagagaaaggaataaagagagaacaagagagtatagtgtattgcttctcaagtgtgt 364  Q
    |||||||||| | |||||| |||||||| ||||| || ||||||||||||||| |||||    
T  25225888 tagagagaaaaggataaagggagaacaaaagagtgtattgtattgcttctcaactgtgt 25225830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 361
Target Start/End: Complemental strand, 19089688 - 19089648
Alignment:
Q  322 aagagagaacaa-gagagtatagtgtattgcttctcaagtg 361  Q
    |||||||||||| || |||||||||||||||||||||||||    
T  19089688 aagagagaacaaagaaagtatagtgtattgcttctcaagtg 19089648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 19910238 - 19910170
Alignment:
Q  13 aaaatatacataaaattattgttatccttaaggtggtcaagttttaagatcaatatttgtttgagacct 81  Q
    |||||||||||||||||||||| |||||||  | |||||| || || || ||||| ||| |||||||||    
T  19910238 aaaatatacataaaattattgtgatccttagtgaggtcaaattctaggagcaatacttgcttgagacct 19910170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 21292751 - 21292815
Alignment:
Q  17 tatacataaaattattgttatccttaaggtggtcaagttttaagatcaatatttgtttgagacct 81  Q
    |||||||||||||||||| |||||||  | ||||||||| || || ||||| ||| |||||||||    
T  21292751 tatacataaaattattgtgatccttagtgaggtcaagttctaggagcaatacttgcttgagacct 21292815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 261 - 370
Target Start/End: Complemental strand, 38420041 - 38419932
Alignment:
Q  261 gaaattcatccttaacattgcaatatattttaaagtatatatgaatagagagaaaggaataaagagagaacaagagagtatagtgtattgcttctcaagt 360  Q
    |||||| |||||||||||||||| ||||| |||||||| || |||||||||||||| || ||| ||||||||  ||||| |  |||||| |||| ||| |    
T  38420041 gaaattgatccttaacattgcaagatattataaagtatgtaagaatagagagaaagaaacaaatagagaacataagagtgttttgtattacttcacaaat 38419942  T
Q  361 gtgtcattac 370  Q
    ||||| ||||    
T  38419941 gtgtctttac 38419932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 369
Target Start/End: Original strand, 15636203 - 15636316
Alignment:
Q  256 gttatgaaattcatccttaacattgcaatatattttaaagtatatatgaatagagagaaaggaataaagagagaacaagagagtatagtgtattgcttct 355  Q
    ||||||||||| ||||  |  ||||||| | ||| ||||||||||| |||||  || |||| ||||||||||||||| ||||||||| || ||| |||      
T  15636203 gttatgaaatttatccaaagtattgcaagagattgtaaagtatataagaataatgaaaaagaaataaagagagaacatgagagtatattgcattacttta 15636302  T
Q  356 caagtgtgtcatta 369  Q
    ||||||||||||||    
T  15636303 caagtgtgtcatta 15636316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 20463109 - 20463161
Alignment:
Q  312 gaaaggaataaagagagaacaagagagtatagtgtattgcttctcaagtgtgt 364  Q
    |||||| ||||||||| ||||| |||||||  |||||||||||||||||||||    
T  20463109 gaaagggataaagagataacaaaagagtatgatgtattgcttctcaagtgtgt 20463161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 12989560 - 12989490
Alignment:
Q  162 aattcaacacaatattgttcttaaatcttaatctattaaacaaaacaattattgtcagattcacaattataa 233  Q
    |||||||||| ||||||||||||||||||||||| | ||||| || || ||||| || |||||||| |||||    
T  12989560 aattcaacactatattgttcttaaatcttaatctttcaaacagaa-aaatattggcaaattcacaactataa 12989490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 370
Target Start/End: Complemental strand, 10937476 - 10937414
Alignment:
Q  308 gagagaaaggaataaagagagaacaagagagtatagtgtattgcttctcaagtgtgtcattac 370  Q
    |||||||||| ||||| ||| ||||| |||||||  ||||||||||||||| |||||| ||||    
T  10937476 gagagaaagggataaatagataacaaaagagtatgttgtattgcttctcaaatgtgtctttac 10937414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 370
Target Start/End: Complemental strand, 25398308 - 25398244
Alignment:
Q  306 tagagagaaaggaataaagagagaacaagagagtatagtgtattgcttctcaagtgtgtcattac 370  Q
    |||||||||| | |||||| ||||||||||||||||| |||||| |||| |||||||||||||||    
T  25398308 tagagagaaaaggataaagggagaacaagagagtatattgtattacttcacaagtgtgtcattac 25398244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 17275071 - 17275129
Alignment:
Q  306 tagagagaaaggaataaagagagaacaagagagtatagtgtattgcttctcaagtgtgt 364  Q
    ||||||||||   |||||| ||||||||||||| ||| |||||||||||||||||||||    
T  17275071 tagagagaaaaatataaagggagaacaagagagcatattgtattgcttctcaagtgtgt 17275129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 364
Target Start/End: Original strand, 17270156 - 17270194
Alignment:
Q  326 gagaacaagagagtatagtgtattgcttctcaagtgtgt 364  Q
    ||||| ||||||||||| |||||||||||||||||||||    
T  17270156 gagaaaaagagagtatattgtattgcttctcaagtgtgt 17270194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University